INFO 2020-11-12 15:25:16,213Z lrauvNc4ToNetcdf.py processResampleNc4File():1043 Reading /mbari/LRAUV/makai/missionlogs/2018/20180823_20180827/20180826T182335/201808261823_201808261904.nc4 file...
INFO 2020-11-12 15:25:16,214Z lrauvNc4ToNetcdf.py processResampleNc4File():1044 After copying to /tmp/201808261823_201808261904.nc4
INFO 2020-11-12 15:25:17,159Z lrauvNc4ToNetcdf.py processResampleNc4File():1046 Read file /mbari/LRAUV/makai/missionlogs/2018/20180823_20180827/20180826T182335/201808261823_201808261904.nc4
INFO 2020-11-12 15:25:17,189Z lrauvNc4ToNetcdf.py createSeries():241 latitude :   60 v_t values found before 2018-08-26 18:23:00 and after 2018-08-26 19:04:00
INFO 2020-11-12 15:25:17,330Z lrauvNc4ToNetcdf.py createSeries():241 longitude:   60 v_t values found before 2018-08-26 18:23:00 and after 2018-08-26 19:04:00
INFO 2020-11-12 15:25:17,463Z lrauvNc4ToNetcdf.py createSeries():241 depth    :   60 v_t values found before 2018-08-26 18:23:00 and after 2018-08-26 19:04:00
INFO 2020-11-12 15:25:17,589Z lrauvNc4ToNetcdf.py createSeries():241 time     :   61 v_t values found before 2018-08-26 18:23:00 and after 2018-08-26 19:04:00
INFO 2020-11-12 15:25:17,726Z lrauvNc4ToNetcdf.py createSeries():241 latitude :   60 v_t values found before 2018-08-26 18:23:00 and after 2018-08-26 19:04:00
INFO 2020-11-12 15:25:17,845Z lrauvNc4ToNetcdf.py createSeries():241 longitude:   60 v_t values found before 2018-08-26 18:23:00 and after 2018-08-26 19:04:00
INFO 2020-11-12 15:25:17,979Z lrauvNc4ToNetcdf.py createSeries():241 depth    :   60 v_t values found before 2018-08-26 18:23:00 and after 2018-08-26 19:04:00
INFO 2020-11-12 15:25:18,115Z lrauvNc4ToNetcdf.py createSeries():241 time     :   61 v_t values found before 2018-08-26 18:23:00 and after 2018-08-26 19:04:00
INFO 2020-11-12 15:25:18,242Z lrauvNc4ToNetcdf.py createSeries():241 latitude :   60 v_t values found before 2018-08-26 18:23:00 and after 2018-08-26 19:04:00
INFO 2020-11-12 15:25:18,370Z lrauvNc4ToNetcdf.py createSeries():241 longitude:   60 v_t values found before 2018-08-26 18:23:00 and after 2018-08-26 19:04:00
INFO 2020-11-12 15:25:18,502Z lrauvNc4ToNetcdf.py createSeries():241 depth    :   60 v_t values found before 2018-08-26 18:23:00 and after 2018-08-26 19:04:00
INFO 2020-11-12 15:25:18,635Z lrauvNc4ToNetcdf.py createSeries():241 time     :   61 v_t values found before 2018-08-26 18:23:00 and after 2018-08-26 19:04:00
INFO 2020-11-12 15:25:18,768Z lrauvNc4ToNetcdf.py createSeries():241 latitude :   60 v_t values found before 2018-08-26 18:23:00 and after 2018-08-26 19:04:00
INFO 2020-11-12 15:25:18,901Z lrauvNc4ToNetcdf.py createSeries():241 longitude:   60 v_t values found before 2018-08-26 18:23:00 and after 2018-08-26 19:04:00
INFO 2020-11-12 15:25:19,031Z lrauvNc4ToNetcdf.py createSeries():241 depth    :   60 v_t values found before 2018-08-26 18:23:00 and after 2018-08-26 19:04:00
INFO 2020-11-12 15:25:19,163Z lrauvNc4ToNetcdf.py createSeries():241 time     :   61 v_t values found before 2018-08-26 18:23:00 and after 2018-08-26 19:04:00
INFO 2020-11-12 15:25:19,279Z lrauvNc4ToNetcdf.py processResampleNc4File():1059 Creating t variable of the time indexes
INFO 2020-11-12 15:25:19,293Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group Aanderaa_O2 parameter mass_concentration_of_oxygen_in_sea_water renaming to oxygen
INFO 2020-11-12 15:25:19,295Z lrauvNc4ToNetcdf.py processResampleNc4File():1097 Variable sea_water_salinity empty so skipping
INFO 2020-11-12 15:25:19,298Z lrauvNc4ToNetcdf.py processResampleNc4File():1097 Variable sea_water_temperature empty so skipping
INFO 2020-11-12 15:25:19,300Z lrauvNc4ToNetcdf.py processResampleNc4File():1097 Variable bin_median_sea_water_salinity empty so skipping
INFO 2020-11-12 15:25:19,302Z lrauvNc4ToNetcdf.py processResampleNc4File():1097 Variable bin_median_sea_water_temperature empty so skipping
INFO 2020-11-12 15:25:19,304Z lrauvNc4ToNetcdf.py createSeries():241 downwelling_photosynthetic_photon_flux_in_sea_water:   60 v_t values found before 2018-08-26 18:23:00 and after 2018-08-26 19:04:00
INFO 2020-11-12 15:25:19,391Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group PAR_Licor parameter downwelling_photosynthetic_photon_flux_in_sea_water renaming to PAR
