INFO 2020-11-12 15:23:42,335Z lrauvNc4ToNetcdf.py processResampleNc4File():1043 Reading /mbari/LRAUV/makai/missionlogs/2018/20180823_20180827/20180825T201838/201808252018_201808260401.nc4 file... INFO 2020-11-12 15:23:42,336Z lrauvNc4ToNetcdf.py processResampleNc4File():1044 After copying to /tmp/201808252018_201808260401.nc4 INFO 2020-11-12 15:23:43,812Z lrauvNc4ToNetcdf.py processResampleNc4File():1046 Read file /mbari/LRAUV/makai/missionlogs/2018/20180823_20180827/20180825T201838/201808252018_201808260401.nc4 INFO 2020-11-12 15:23:43,866Z lrauvNc4ToNetcdf.py createSeries():241 latitude : 12 v_t values found before 2018-08-25 20:18:00 and after 2018-08-26 04:01:00 INFO 2020-11-12 15:23:44,765Z lrauvNc4ToNetcdf.py createSeries():241 longitude: 12 v_t values found before 2018-08-25 20:18:00 and after 2018-08-26 04:01:00 INFO 2020-11-12 15:23:45,636Z lrauvNc4ToNetcdf.py createSeries():241 depth : 13 v_t values found before 2018-08-25 20:18:00 and after 2018-08-26 04:01:00 INFO 2020-11-12 15:23:46,512Z lrauvNc4ToNetcdf.py createSeries():241 time : 12 v_t values found before 2018-08-25 20:18:00 and after 2018-08-26 04:01:00 INFO 2020-11-12 15:23:47,397Z lrauvNc4ToNetcdf.py createSeries():241 latitude : 12 v_t values found before 2018-08-25 20:18:00 and after 2018-08-26 04:01:00 INFO 2020-11-12 15:23:48,269Z lrauvNc4ToNetcdf.py createSeries():241 longitude: 12 v_t values found before 2018-08-25 20:18:00 and after 2018-08-26 04:01:00 INFO 2020-11-12 15:23:49,140Z lrauvNc4ToNetcdf.py createSeries():241 depth : 13 v_t values found before 2018-08-25 20:18:00 and after 2018-08-26 04:01:00 INFO 2020-11-12 15:23:50,012Z lrauvNc4ToNetcdf.py createSeries():241 time : 12 v_t values found before 2018-08-25 20:18:00 and after 2018-08-26 04:01:00 INFO 2020-11-12 15:23:50,883Z lrauvNc4ToNetcdf.py createSeries():241 latitude : 12 v_t values found before 2018-08-25 20:18:00 and after 2018-08-26 04:01:00 INFO 2020-11-12 15:23:51,762Z lrauvNc4ToNetcdf.py createSeries():241 longitude: 12 v_t values found before 2018-08-25 20:18:00 and after 2018-08-26 04:01:00 INFO 2020-11-12 15:23:52,625Z lrauvNc4ToNetcdf.py createSeries():241 depth : 13 v_t values found before 2018-08-25 20:18:00 and after 2018-08-26 04:01:00 INFO 2020-11-12 15:23:53,495Z lrauvNc4ToNetcdf.py createSeries():241 time : 12 v_t values found before 2018-08-25 20:18:00 and after 2018-08-26 04:01:00 INFO 2020-11-12 15:23:54,360Z lrauvNc4ToNetcdf.py createSeries():241 latitude : 12 v_t values found before 2018-08-25 20:18:00 and after 2018-08-26 04:01:00 INFO 2020-11-12 15:23:55,230Z lrauvNc4ToNetcdf.py createSeries():241 longitude: 12 v_t values found before 2018-08-25 20:18:00 and after 2018-08-26 04:01:00 INFO 2020-11-12 15:23:56,089Z lrauvNc4ToNetcdf.py createSeries():241 depth : 13 v_t values found before 2018-08-25 20:18:00 and after 2018-08-26 04:01:00 INFO 2020-11-12 15:23:56,947Z lrauvNc4ToNetcdf.py createSeries():241 time : 12 v_t values found before 2018-08-25 20:18:00 and after 2018-08-26 04:01:00 INFO 2020-11-12 15:23:57,799Z lrauvNc4ToNetcdf.py processResampleNc4File():1059 Creating t variable of the time indexes INFO 2020-11-12 15:23:58,268Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group Aanderaa_O2 parameter mass_concentration_of_oxygen_in_sea_water renaming