INFO 2020-11-12 15:25:06,182Z lrauvNc4ToNetcdf.py processResampleNc4File():1043 Reading /mbari/LRAUV/makai/missionlogs/2018/20180823_20180827/20180826T170501/201808261705_201808261724.nc4 file...
INFO 2020-11-12 15:25:06,182Z lrauvNc4ToNetcdf.py processResampleNc4File():1044 After copying to /tmp/201808261705_201808261724.nc4
INFO 2020-11-12 15:25:07,253Z lrauvNc4ToNetcdf.py processResampleNc4File():1046 Read file /mbari/LRAUV/makai/missionlogs/2018/20180823_20180827/20180826T170501/201808261705_201808261724.nc4
INFO 2020-11-12 15:25:07,277Z lrauvNc4ToNetcdf.py createSeries():241 latitude :   58 v_t values found before 2018-08-26 17:05:00 and after 2018-08-26 17:24:00
INFO 2020-11-12 15:25:07,335Z lrauvNc4ToNetcdf.py createSeries():241 longitude:   58 v_t values found before 2018-08-26 17:05:00 and after 2018-08-26 17:24:00
INFO 2020-11-12 15:25:07,392Z lrauvNc4ToNetcdf.py createSeries():241 depth    :  121 v_t values found before 2018-08-26 17:05:00 and after 2018-08-26 17:24:00
INFO 2020-11-12 15:25:07,482Z lrauvNc4ToNetcdf.py createSeries():241 time     :  121 v_t values found before 2018-08-26 17:05:00 and after 2018-08-26 17:24:00
INFO 2020-11-12 15:25:07,571Z lrauvNc4ToNetcdf.py createSeries():241 latitude :   58 v_t values found before 2018-08-26 17:05:00 and after 2018-08-26 17:24:00
INFO 2020-11-12 15:25:07,628Z lrauvNc4ToNetcdf.py createSeries():241 longitude:   58 v_t values found before 2018-08-26 17:05:00 and after 2018-08-26 17:24:00
INFO 2020-11-12 15:25:07,684Z lrauvNc4ToNetcdf.py createSeries():241 depth    :  121 v_t values found before 2018-08-26 17:05:00 and after 2018-08-26 17:24:00
INFO 2020-11-12 15:25:07,774Z lrauvNc4ToNetcdf.py createSeries():241 time     :  121 v_t values found before 2018-08-26 17:05:00 and after 2018-08-26 17:24:00
INFO 2020-11-12 15:25:07,864Z lrauvNc4ToNetcdf.py createSeries():241 latitude :   58 v_t values found before 2018-08-26 17:05:00 and after 2018-08-26 17:24:00
INFO 2020-11-12 15:25:07,920Z lrauvNc4ToNetcdf.py createSeries():241 longitude:   58 v_t values found before 2018-08-26 17:05:00 and after 2018-08-26 17:24:00
INFO 2020-11-12 15:25:07,976Z lrauvNc4ToNetcdf.py createSeries():241 depth    :  121 v_t values found before 2018-08-26 17:05:00 and after 2018-08-26 17:24:00
INFO 2020-11-12 15:25:08,067Z lrauvNc4ToNetcdf.py createSeries():241 time     :  121 v_t values found before 2018-08-26 17:05:00 and after 2018-08-26 17:24:00
INFO 2020-11-12 15:25:08,158Z lrauvNc4ToNetcdf.py createSeries():241 latitude :   58 v_t values found before 2018-08-26 17:05:00 and after 2018-08-26 17:24:00
INFO 2020-11-12 15:25:08,215Z lrauvNc4ToNetcdf.py createSeries():241 longitude:   58 v_t values found before 2018-08-26 17:05:00 and after 2018-08-26 17:24:00
INFO 2020-11-12 15:25:08,271Z lrauvNc4ToNetcdf.py createSeries():241 depth    :  121 v_t values found before 2018-08-26 17:05:00 and after 2018-08-26 17:24:00
INFO 2020-11-12 15:25:08,360Z lrauvNc4ToNetcdf.py createSeries():241 time     :  121 v_t values found before 2018-08-26 17:05:00 and after 2018-08-26 17:24:00
INFO 2020-11-12 15:25:08,432Z lrauvNc4ToNetcdf.py processResampleNc4File():1059 Creating t variable of the time indexes
INFO 2020-11-12 15:25:08,440Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group Aanderaa_O2 parameter mass_concentration_of_oxygen_in_sea_water renaming to oxygen
INFO 2020-11-12 15:25:08,442Z lrauvNc4ToNetcdf.py processResampleNc4File():1097 Variable sea_water_salinity empty so skipping
