INFO 2020-11-12 15:25:10,093Z lrauvNc4ToNetcdf.py processResampleNc4File():1043 Reading /mbari/LRAUV/makai/missionlogs/2018/20180823_20180827/20180826T172605/201808261726_201808261822.nc4 file...
INFO 2020-11-12 15:25:10,094Z lrauvNc4ToNetcdf.py processResampleNc4File():1044 After copying to /tmp/201808261726_201808261822.nc4
INFO 2020-11-12 15:25:11,074Z lrauvNc4ToNetcdf.py processResampleNc4File():1046 Read file /mbari/LRAUV/makai/missionlogs/2018/20180823_20180827/20180826T172605/201808261726_201808261822.nc4
INFO 2020-11-12 15:25:11,101Z lrauvNc4ToNetcdf.py createSeries():241 latitude :   81 v_t values found before 2018-08-26 17:26:00 and after 2018-08-26 18:22:00
INFO 2020-11-12 15:25:11,268Z lrauvNc4ToNetcdf.py createSeries():241 longitude:   81 v_t values found before 2018-08-26 17:26:00 and after 2018-08-26 18:22:00
INFO 2020-11-12 15:25:11,419Z lrauvNc4ToNetcdf.py createSeries():241 depth    :   81 v_t values found before 2018-08-26 17:26:00 and after 2018-08-26 18:22:00
INFO 2020-11-12 15:25:11,586Z lrauvNc4ToNetcdf.py createSeries():241 time     :   81 v_t values found before 2018-08-26 17:26:00 and after 2018-08-26 18:22:00
INFO 2020-11-12 15:25:11,776Z lrauvNc4ToNetcdf.py createSeries():241 latitude :   81 v_t values found before 2018-08-26 17:26:00 and after 2018-08-26 18:22:00
INFO 2020-11-12 15:25:11,967Z lrauvNc4ToNetcdf.py createSeries():241 longitude:   81 v_t values found before 2018-08-26 17:26:00 and after 2018-08-26 18:22:00
INFO 2020-11-12 15:25:12,137Z lrauvNc4ToNetcdf.py createSeries():241 depth    :   81 v_t values found before 2018-08-26 17:26:00 and after 2018-08-26 18:22:00
INFO 2020-11-12 15:25:12,325Z lrauvNc4ToNetcdf.py createSeries():241 time     :   81 v_t values found before 2018-08-26 17:26:00 and after 2018-08-26 18:22:00
INFO 2020-11-12 15:25:12,491Z lrauvNc4ToNetcdf.py createSeries():241 latitude :   81 v_t values found before 2018-08-26 17:26:00 and after 2018-08-26 18:22:00
INFO 2020-11-12 15:25:12,661Z lrauvNc4ToNetcdf.py createSeries():241 longitude:   81 v_t values found before 2018-08-26 17:26:00 and after 2018-08-26 18:22:00
INFO 2020-11-12 15:25:12,830Z lrauvNc4ToNetcdf.py createSeries():241 depth    :   81 v_t values found before 2018-08-26 17:26:00 and after 2018-08-26 18:22:00
INFO 2020-11-12 15:25:12,984Z lrauvNc4ToNetcdf.py createSeries():241 time     :   81 v_t values found before 2018-08-26 17:26:00 and after 2018-08-26 18:22:00
INFO 2020-11-12 15:25:13,136Z lrauvNc4ToNetcdf.py createSeries():241 latitude :   81 v_t values found before 2018-08-26 17:26:00 and after 2018-08-26 18:22:00
INFO 2020-11-12 15:25:13,281Z lrauvNc4ToNetcdf.py createSeries():241 longitude:   81 v_t values found before 2018-08-26 17:26:00 and after 2018-08-26 18:22:00
INFO 2020-11-12 15:25:13,430Z lrauvNc4ToNetcdf.py createSeries():241 depth    :   81 v_t values found before 2018-08-26 17:26:00 and after 2018-08-26 18:22:00
INFO 2020-11-12 15:25:13,578Z lrauvNc4ToNetcdf.py createSeries():241 time     :   81 v_t values found before 2018-08-26 17:26:00 and after 2018-08-26 18:22:00
INFO 2020-11-12 15:25:13,707Z lrauvNc4ToNetcdf.py processResampleNc4File():1059 Creating t variable of the time indexes
INFO 2020-11-12 15:25:13,717Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group Aanderaa_O2 parameter mass_concentration_of_oxygen_in_sea_water renaming to oxygen
INFO 2020-11-12 15:25:13,720Z lrauvNc4ToNetcdf.py processResampleNc4File():1097 Variable sea_water_salinity empty so skipping
INFO 2020-11-12 15:25:13,722Z lrauvNc4ToNetcdf.py processResampleNc4File():1097 Variable sea_water_temperature empty so skipping
INFO 2020-11-12 15:25:13,724Z lrauvNc4ToNetcdf.py processResampleNc4File():1097 Variable bin_median_sea_water_salinity empty so skipping
INFO 2020-11-12 15:25:13,727Z lrauvNc4ToNetcdf.py processResampleNc4File():1097 Variable bin_median_sea_water_temperature empty so skipping
INFO 2020-11-12 15:25:13,728Z lrauvNc4ToNetcdf.py createSeries():241 downwelling_photosynthetic_photon_flux_in_sea_water:   81 v_t values found before 2018-08-26 17:26:00 and after 2018-08-26 18:22:00
INFO 2020-11-12 15:25:13,826Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group PAR_Licor parameter downwelling_photosynthetic_photon_flux_in_sea_water renaming to PAR
