INFO 2020-11-12 15:24:15,053Z lrauvNc4ToNetcdf.py processResampleNc4File():1043 Reading /mbari/LRAUV/makai/missionlogs/2018/20180823_20180827/20180826T040308/201808260403_201808260418.nc4 file...
INFO 2020-11-12 15:24:15,053Z lrauvNc4ToNetcdf.py processResampleNc4File():1044 After copying to /tmp/201808260403_201808260418.nc4
INFO 2020-11-12 15:24:16,015Z lrauvNc4ToNetcdf.py processResampleNc4File():1046 Read file /mbari/LRAUV/makai/missionlogs/2018/20180823_20180827/20180826T040308/201808260403_201808260418.nc4
INFO 2020-11-12 15:24:16,041Z lrauvNc4ToNetcdf.py createSeries():241 latitude :   25 v_t values found before 2018-08-26 04:03:00 and after 2018-08-26 04:18:00
INFO 2020-11-12 15:24:16,128Z lrauvNc4ToNetcdf.py createSeries():241 longitude:   25 v_t values found before 2018-08-26 04:03:00 and after 2018-08-26 04:18:00
INFO 2020-11-12 15:24:16,210Z lrauvNc4ToNetcdf.py createSeries():241 depth    :   25 v_t values found before 2018-08-26 04:03:00 and after 2018-08-26 04:18:00
INFO 2020-11-12 15:24:16,291Z lrauvNc4ToNetcdf.py createSeries():241 time     :   25 v_t values found before 2018-08-26 04:03:00 and after 2018-08-26 04:18:00
INFO 2020-11-12 15:24:16,372Z lrauvNc4ToNetcdf.py createSeries():241 latitude :   25 v_t values found before 2018-08-26 04:03:00 and after 2018-08-26 04:18:00
INFO 2020-11-12 15:24:16,452Z lrauvNc4ToNetcdf.py createSeries():241 longitude:   25 v_t values found before 2018-08-26 04:03:00 and after 2018-08-26 04:18:00
INFO 2020-11-12 15:24:16,541Z lrauvNc4ToNetcdf.py createSeries():241 depth    :   25 v_t values found before 2018-08-26 04:03:00 and after 2018-08-26 04:18:00
INFO 2020-11-12 15:24:16,635Z lrauvNc4ToNetcdf.py createSeries():241 time     :   25 v_t values found before 2018-08-26 04:03:00 and after 2018-08-26 04:18:00
INFO 2020-11-12 15:24:16,726Z lrauvNc4ToNetcdf.py createSeries():241 latitude :   25 v_t values found before 2018-08-26 04:03:00 and after 2018-08-26 04:18:00
INFO 2020-11-12 15:24:16,819Z lrauvNc4ToNetcdf.py createSeries():241 longitude:   25 v_t values found before 2018-08-26 04:03:00 and after 2018-08-26 04:18:00
INFO 2020-11-12 15:24:16,903Z lrauvNc4ToNetcdf.py createSeries():241 depth    :   25 v_t values found before 2018-08-26 04:03:00 and after 2018-08-26 04:18:00
INFO 2020-11-12 15:24:16,988Z lrauvNc4ToNetcdf.py createSeries():241 time     :   25 v_t values found before 2018-08-26 04:03:00 and after 2018-08-26 04:18:00
INFO 2020-11-12 15:24:17,070Z lrauvNc4ToNetcdf.py createSeries():241 latitude :   25 v_t values found before 2018-08-26 04:03:00 and after 2018-08-26 04:18:00
INFO 2020-11-12 15:24:17,151Z lrauvNc4ToNetcdf.py createSeries():241 longitude:   25 v_t values found before 2018-08-26 04:03:00 and after 2018-08-26 04:18:00
INFO 2020-11-12 15:24:17,232Z lrauvNc4ToNetcdf.py createSeries():241 depth    :   25 v_t values found before 2018-08-26 04:03:00 and after 2018-08-26 04:18:00
INFO 2020-11-12 15:24:17,314Z lrauvNc4ToNetcdf.py createSeries():241 time     :   25 v_t values found before 2018-08-26 04:03:00 and after 2018-08-26 04:18:00
INFO 2020-11-12 15:24:17,376Z lrauvNc4ToNetcdf.py processResampleNc4File():1059 Creating t variable of the time indexes
INFO 2020-11-12 15:24:17,382Z lrauvNc4ToNetcdf.py processResampleNc4File():1097 Variable mass_concentration_of_oxygen_in_sea_water empty so skipping
INFO 2020-11-12 15:24:17,384Z lrauvNc4ToNetcdf.py processResampleNc4File():1097 Variable sea_water_salinity empty so skipping
INFO 2020-11-12 15:24:17,386Z lrauvNc4ToNetcdf.py processResampleNc4File():1097 Variable sea_water_temperature empty so skipping
INFO 2020-11-12 15:24:17,388Z lrauvNc4ToNetcdf.py processResampleNc4File():1097 Variable bin_median_sea_water_salinity empty so skipping
