INFO 2020-11-12 15:26:33,241Z lrauvNc4ToNetcdf.py processResampleNc4File():1043 Reading /mbari/LRAUV/makai/missionlogs/2018/20180823_20180827/20180827T121808/201808271218_201808271223.nc4 file...
INFO 2020-11-12 15:26:33,241Z lrauvNc4ToNetcdf.py processResampleNc4File():1044 After copying to /tmp/201808271218_201808271223.nc4
INFO 2020-11-12 15:26:34,388Z lrauvNc4ToNetcdf.py processResampleNc4File():1046 Read file /mbari/LRAUV/makai/missionlogs/2018/20180823_20180827/20180827T121808/201808271218_201808271223.nc4
INFO 2020-11-12 15:26:34,414Z lrauvNc4ToNetcdf.py createSeries():241 latitude :  114 v_t values found before 2018-08-27 12:18:00 and after 2018-08-27 12:23:00
INFO 2020-11-12 15:26:34,484Z lrauvNc4ToNetcdf.py createSeries():241 longitude:  114 v_t values found before 2018-08-27 12:18:00 and after 2018-08-27 12:23:00
INFO 2020-11-12 15:26:34,553Z lrauvNc4ToNetcdf.py createSeries():241 depth    :  114 v_t values found before 2018-08-27 12:18:00 and after 2018-08-27 12:23:00
INFO 2020-11-12 15:26:34,624Z lrauvNc4ToNetcdf.py createSeries():241 time     :  114 v_t values found before 2018-08-27 12:18:00 and after 2018-08-27 12:23:00
INFO 2020-11-12 15:26:34,694Z lrauvNc4ToNetcdf.py createSeries():241 latitude :  114 v_t values found before 2018-08-27 12:18:00 and after 2018-08-27 12:23:00
INFO 2020-11-12 15:26:34,762Z lrauvNc4ToNetcdf.py createSeries():241 longitude:  114 v_t values found before 2018-08-27 12:18:00 and after 2018-08-27 12:23:00
INFO 2020-11-12 15:26:34,829Z lrauvNc4ToNetcdf.py createSeries():241 depth    :  114 v_t values found before 2018-08-27 12:18:00 and after 2018-08-27 12:23:00
INFO 2020-11-12 15:26:34,899Z lrauvNc4ToNetcdf.py createSeries():241 time     :  114 v_t values found before 2018-08-27 12:18:00 and after 2018-08-27 12:23:00
INFO 2020-11-12 15:26:34,969Z lrauvNc4ToNetcdf.py createSeries():241 latitude :  114 v_t values found before 2018-08-27 12:18:00 and after 2018-08-27 12:23:00
INFO 2020-11-12 15:26:35,037Z lrauvNc4ToNetcdf.py createSeries():241 longitude:  114 v_t values found before 2018-08-27 12:18:00 and after 2018-08-27 12:23:00
INFO 2020-11-12 15:26:35,104Z lrauvNc4ToNetcdf.py createSeries():241 depth    :  114 v_t values found before 2018-08-27 12:18:00 and after 2018-08-27 12:23:00
INFO 2020-11-12 15:26:35,173Z lrauvNc4ToNetcdf.py createSeries():241 time     :  114 v_t values found before 2018-08-27 12:18:00 and after 2018-08-27 12:23:00
INFO 2020-11-12 15:26:35,243Z lrauvNc4ToNetcdf.py createSeries():241 latitude :  114 v_t values found before 2018-08-27 12:18:00 and after 2018-08-27 12:23:00
INFO 2020-11-12 15:26:35,311Z lrauvNc4ToNetcdf.py createSeries():241 longitude:  114 v_t values found before 2018-08-27 12:18:00 and after 2018-08-27 12:23:00
INFO 2020-11-12 15:26:35,379Z lrauvNc4ToNetcdf.py createSeries():241 depth    :  114 v_t values found before 2018-08-27 12:18:00 and after 2018-08-27 12:23:00
INFO 2020-11-12 15:26:35,449Z lrauvNc4ToNetcdf.py createSeries():241 time     :  114 v_t values found before 2018-08-27 12:18:00 and after 2018-08-27 12:23:00
INFO 2020-11-12 15:26:35,501Z lrauvNc4ToNetcdf.py processResampleNc4File():1059 Creating t variable of the time indexes
INFO 2020-11-12 15:26:35,508Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group Aanderaa_O2 parameter mass_concentration_of_oxygen_in_sea_water renaming to oxygen
INFO 2020-11-12 15:26:35,511Z lrauvNc4ToNetcdf.py processResampleNc4File():1097 Variable sea_water_salinity empty so skipping
INFO 2020-11-12 15:26:35,513Z lrauvNc4ToNetcdf.py processResampleNc4File():1097 Variable sea_water_temperature empty so skipping
INFO 2020-11-12 15:26:35,515Z lrauvNc4ToNetcdf.py processResampleNc4File():1097 Variable bin_median_sea_water_salinity empty so skipping