INFO 2020-11-12 15:25:08,444Z lrauvNc4ToNetcdf.py processResampleNc4File():1097 Variable sea_water_temperature empty so skipping
INFO 2020-11-12 15:25:08,447Z lrauvNc4ToNetcdf.py processResampleNc4File():1097 Variable bin_median_sea_water_salinity empty so skipping
INFO 2020-11-12 15:25:08,449Z lrauvNc4ToNetcdf.py processResampleNc4File():1097 Variable bin_median_sea_water_temperature empty so skipping
INFO 2020-11-12 15:25:08,451Z lrauvNc4ToNetcdf.py createSeries():241 downwelling_photosynthetic_photon_flux_in_sea_water:  122 v_t values found before 2018-08-26 17:05:00 and after 2018-08-26 17:24:00
INFO 2020-11-12 15:25:08,490Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group PAR_Licor parameter downwelling_photosynthetic_photon_flux_in_sea_water renaming to PAR
INFO 2020-11-12 15:25:08,496Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group WetLabsBB2FL parameter mass_concentration_of_chlorophyll_in_sea_water renaming to chlorophyll
INFO 2020-11-12 15:25:08,500Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group WetLabsBB2FL parameter OutputChl renaming to chl
INFO 2020-11-12 15:25:08,505Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group WetLabsBB2FL parameter Output470 renaming to bbp470
INFO 2020-11-12 15:25:08,510Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group WetLabsBB2FL parameter Output650 renaming to bbp650
INFO 2020-11-12 15:25:08,513Z lrauvNc4ToNetcdf.py processResampleNc4File():1097 Variable bin_mean_mass_concentration_of_chlorophyll_in_sea_water empty so skipping
INFO 2020-11-12 15:25:08,515Z lrauvNc4ToNetcdf.py processResampleNc4File():1097 Variable bin_median_mass_concentration_of_chlorophyll_in_sea_water empty so skipping
INFO 2020-11-12 15:25:08,522Z lrauvNc4ToNetcdf.py processResampleNc4File():1097 Variable platform_battery_charge empty so skipping
INFO 2020-11-12 15:25:08,528Z lrauvNc4ToNetcdf.py processResampleNc4File():1097 Variable platform_battery_voltage empty so skipping
INFO 2020-11-12 15:25:08,533Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group NAL9602 parameter time_fix renaming to fix_time
INFO 2020-11-12 15:25:08,538Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group NAL9602 parameter latitude_fix renaming to fix_latitude
INFO 2020-11-12 15:25:08,542Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group NAL9602 parameter longitude_fix renaming to fix_longitude
INFO 2020-11-12 15:25:08,547Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group BuoyancyServo parameter platform_buoyancy_position renaming to control_inputs_buoyancy_position
INFO 2020-11-12 15:25:08,553Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group ElevatorServo parameter platform_elevator_angle renaming to control_inputs_elevator_angle
INFO 2020-11-12 15:25:08,559Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group MassServo parameter platform_mass_position renaming to control_inputs_mass_position
INFO 2020-11-12 15:25:08,565Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group RudderServo parameter platform_rudder_angle renaming to control_inputs_rudder_angle
INFO 2020-11-12 15:25:08,570Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group ThrusterServo parameter platform_propeller_rotation_rate renaming to control_inputs_propeller_rotation_rate
INFO 2020-11-12 15:25:08,572Z lrauvNc4ToNetcdf.py processResampleNc4File():1097 Variable fix_residual_percent_distance_traveled empty so skipping
INFO 2020-11-12 15:25:08,573Z lrauvNc4ToNetcdf.py createSeries():241 longitude:   58 v_t values found before 2018-08-26 17:05:00 and after 2018-08-26 17:24:00