INFO 2020-11-12 15:25:19,396Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group WetLabsBB2FL parameter mass_concentration_of_chlorophyll_in_sea_water renaming to chlorophyll
INFO 2020-11-12 15:25:19,401Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group WetLabsBB2FL parameter OutputChl renaming to chl
INFO 2020-11-12 15:25:19,407Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group WetLabsBB2FL parameter Output470 renaming to bbp470
INFO 2020-11-12 15:25:19,413Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group WetLabsBB2FL parameter Output650 renaming to bbp650
INFO 2020-11-12 15:25:19,416Z lrauvNc4ToNetcdf.py processResampleNc4File():1097 Variable bin_mean_mass_concentration_of_chlorophyll_in_sea_water empty so skipping
INFO 2020-11-12 15:25:19,418Z lrauvNc4ToNetcdf.py processResampleNc4File():1097 Variable bin_median_mass_concentration_of_chlorophyll_in_sea_water empty so skipping
INFO 2020-11-12 15:25:19,432Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group BPC1 parameter platform_battery_charge renaming to health_platform_battery_charge
INFO 2020-11-12 15:25:19,445Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group BPC1 parameter platform_battery_voltage renaming to health_platform_average_voltage
INFO 2020-11-12 15:25:19,451Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group NAL9602 parameter time_fix renaming to fix_time
INFO 2020-11-12 15:25:19,456Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group NAL9602 parameter latitude_fix renaming to fix_latitude
INFO 2020-11-12 15:25:19,461Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group NAL9602 parameter longitude_fix renaming to fix_longitude
INFO 2020-11-12 15:25:19,466Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group BuoyancyServo parameter platform_buoyancy_position renaming to control_inputs_buoyancy_position
INFO 2020-11-12 15:25:19,473Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group ElevatorServo parameter platform_elevator_angle renaming to control_inputs_elevator_angle
INFO 2020-11-12 15:25:19,482Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group MassServo parameter platform_mass_position renaming to control_inputs_mass_position
INFO 2020-11-12 15:25:19,489Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group RudderServo parameter platform_rudder_angle renaming to control_inputs_rudder_angle
INFO 2020-11-12 15:25:19,494Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group ThrusterServo parameter platform_propeller_rotation_rate renaming to control_inputs_propeller_rotation_rate
INFO 2020-11-12 15:25:19,497Z lrauvNc4ToNetcdf.py processResampleNc4File():1097 Variable fix_residual_percent_distance_traveled empty so skipping
INFO 2020-11-12 15:25:19,498Z lrauvNc4ToNetcdf.py createSeries():241 longitude:   60 v_t values found before 2018-08-26 18:23:00 and after 2018-08-26 19:04:00
INFO 2020-11-12 15:25:19,580Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group DeadReckonUsingSpeedCalculator parameter longitude renaming to pose_longitude_DeadReckonUsingSpeedCalculator
INFO 2020-11-12 15:25:19,582Z lrauvNc4ToNetcdf.py createSeries():241 latitude :   60 v_t values found before 2018-08-26 18:23:00 and after 2018-08-26 19:04:00
INFO 2020-11-12 15:25:19,664Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group DeadReckonUsingSpeedCalculator parameter latitude renaming to pose_latitude_DeadReckonUsingSpeedCalculator
INFO 2020-11-12 15:25:19,666Z lrauvNc4ToNetcdf.py createSeries():241 depth    :   60 v_t values found before 2018-08-26 18:23:00 and after 2018-08-26 19:04:00
INFO 2020-11-12 15:25:19,745Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group DeadReckonUsingSpeedCalculator parameter depth renaming to pose_depth_DeadReckonUsingSpeedCalculator
INFO 2020-11-12 15:25:19,785Z lrauvNc4ToNetcdf.py createSeries():241 platform_pitch_angle:   58 v_t values found before 2018-08-26 18:23:00 and after 2018-08-26 19:04:00
INFO 2020-11-12 15:25:19,910Z lrauvNc4ToNetcdf.py createNav():506 platform_pitch_angle -> pitch: {'units': 'n/a', 'standard_name': 'platform_pitch_angle', 'coordinates': 'time depth latitude longitude'}