INFO 2020-11-12 15:26:35,518Z lrauvNc4ToNetcdf.py processResampleNc4File():1097 Variable bin_median_sea_water_temperature empty so skipping
INFO 2020-11-12 15:26:35,519Z lrauvNc4ToNetcdf.py createSeries():241 downwelling_photosynthetic_photon_flux_in_sea_water:  114 v_t values found before 2018-08-27 12:18:00 and after 2018-08-27 12:23:00
INFO 2020-11-12 15:26:35,533Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group PAR_Licor parameter downwelling_photosynthetic_photon_flux_in_sea_water renaming to PAR
INFO 2020-11-12 15:26:35,538Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group WetLabsBB2FL parameter mass_concentration_of_chlorophyll_in_sea_water renaming to chlorophyll
INFO 2020-11-12 15:26:35,543Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group WetLabsBB2FL parameter OutputChl renaming to chl
INFO 2020-11-12 15:26:35,548Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group WetLabsBB2FL parameter Output470 renaming to bbp470
INFO 2020-11-12 15:26:35,553Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group WetLabsBB2FL parameter Output650 renaming to bbp650
INFO 2020-11-12 15:26:35,556Z lrauvNc4ToNetcdf.py processResampleNc4File():1097 Variable bin_mean_mass_concentration_of_chlorophyll_in_sea_water empty so skipping
INFO 2020-11-12 15:26:35,558Z lrauvNc4ToNetcdf.py processResampleNc4File():1097 Variable bin_median_mass_concentration_of_chlorophyll_in_sea_water empty so skipping
INFO 2020-11-12 15:26:35,565Z lrauvNc4ToNetcdf.py processResampleNc4File():1097 Variable platform_battery_charge empty so skipping
INFO 2020-11-12 15:26:35,571Z lrauvNc4ToNetcdf.py processResampleNc4File():1097 Variable platform_battery_voltage empty so skipping
INFO 2020-11-12 15:26:35,576Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group NAL9602 parameter time_fix renaming to fix_time
INFO 2020-11-12 15:26:35,581Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group NAL9602 parameter latitude_fix renaming to fix_latitude
INFO 2020-11-12 15:26:35,587Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group NAL9602 parameter longitude_fix renaming to fix_longitude
INFO 2020-11-12 15:26:35,591Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group BuoyancyServo parameter platform_buoyancy_position renaming to control_inputs_buoyancy_position
INFO 2020-11-12 15:26:35,597Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group ElevatorServo parameter platform_elevator_angle renaming to control_inputs_elevator_angle
INFO 2020-11-12 15:26:35,603Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group MassServo parameter platform_mass_position renaming to control_inputs_mass_position
INFO 2020-11-12 15:26:35,609Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group RudderServo parameter platform_rudder_angle renaming to control_inputs_rudder_angle
INFO 2020-11-12 15:26:35,614Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group ThrusterServo parameter platform_propeller_rotation_rate renaming to control_inputs_propeller_rotation_rate
INFO 2020-11-12 15:26:35,616Z lrauvNc4ToNetcdf.py processResampleNc4File():1097 Variable fix_residual_percent_distance_traveled empty so skipping
INFO 2020-11-12 15:26:35,618Z lrauvNc4ToNetcdf.py createSeries():241 longitude:  114 v_t values found before 2018-08-27 12:18:00 and after 2018-08-27 12:23:00
INFO 2020-11-12 15:26:35,630Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group DeadReckonUsingSpeedCalculator parameter longitude renaming to pose_longitude_DeadReckonUsingSpeedCalculator
INFO 2020-11-12 15:26:35,631Z lrauvNc4ToNetcdf.py createSeries():241 latitude :  114 v_t values found before 2018-08-27 12:18:00 and after 2018-08-27 12:23:00
INFO 2020-11-12 15:26:35,643Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group DeadReckonUsingSpeedCalculator parameter latitude renaming to pose_latitude_DeadReckonUsingSpeedCalculator