INFO 2020-11-12 15:25:08,577Z lrauvNc4ToNetcdf.py processResampleNc4File():1097 Variable longitude empty so skipping
INFO 2020-11-12 15:25:08,578Z lrauvNc4ToNetcdf.py createSeries():241 latitude :   58 v_t values found before 2018-08-26 17:05:00 and after 2018-08-26 17:24:00
INFO 2020-11-12 15:25:08,582Z lrauvNc4ToNetcdf.py processResampleNc4File():1097 Variable latitude empty so skipping
INFO 2020-11-12 15:25:08,583Z lrauvNc4ToNetcdf.py createSeries():241 depth    :   58 v_t values found before 2018-08-26 17:05:00 and after 2018-08-26 17:24:00
INFO 2020-11-12 15:25:08,587Z lrauvNc4ToNetcdf.py processResampleNc4File():1097 Variable depth empty so skipping
INFO 2020-11-12 15:25:08,609Z lrauvNc4ToNetcdf.py createSeries():241 platform_pitch_angle:  117 v_t values found before 2018-08-26 17:05:00 and after 2018-08-26 17:24:00
INFO 2020-11-12 15:25:08,684Z lrauvNc4ToNetcdf.py createNav():506 platform_pitch_angle -> pitch: {'units': 'n/a', 'standard_name': 'platform_pitch_angle', 'coordinates': 'time depth latitude longitude'}
INFO 2020-11-12 15:25:08,705Z lrauvNc4ToNetcdf.py createSeries():241 platform_roll_angle:  117 v_t values found before 2018-08-26 17:05:00 and after 2018-08-26 17:24:00
INFO 2020-11-12 15:25:08,779Z lrauvNc4ToNetcdf.py createNav():506 platform_roll_angle -> roll: {'units': 'rad', 'standard_name': 'platform_roll_angle', 'coordinates': 'time depth latitude longitude'}
INFO 2020-11-12 15:25:08,800Z lrauvNc4ToNetcdf.py createSeries():241 platform_orientation:  117 v_t values found before 2018-08-26 17:05:00 and after 2018-08-26 17:24:00
INFO 2020-11-12 15:25:08,874Z lrauvNc4ToNetcdf.py createNav():506 platform_orientation -> yaw: {'units': 'n/a', 'standard_name': 'platform_yaw_angle', 'coordinates': 'time depth latitude longitude'}
INFO 2020-11-12 15:25:08,874Z lrauvNc4ToNetcdf.py nudge_coords():651 /mbari/LRAUV/makai/missionlogs/2018/20180823_20180827/20180826T170501/201808261705_201808261724.nc4
INFO 2020-11-12 15:25:09,066Z lrauvNc4ToNetcdf.py nudge_coords():674 seg#  end_sec_diff end_lon_diff end_lat_diff len(segi)   seg_min u_drift (cm/s) v_drift (cm/s)     start datetime of segment
INFO 2020-11-12 15:25:09,067Z lrauvNc4ToNetcdf.py nudge_coords():691                  -            -            -         0      0.00              -              -                             -
INFO 2020-11-12 15:25:09,068Z lrauvNc4ToNetcdf.py nudge_coords():754    1:            -            -            -        58      0.44              -              -
INFO 2020-11-12 15:25:09,069Z lrauvNc4ToNetcdf.py nudge_coords():758 Points in final series = 58
INFO 2020-11-12 15:25:09,088Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():550 http://odss.mbari.org/trackingdb/position/makai_ac/between/20180826T160512/20180826T182453/data.csv
INFO 2020-11-12 15:25:09,127Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():573 Found 0 position values from the Tracking database
INFO 2020-11-12 15:25:09,131Z lrauvNc4ToNetcdf.py processResampleNc4File():1190 ['oxygen', 'PAR', 'chlorophyll', 'chl', 'bbp470', 'bbp650', 'fix_time', 'fix_latitude', 'fix_longitude', 'control_inputs_buoyancy_position', 'control_inputs_elevator_angle', 'control_inputs_mass_position', 'control_inputs_rudder_angle', 'control_inputs_propeller_rotation_rate', 'pitch', 'roll', 'yaw', 'latitude', 'longitude', 'depth', 'time']
INFO 2020-11-12 15:25:09,839Z lrauvNc4ToNetcdf.py processResampleNc4File():1193 Wrote /mbari/LRAUV/makai/missionlogs/2018/20180823_20180827/20180826T170501/201808261705_201808261724_2S_scieng.nc