INFO 2020-11-12 15:24:17,391Z lrauvNc4ToNetcdf.py processResampleNc4File():1097 Variable bin_median_sea_water_temperature empty so skipping
INFO 2020-11-12 15:24:17,392Z lrauvNc4ToNetcdf.py createSeries():241 downwelling_photosynthetic_photon_flux_in_sea_water:   25 v_t values found before 2018-08-26 04:03:00 and after 2018-08-26 04:18:00
INFO 2020-11-12 15:24:17,421Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group PAR_Licor parameter downwelling_photosynthetic_photon_flux_in_sea_water renaming to PAR
INFO 2020-11-12 15:24:17,423Z lrauvNc4ToNetcdf.py processResampleNc4File():1097 Variable mass_concentration_of_chlorophyll_in_sea_water empty so skipping
INFO 2020-11-12 15:24:17,425Z lrauvNc4ToNetcdf.py processResampleNc4File():1097 Variable OutputChl empty so skipping
INFO 2020-11-12 15:24:17,428Z lrauvNc4ToNetcdf.py processResampleNc4File():1097 Variable Output470 empty so skipping
INFO 2020-11-12 15:24:17,430Z lrauvNc4ToNetcdf.py processResampleNc4File():1097 Variable Output650 empty so skipping
INFO 2020-11-12 15:24:17,432Z lrauvNc4ToNetcdf.py processResampleNc4File():1097 Variable bin_mean_mass_concentration_of_chlorophyll_in_sea_water empty so skipping
INFO 2020-11-12 15:24:17,435Z lrauvNc4ToNetcdf.py processResampleNc4File():1097 Variable bin_median_mass_concentration_of_chlorophyll_in_sea_water empty so skipping
INFO 2020-11-12 15:24:17,441Z lrauvNc4ToNetcdf.py processResampleNc4File():1097 Variable platform_battery_charge empty so skipping
INFO 2020-11-12 15:24:17,447Z lrauvNc4ToNetcdf.py processResampleNc4File():1097 Variable platform_battery_voltage empty so skipping
INFO 2020-11-12 15:24:17,453Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group NAL9602 parameter time_fix renaming to fix_time
INFO 2020-11-12 15:24:17,458Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group NAL9602 parameter latitude_fix renaming to fix_latitude
INFO 2020-11-12 15:24:17,463Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group NAL9602 parameter longitude_fix renaming to fix_longitude
INFO 2020-11-12 15:24:17,465Z lrauvNc4ToNetcdf.py processResampleNc4File():1097 Variable platform_buoyancy_position empty so skipping
INFO 2020-11-12 15:24:17,470Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group ElevatorServo parameter platform_elevator_angle renaming to control_inputs_elevator_angle
INFO 2020-11-12 15:24:17,475Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group MassServo parameter platform_mass_position renaming to control_inputs_mass_position
INFO 2020-11-12 15:24:17,480Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group RudderServo parameter platform_rudder_angle renaming to control_inputs_rudder_angle
INFO 2020-11-12 15:24:17,483Z lrauvNc4ToNetcdf.py processResampleNc4File():1097 Variable platform_propeller_rotation_rate empty so skipping
INFO 2020-11-12 15:24:17,485Z lrauvNc4ToNetcdf.py processResampleNc4File():1097 Variable fix_residual_percent_distance_traveled empty so skipping
INFO 2020-11-12 15:24:17,486Z lrauvNc4ToNetcdf.py createSeries():241 longitude:   25 v_t values found before 2018-08-26 04:03:00 and after 2018-08-26 04:18:00
INFO 2020-11-12 15:24:17,515Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group DeadReckonUsingSpeedCalculator parameter longitude renaming to pose_longitude_DeadReckonUsingSpeedCalculator
INFO 2020-11-12 15:24:17,516Z lrauvNc4ToNetcdf.py createSeries():241 latitude :   25 v_t values found before 2018-08-26 04:03:00 and after 2018-08-26 04:18:00
INFO 2020-11-12 15:24:17,545Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group DeadReckonUsingSpeedCalculator parameter latitude renaming to pose_latitude_DeadReckonUsingSpeedCalculator