to oxygen INFO 2020-11-12 15:23:58,733Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group CTD_Seabird parameter sea_water_salinity renaming to salinity INFO 2020-11-12 15:23:59,198Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group CTD_Seabird parameter sea_water_temperature renaming to temperature INFO 2020-11-12 15:23:59,299Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group CTD_Seabird parameter bin_median_sea_water_salinity renaming to salinity INFO 2020-11-12 15:23:59,398Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group CTD_Seabird parameter bin_median_sea_water_temperature renaming to temperature INFO 2020-11-12 15:23:59,404Z lrauvNc4ToNetcdf.py createSeries():241 downwelling_photosynthetic_photon_flux_in_sea_water: 12 v_t values found before 2018-08-25 20:18:00 and after 2018-08-26 04:01:00 INFO 2020-11-12 15:24:00,245Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group PAR_Licor parameter downwelling_photosynthetic_photon_flux_in_sea_water renaming to PAR INFO 2020-11-12 15:24:00,250Z lrauvNc4ToNetcdf.py createSeries():241 mass_concentration_of_chlorophyll_in_sea_water: 5 v_t values found before 2018-08-25 20:18:00 and after 2018-08-26 04:01:00 INFO 2020-11-12 15:24:00,836Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group WetLabsBB2FL parameter mass_concentration_of_chlorophyll_in_sea_water renaming to chlorophyll INFO 2020-11-12 15:24:00,841Z lrauvNc4ToNetcdf.py createSeries():241 OutputChl: 5 v_t values found before 2018-08-25 20:18:00 and after 2018-08-26 04:01:00 INFO 2020-11-12 15:24:01,435Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group WetLabsBB2FL parameter OutputChl renaming to chl INFO 2020-11-12 15:24:01,440Z lrauvNc4ToNetcdf.py createSeries():241 Output470: 5 v_t values found before 2018-08-25 20:18:00 and after 2018-08-26 04:01:00 INFO 2020-11-12 15:24:02,037Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group WetLabsBB2FL parameter Output470 renaming to bbp470 INFO 2020-11-12 15:24:02,045Z lrauvNc4ToNetcdf.py createSeries():241 Output650: 5 v_t values found before 2018-08-25 20:18:00 and after 2018-08-26 04:01:00 INFO 2020-11-12 15:24:02,638Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group WetLabsBB2FL parameter Output650 renaming to bbp650 INFO 2020-11-12 15:24:02,736Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group WetLabsBB2FL parameter bin_mean_mass_concentration_of_chlorophyll_in_sea_water renaming to chlorophyll INFO 2020-11-12 15:24:02,833Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group WetLabsBB2FL parameter bin_median_mass_concentration_of_chlorophyll_in_sea_water renaming to chlorophyll INFO 2020-11-12 15:24:02,857Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group BPC1 parameter platform_battery_charge renaming to health_platform_battery_charge INFO 2020-11-12 15:24:02,873Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group BPC1 parameter platform_battery_voltage renaming to health_platform_average_voltage INFO 2020-11-12 15:24:02,880Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group NAL9602 parameter time_fix renaming to fix_time INFO 2020-11-12 15:24:02,886Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group NAL9602 parameter latitude_fix renaming to fix_latitude INFO 