INFO 2020-11-12 15:25:19,934Z lrauvNc4ToNetcdf.py createSeries():241 platform_roll_angle:   58 v_t values found before 2018-08-26 18:23:00 and after 2018-08-26 19:04:00
INFO 2020-11-12 15:25:20,064Z lrauvNc4ToNetcdf.py createNav():506 platform_roll_angle -> roll: {'units': 'rad', 'standard_name': 'platform_roll_angle', 'coordinates': 'time depth latitude longitude'}
INFO 2020-11-12 15:25:20,092Z lrauvNc4ToNetcdf.py createSeries():241 platform_orientation:   58 v_t values found before 2018-08-26 18:23:00 and after 2018-08-26 19:04:00
INFO 2020-11-12 15:25:20,222Z lrauvNc4ToNetcdf.py createNav():506 platform_orientation -> yaw: {'units': 'n/a', 'standard_name': 'platform_yaw_angle', 'coordinates': 'time depth latitude longitude'}
INFO 2020-11-12 15:25:20,222Z lrauvNc4ToNetcdf.py nudge_coords():651 /mbari/LRAUV/makai/missionlogs/2018/20180823_20180827/20180826T182335/201808261823_201808261904.nc4
INFO 2020-11-12 15:25:20,573Z lrauvNc4ToNetcdf.py nudge_coords():674 seg#  end_sec_diff end_lon_diff end_lat_diff len(segi)   seg_min u_drift (cm/s) v_drift (cm/s)     start datetime of segment
INFO 2020-11-12 15:25:20,575Z lrauvNc4ToNetcdf.py nudge_coords():691                  -            -            -         0      0.00              -              -                             -
INFO 2020-11-12 15:25:20,576Z lrauvNc4ToNetcdf.py nudge_coords():724    0:        0.338    0.0010138   -0.0007688       219      1.46          62.75         -97.70 2018-08-26 18:26:38.600080967
INFO 2020-11-12 15:25:20,581Z lrauvNc4ToNetcdf.py nudge_coords():724    1:        0.331    0.0002750    0.0006035       149      1.30         -55.14          85.92 2018-08-26 18:27:57.145687103
INFO 2020-11-12 15:25:20,585Z lrauvNc4ToNetcdf.py nudge_coords():724    2:        0.352   -0.0115827    0.0104312       898      6.38        -191.86         302.74 2018-08-26 18:34:20.618112087
INFO 2020-11-12 15:25:20,590Z lrauvNc4ToNetcdf.py nudge_coords():724    3:        0.349   -0.0191933    0.0166740       587      4.50        -426.15         686.49 2018-08-26 18:38:51.070231915
INFO 2020-11-12 15:25:20,594Z lrauvNc4ToNetcdf.py nudge_coords():724    4:        0.361   -0.0111697    0.0098183       362      2.53        -441.28         719.82 2018-08-26 18:41:23.141005039
INFO 2020-11-12 15:25:20,598Z lrauvNc4ToNetcdf.py nudge_coords():724    5:        0.349   -0.0134295    0.0148415       906      6.68        -247.53         411.69 2018-08-26 18:48:04.346229076
INFO 2020-11-12 15:25:20,603Z lrauvNc4ToNetcdf.py nudge_coords():724    6:        0.354    0.0050395    0.0022295       860      6.22         -39.80          66.40 2018-08-26 18:54:18.101106882
INFO 2020-11-12 15:25:20,607Z lrauvNc4ToNetcdf.py nudge_coords():724    7:        0.343   -0.0005475   -0.0001202      1053      7.49           1.78          -2.97 2018-08-26 19:01:47.870515108
INFO 2020-11-12 15:25:20,612Z lrauvNc4ToNetcdf.py nudge_coords():754    9:            -            -            -       353      2.68              -              -
INFO 2020-11-12 15:25:20,612Z lrauvNc4ToNetcdf.py nudge_coords():758 Points in final series = 5387
INFO 2020-11-12 15:25:20,635Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():550 http://odss.mbari.org/trackingdb/position/makai_ac/between/20180826T172346/20180826T200429/data.csv
INFO 2020-11-12 15:25:20,667Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():573 Found 0 position values from the Tracking database
INFO 2020-11-12 15:25:20,670Z lrauvNc4ToNetcdf.py processResampleNc4File():1190 ['oxygen', 'PAR', 'chlorophyll', 'chl', 'bbp470', 'bbp650', 'health_platform_battery_charge', 'health_platform_average_voltage', 'fix_time', 'fix_latitude', 'fix_longitude', 'control_inputs_buoyancy_position', 'control_inputs_elevator_angle', 'control_inputs_mass_position', 'control_inputs_rudder_angle', 'control_inputs_propeller_rotation_rate', 'pose_longitude_DeadReckonUsingSpeedCalculator', 'pose_latitude_DeadReckonUsingSpeedCalculator', 'pose_depth_DeadReckonUsingSpeedCalculator', 'pitch', 'roll', 'yaw', 'latitude', 'longitude', 'depth', 'time']
INFO 2020-11-12 15:25:21,672Z lrauvNc4ToNetcdf.py processResampleNc4File():1193 Wrote /mbari/LRAUV/makai/missionlogs/2018/20180823_20180827/20180826T182335/201808261823_201808261904_2S_scieng.nc