INFO 2020-11-12 15:24:17,546Z lrauvNc4ToNetcdf.py createSeries():241 depth    :   25 v_t values found before 2018-08-26 04:03:00 and after 2018-08-26 04:18:00
INFO 2020-11-12 15:24:17,574Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group DeadReckonUsingSpeedCalculator parameter depth renaming to pose_depth_DeadReckonUsingSpeedCalculator
INFO 2020-11-12 15:24:17,600Z lrauvNc4ToNetcdf.py createSeries():241 platform_pitch_angle:   23 v_t values found before 2018-08-26 04:03:00 and after 2018-08-26 04:18:00
INFO 2020-11-12 15:24:17,666Z lrauvNc4ToNetcdf.py createNav():506 platform_pitch_angle -> pitch: {'units': 'n/a', 'standard_name': 'platform_pitch_angle', 'coordinates': 'time depth latitude longitude'}
INFO 2020-11-12 15:24:17,689Z lrauvNc4ToNetcdf.py createSeries():241 platform_roll_angle:   23 v_t values found before 2018-08-26 04:03:00 and after 2018-08-26 04:18:00
INFO 2020-11-12 15:24:17,755Z lrauvNc4ToNetcdf.py createNav():506 platform_roll_angle -> roll: {'units': 'rad', 'standard_name': 'platform_roll_angle', 'coordinates': 'time depth latitude longitude'}
INFO 2020-11-12 15:24:17,777Z lrauvNc4ToNetcdf.py createSeries():241 platform_orientation:   23 v_t values found before 2018-08-26 04:03:00 and after 2018-08-26 04:18:00
INFO 2020-11-12 15:24:17,843Z lrauvNc4ToNetcdf.py createNav():506 platform_orientation -> yaw: {'units': 'n/a', 'standard_name': 'platform_yaw_angle', 'coordinates': 'time depth latitude longitude'}
INFO 2020-11-12 15:24:17,844Z lrauvNc4ToNetcdf.py nudge_coords():651 /mbari/LRAUV/makai/missionlogs/2018/20180823_20180827/20180826T040308/201808260403_201808260418.nc4
INFO 2020-11-12 15:24:18,091Z lrauvNc4ToNetcdf.py nudge_coords():674 seg#  end_sec_diff end_lon_diff end_lat_diff len(segi)   seg_min u_drift (cm/s) v_drift (cm/s)     start datetime of segment
INFO 2020-11-12 15:24:18,092Z lrauvNc4ToNetcdf.py nudge_coords():691                  -            -            -         0      0.00              -              -                             -
INFO 2020-11-12 15:24:18,093Z lrauvNc4ToNetcdf.py nudge_coords():724    0:        0.338   -0.0000480   -0.0000213        43      0.28           9.40         -13.97 2018-08-26 04:03:32.663852930
INFO 2020-11-12 15:24:18,098Z lrauvNc4ToNetcdf.py nudge_coords():724    1:        0.239    0.0002733    0.0003298       157      1.26         -32.61          48.49 2018-08-26 04:04:48.685384989
INFO 2020-11-12 15:24:18,102Z lrauvNc4ToNetcdf.py nudge_coords():724    2:        0.347   -0.0001568    0.0000687       951      6.96          -1.23           1.83 2018-08-26 04:11:46.753485918
INFO 2020-11-12 15:24:18,106Z lrauvNc4ToNetcdf.py nudge_coords():754    4:            -            -            -       725      6.48              -              -
INFO 2020-11-12 15:24:18,106Z lrauvNc4ToNetcdf.py nudge_coords():758 Points in final series = 1876
INFO 2020-11-12 15:24:18,129Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():550 http://odss.mbari.org/trackingdb/position/makai_ac/between/20180826T030308/20180826T051815/data.csv
INFO 2020-11-12 15:24:18,162Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():573 Found 0 position values from the Tracking database
INFO 2020-11-12 15:24:18,165Z lrauvNc4ToNetcdf.py processResampleNc4File():1190 ['PAR', 'fix_time', 'fix_latitude', 'fix_longitude', 'control_inputs_elevator_angle', 'control_inputs_mass_position', 'control_inputs_rudder_angle', 'pose_longitude_DeadReckonUsingSpeedCalculator', 'pose_latitude_DeadReckonUsingSpeedCalculator', 'pose_depth_DeadReckonUsingSpeedCalculator', 'pitch', 'roll', 'yaw', 'latitude', 'longitude', 'depth', 'time']
INFO 2020-11-12 15:24:18,632Z lrauvNc4ToNetcdf.py processResampleNc4File():1193 Wrote /mbari/LRAUV/makai/missionlogs/2018/20180823_20180827/20180826T040308/201808260403_201808260418_2S_scieng.nc