INFO 2020-11-12 15:26:35,644Z lrauvNc4ToNetcdf.py createSeries():241 depth    :  114 v_t values found before 2018-08-27 12:18:00 and after 2018-08-27 12:23:00
INFO 2020-11-12 15:26:35,656Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group DeadReckonUsingSpeedCalculator parameter depth renaming to pose_depth_DeadReckonUsingSpeedCalculator
INFO 2020-11-12 15:26:35,681Z lrauvNc4ToNetcdf.py createSeries():241 platform_pitch_angle:  112 v_t values found before 2018-08-27 12:18:00 and after 2018-08-27 12:23:00
INFO 2020-11-12 15:26:35,734Z lrauvNc4ToNetcdf.py createNav():506 platform_pitch_angle -> pitch: {'units': 'n/a', 'standard_name': 'platform_pitch_angle', 'coordinates': 'time depth latitude longitude'}
INFO 2020-11-12 15:26:35,757Z lrauvNc4ToNetcdf.py createSeries():241 platform_roll_angle:  112 v_t values found before 2018-08-27 12:18:00 and after 2018-08-27 12:23:00
INFO 2020-11-12 15:26:35,809Z lrauvNc4ToNetcdf.py createNav():506 platform_roll_angle -> roll: {'units': 'rad', 'standard_name': 'platform_roll_angle', 'coordinates': 'time depth latitude longitude'}
INFO 2020-11-12 15:26:35,832Z lrauvNc4ToNetcdf.py createSeries():241 platform_orientation:  112 v_t values found before 2018-08-27 12:18:00 and after 2018-08-27 12:23:00
INFO 2020-11-12 15:26:35,884Z lrauvNc4ToNetcdf.py createNav():506 platform_orientation -> yaw: {'units': 'n/a', 'standard_name': 'platform_yaw_angle', 'coordinates': 'time depth latitude longitude'}
INFO 2020-11-12 15:26:35,885Z lrauvNc4ToNetcdf.py nudge_coords():651 /mbari/LRAUV/makai/missionlogs/2018/20180823_20180827/20180827T121808/201808271218_201808271223.nc4
INFO 2020-11-12 15:26:36,103Z lrauvNc4ToNetcdf.py nudge_coords():674 seg#  end_sec_diff end_lon_diff end_lat_diff len(segi)   seg_min u_drift (cm/s) v_drift (cm/s)     start datetime of segment
INFO 2020-11-12 15:26:36,104Z lrauvNc4ToNetcdf.py nudge_coords():691                  -            -            -         0      0.00              -              -                             -
INFO 2020-11-12 15:26:36,106Z lrauvNc4ToNetcdf.py nudge_coords():724    0:        0.334    0.0000077    0.0000073        15      0.09          -7.90          14.55 2018-08-27 12:19:39.074909925
INFO 2020-11-12 15:26:36,110Z lrauvNc4ToNetcdf.py nudge_coords():724    1:        0.354    0.0000368   -0.0000215       175      1.26           1.72          -3.16 2018-08-27 12:20:55.087407112
INFO 2020-11-12 15:26:36,114Z lrauvNc4ToNetcdf.py nudge_coords():754    3:            -            -            -       325      2.98              -              -
INFO 2020-11-12 15:26:36,114Z lrauvNc4ToNetcdf.py nudge_coords():758 Points in final series = 515
INFO 2020-11-12 15:26:36,136Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():550 http://odss.mbari.org/trackingdb/position/makai_ac/between/20180827T111819/20180827T132354/data.csv
INFO 2020-11-12 15:26:36,172Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():573 Found 0 position values from the Tracking database
INFO 2020-11-12 15:26:36,174Z lrauvNc4ToNetcdf.py processResampleNc4File():1190 ['oxygen', 'PAR', 'chlorophyll', 'chl', 'bbp470', 'bbp650', 'fix_time', 'fix_latitude', 'fix_longitude', 'control_inputs_buoyancy_position', 'control_inputs_elevator_angle', 'control_inputs_mass_position', 'control_inputs_rudder_angle', 'control_inputs_propeller_rotation_rate', 'pose_longitude_DeadReckonUsingSpeedCalculator', 'pose_latitude_DeadReckonUsingSpeedCalculator', 'pose_depth_DeadReckonUsingSpeedCalculator', 'pitch', 'roll', 'yaw', 'latitude', 'longitude', 'depth', 'time']
INFO 2020-11-12 15:26:36,435Z lrauvNc4ToNetcdf.py processResampleNc4File():1193 Wrote /mbari/LRAUV/makai/missionlogs/2018/20180823_20180827/20180827T121808/201808271218_201808271223_2S_scieng.nc