INFO 2020-11-12 15:25:13,831Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group WetLabsBB2FL parameter mass_concentration_of_chlorophyll_in_sea_water renaming to chlorophyll
INFO 2020-11-12 15:25:13,836Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group WetLabsBB2FL parameter OutputChl renaming to chl
INFO 2020-11-12 15:25:13,842Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group WetLabsBB2FL parameter Output470 renaming to bbp470
INFO 2020-11-12 15:25:13,847Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group WetLabsBB2FL parameter Output650 renaming to bbp650
INFO 2020-11-12 15:25:13,849Z lrauvNc4ToNetcdf.py processResampleNc4File():1097 Variable bin_mean_mass_concentration_of_chlorophyll_in_sea_water empty so skipping
INFO 2020-11-12 15:25:13,851Z lrauvNc4ToNetcdf.py processResampleNc4File():1097 Variable bin_median_mass_concentration_of_chlorophyll_in_sea_water empty so skipping
INFO 2020-11-12 15:25:13,866Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group BPC1 parameter platform_battery_charge renaming to health_platform_battery_charge
INFO 2020-11-12 15:25:13,878Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group BPC1 parameter platform_battery_voltage renaming to health_platform_average_voltage
INFO 2020-11-12 15:25:13,884Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group NAL9602 parameter time_fix renaming to fix_time
INFO 2020-11-12 15:25:13,889Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group NAL9602 parameter latitude_fix renaming to fix_latitude
INFO 2020-11-12 15:25:13,895Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group NAL9602 parameter longitude_fix renaming to fix_longitude
INFO 2020-11-12 15:25:13,900Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group BuoyancyServo parameter platform_buoyancy_position renaming to control_inputs_buoyancy_position
INFO 2020-11-12 15:25:13,906Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group ElevatorServo parameter platform_elevator_angle renaming to control_inputs_elevator_angle
INFO 2020-11-12 15:25:13,915Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group MassServo parameter platform_mass_position renaming to control_inputs_mass_position
INFO 2020-11-12 15:25:13,922Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group RudderServo parameter platform_rudder_angle renaming to control_inputs_rudder_angle
INFO 2020-11-12 15:25:13,928Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group ThrusterServo parameter platform_propeller_rotation_rate renaming to control_inputs_propeller_rotation_rate
INFO 2020-11-12 15:25:13,930Z lrauvNc4ToNetcdf.py processResampleNc4File():1097 Variable fix_residual_percent_distance_traveled empty so skipping
INFO 2020-11-12 15:25:13,932Z lrauvNc4ToNetcdf.py createSeries():241 longitude:   81 v_t values found before 2018-08-26 17:26:00 and after 2018-08-26 18:22:00
INFO 2020-11-12 15:25:14,120Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group DeadReckonUsingSpeedCalculator parameter longitude renaming to pose_longitude_DeadReckonUsingSpeedCalculator
INFO 2020-11-12 15:25:14,122Z lrauvNc4ToNetcdf.py createSeries():241 latitude :   81 v_t values found before 2018-08-26 17:26:00 and after 2018-08-26 18:22:00
INFO 2020-11-12 15:25:14,216Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group DeadReckonUsingSpeedCalculator parameter latitude renaming to pose_latitude_DeadReckonUsingSpeedCalculator
INFO 2020-11-12 15:25:14,218Z lrauvNc4ToNetcdf.py createSeries():241 depth    :   81 v_t values found before 2018-08-26 17:26:00 and after 2018-08-26 18:22:00
INFO 2020-11-12 15:25:14,315Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group DeadReckonUsingSpeedCalculator parameter depth renaming to pose_depth_DeadReckonUsingSpeedCalculator
INFO 2020-11-12 15:25:14,342Z lrauvNc4ToNetcdf.py createSeries():241 platform_pitch_angle:   66 v_t values found before 2018-08-26 17:26:00 and after 2018-08-26 18:22:00
INFO 2020-11-12 15:25:14,474Z lrauvNc4ToNetcdf.py createNav():506 platform_pitch_angle -> pitch: {'units': 'n/a', 'standard_name': 'platform_pitch_angle', 'coordinates': 'time depth latitude longitude'}
INFO 2020-11-12 15:25:14,499Z lrauvNc4ToNetcdf.py createSeries():241 platform_roll_angle:   66 v_t values found before 2018-08-26 17:26:00 and after 2018-08-26 18:22:00