2020-11-12 15:24:02,892Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group NAL9602 parameter longitude_fix renaming to fix_longitude INFO 2020-11-12 15:24:02,894Z lrauvNc4ToNetcdf.py createSeries():241 platform_buoyancy_position: 1 v_t values found before 2018-08-25 20:18:00 and after 2018-08-26 04:01:00 INFO 2020-11-12 15:24:02,927Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group BuoyancyServo parameter platform_buoyancy_position renaming to control_inputs_buoyancy_position INFO 2020-11-12 15:24:02,931Z lrauvNc4ToNetcdf.py createSeries():241 platform_elevator_angle: 7 v_t values found before 2018-08-25 20:18:00 and after 2018-08-26 04:01:00 INFO 2020-11-12 15:24:03,314Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group ElevatorServo parameter platform_elevator_angle renaming to control_inputs_elevator_angle INFO 2020-11-12 15:24:03,316Z lrauvNc4ToNetcdf.py createSeries():241 platform_mass_position: 1 v_t values found before 2018-08-25 20:18:00 and after 2018-08-26 04:01:00 INFO 2020-11-12 15:24:03,354Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group MassServo parameter platform_mass_position renaming to control_inputs_mass_position INFO 2020-11-12 15:24:03,726Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group RudderServo parameter platform_rudder_angle renaming to control_inputs_rudder_angle INFO 2020-11-12 15:24:04,737Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group ThrusterServo parameter platform_propeller_rotation_rate renaming to control_inputs_propeller_rotation_rate INFO 2020-11-12 15:24:04,743Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group DeadReckonUsingSpeedCalculator parameter fix_residual_percent_distance_traveled renaming to fix_residual_percent_distance_traveled_DeadReckonUsingSpeedCalculator INFO 2020-11-12 15:24:04,750Z lrauvNc4ToNetcdf.py createSeries():241 longitude: 12 v_t values found before 2018-08-25 20:18:00 and after 2018-08-26 04:01:00 INFO 2020-11-12 15:24:05,586Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group DeadReckonUsingSpeedCalculator parameter longitude renaming to pose_longitude_DeadReckonUsingSpeedCalculator INFO 2020-11-12 15:24:05,592Z lrauvNc4ToNetcdf.py createSeries():241 latitude : 12 v_t values found before 2018-08-25 20:18:00 and after 2018-08-26 04:01:00 INFO 2020-11-12 15:24:06,429Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group DeadReckonUsingSpeedCalculator parameter latitude renaming to pose_latitude_DeadReckonUsingSpeedCalculator INFO 2020-11-12 15:24:06,436Z lrauvNc4ToNetcdf.py createSeries():241 depth : 12 v_t values found before 2018-08-25 20:18:00 and after 2018-08-26 04:01:00 INFO 2020-11-12 15:24:07,272Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group DeadReckonUsingSpeedCalculator parameter depth renaming to pose_depth_DeadReckonUsingSpeedCalculator INFO 2020-11-12 15:24:07,334Z lrauvNc4ToNetcdf.py createSeries():241 platform_pitch_angle: 13 v_t values found before 2018-08-25 20:18:00 and after 2018-08-26 04:01:00 INFO 2020-11-12 15:24:08,176Z lrauvNc4ToNetcdf.py createNav():506 platform_pitch_angle -> pitch: {'units': 'n/a', 'standard_name': 'platform_pitch_angle', 'coordinates': 'time depth latitude longitude'} INFO 2020-11-12 15:24:08,214Z lrauvNc4ToNetcdf.py createSeries():241 