INFO 2020-11-12 15:25:14,629Z lrauvNc4ToNetcdf.py createNav():506 platform_roll_angle -> roll: {'units': 'rad', 'standard_name': 'platform_roll_angle', 'coordinates': 'time depth latitude longitude'}
INFO 2020-11-12 15:25:14,652Z lrauvNc4ToNetcdf.py createSeries():241 platform_orientation:   66 v_t values found before 2018-08-26 17:26:00 and after 2018-08-26 18:22:00
INFO 2020-11-12 15:25:14,783Z lrauvNc4ToNetcdf.py createNav():506 platform_orientation -> yaw: {'units': 'n/a', 'standard_name': 'platform_yaw_angle', 'coordinates': 'time depth latitude longitude'}
INFO 2020-11-12 15:25:14,783Z lrauvNc4ToNetcdf.py nudge_coords():651 /mbari/LRAUV/makai/missionlogs/2018/20180823_20180827/20180826T172605/201808261726_201808261822.nc4
INFO 2020-11-12 15:25:15,157Z lrauvNc4ToNetcdf.py nudge_coords():674 seg#  end_sec_diff end_lon_diff end_lat_diff len(segi)   seg_min u_drift (cm/s) v_drift (cm/s)     start datetime of segment
INFO 2020-11-12 15:25:15,158Z lrauvNc4ToNetcdf.py nudge_coords():691                  -            -            -         0      0.00              -              -                             -
INFO 2020-11-12 15:25:15,160Z lrauvNc4ToNetcdf.py nudge_coords():724    0:        0.354    0.0000095   -0.0000097        40      0.26           4.42          -6.92 2018-08-26 17:28:28.234661102
INFO 2020-11-12 15:25:15,164Z lrauvNc4ToNetcdf.py nudge_coords():724    1:        0.320    0.0000597   -0.0000383       177      1.33           3.40          -5.32 2018-08-26 17:29:48.734028101
INFO 2020-11-12 15:25:15,169Z lrauvNc4ToNetcdf.py nudge_coords():724    2:        0.348    0.0003873   -0.0002488       836      6.03           4.89          -7.64 2018-08-26 17:35:50.986695051
INFO 2020-11-12 15:25:15,173Z lrauvNc4ToNetcdf.py nudge_coords():724    3:        0.342    0.0010217   -0.0001637      1221     10.83           1.79          -2.80 2018-08-26 17:46:41.123724937
INFO 2020-11-12 15:25:15,178Z lrauvNc4ToNetcdf.py nudge_coords():724    4:        0.363    0.0000058   -0.0008468       846      6.18          16.25         -25.39 2018-08-26 17:52:52.421475887
INFO 2020-11-12 15:25:15,182Z lrauvNc4ToNetcdf.py nudge_coords():724    5:        0.352    0.0004023   -0.0002823       830      5.99           5.59          -8.73 2018-08-26 17:58:52.305470943
INFO 2020-11-12 15:25:15,187Z lrauvNc4ToNetcdf.py nudge_coords():724    6:        0.361    0.0001780   -0.0003455       840      6.02           6.81         -10.64 2018-08-26 18:04:53.844357967
INFO 2020-11-12 15:25:15,191Z lrauvNc4ToNetcdf.py nudge_coords():724    7:        0.345   -0.0000633   -0.0001678       833      5.99           3.33          -5.20 2018-08-26 18:10:53.401753902
INFO 2020-11-12 15:25:15,196Z lrauvNc4ToNetcdf.py nudge_coords():724    8:        0.351    0.0002630   -0.0007492       898      6.51          13.68         -21.33 2018-08-26 18:17:24.267600059
INFO 2020-11-12 15:25:15,200Z lrauvNc4ToNetcdf.py nudge_coords():754   10:            -            -            -       716      5.13              -              -
INFO 2020-11-12 15:25:15,200Z lrauvNc4ToNetcdf.py nudge_coords():758 Points in final series = 7237
INFO 2020-11-12 15:25:15,223Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():550 http://odss.mbari.org/trackingdb/position/makai_ac/between/20180826T162616/20180826T192232/data.csv
INFO 2020-11-12 15:25:15,263Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():573 Found 0 position values from the Tracking database
INFO 2020-11-12 15:25:15,266Z lrauvNc4ToNetcdf.py processResampleNc4File():1190 ['oxygen', 'PAR', 'chlorophyll', 'chl', 'bbp470', 'bbp650', 'health_platform_battery_charge', 'health_platform_average_voltage', 'fix_time', 'fix_latitude', 'fix_longitude', 'control_inputs_buoyancy_position', 'control_inputs_elevator_angle', 'control_inputs_mass_position', 'control_inputs_rudder_angle', 'control_inputs_propeller_rotation_rate', 'pose_longitude_DeadReckonUsingSpeedCalculator', 'pose_latitude_DeadReckonUsingSpeedCalculator', 'pose_depth_DeadReckonUsingSpeedCalculator', 'pitch', 'roll', 'yaw', 'latitude', 'longitude', 'depth', 'time']
INFO 2020-11-12 15:25:15,985Z lrauvNc4ToNetcdf.py processResampleNc4File():1193 Wrote /mbari/LRAUV/makai/missionlogs/2018/20180823_20180827/20180826T172605/201808261726_201808261822_2S_scieng.nc