platform_roll_angle: 13 v_t values found before 2018-08-25 20:18:00 and after 2018-08-26 04:01:00 INFO 2020-11-12 15:24:09,062Z lrauvNc4ToNetcdf.py createNav():506 platform_roll_angle -> roll: {'units': 'rad', 'standard_name': 'platform_roll_angle', 'coordinates': 'time depth latitude longitude'} INFO 2020-11-12 15:24:09,100Z lrauvNc4ToNetcdf.py createSeries():241 platform_orientation: 13 v_t values found before 2018-08-25 20:18:00 and after 2018-08-26 04:01:00 INFO 2020-11-12 15:24:09,971Z lrauvNc4ToNetcdf.py createNav():506 platform_orientation -> yaw: {'units': 'n/a', 'standard_name': 'platform_yaw_angle', 'coordinates': 'time depth latitude longitude'} INFO 2020-11-12 15:24:09,972Z lrauvNc4ToNetcdf.py nudge_coords():651 /mbari/LRAUV/makai/missionlogs/2018/20180823_20180827/20180825T201838/201808252018_201808260401.nc4 INFO 2020-11-12 15:24:11,824Z lrauvNc4ToNetcdf.py nudge_coords():674 seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2020-11-12 15:24:11,825Z lrauvNc4ToNetcdf.py nudge_coords():691 - - - 0 0.00 - - - INFO 2020-11-12 15:24:11,827Z lrauvNc4ToNetcdf.py nudge_coords():724 0: 0.380 -0.0003063 0.0000133 321 2.49 -0.67 0.99 2018-08-25 20:33:24.395442009 INFO 2020-11-12 15:24:11,832Z lrauvNc4ToNetcdf.py nudge_coords():724 1: 0.347 -0.0001632 0.0000500 349 2.87 -2.17 3.23 2018-08-25 20:36:16.872937918 INFO 2020-11-12 15:24:11,836Z lrauvNc4ToNetcdf.py nudge_coords():724 2: 0.352 -0.0059459 0.0013930 6361 43.72 -3.96 5.90 2018-08-25 21:20:00.702157021 INFO 2020-11-12 15:24:11,842Z lrauvNc4ToNetcdf.py nudge_coords():724 3: 0.352 0.0000973 0.0000945 1029 7.42 -1.58 2.36 2018-08-25 21:27:26.225347996 INFO 2020-11-12 15:24:11,846Z lrauvNc4ToNetcdf.py nudge_coords():724 4: 0.323 -0.0003550 -0.0003243 1221 9.20 4.39 -6.53 2018-08-25 21:36:38.564958096 INFO 2020-11-12 15:24:11,851Z lrauvNc4ToNetcdf.py nudge_coords():724 5: 0.351 0.0014610 0.0008888 980 7.50 -14.74 21.97 2018-08-25 21:44:08.814486027 INFO 2020-11-12 15:24:11,856Z lrauvNc4ToNetcdf.py nudge_coords():724 6: 0.262 -0.0041537 0.0005931 4733 31.94 -2.31 3.44 2018-08-25 22:16:05.458853006 INFO 2020-11-12 15:24:11,861Z lrauvNc4ToNetcdf.py nudge_coords():724 7: 0.320 -0.0000437 0.0000943 228 2.04 -5.76 8.58 2018-08-25 22:18:07.981487036 INFO 2020-11-12 15:24:11,865Z lrauvNc4ToNetcdf.py nudge_coords():724 8: 0.336 -0.0024877 -0.0010430 4776 32.28 3.99 -5.99 2018-08-25 22:50:24.979964972 INFO 2020-11-12 15:24:11,870Z lrauvNc4ToNetcdf.py nudge_coords():724 9: 0.346 -0.0001043 0.0002745 521 3.97 -8.54 12.82 2018-08-25 22:54:23.480220079 INFO 2020-11-12 15:24:11,875Z lrauvNc4ToNetcdf.py nudge_coords():724 10: 0.364 -0.0023044 -0.0006250 4733 31.86 2.40 -3.64 2018-08-25 23:26:15.499418974 INFO 2020-11-12 15:24:11,880Z lrauvNc4ToNetcdf.py nudge_coords():724 11: 0.344 -0.0011715 -0.0000298 154 1.31 2.79 -4.22 2018-08-25 23:27:34.517688036 INFO 2020-11-12 15:24:11,884Z lrauvNc4ToNetcdf.py nudge_coords():724 12: 0.380 -0.0035210 -0.0002368 4690 31.54 0.91 -1.39 2018-08-25 23:59:07.531589985 INFO 2020-11-12 15:24:11,890Z lrauvNc4ToNetcdf.py nudge_coords():724 13: 0.345 -0.0001512 -0.0002715 391 3.21 10.26 -15.69 2018-08-26 00:02:20.436959982 INFO 2020-11-12 15:24:11,894Z lrauvNc4ToNetcdf.py nudge_coords():724 14: 0.354 -0.0035955 -0.0010931 4775 32.07 4.10 -6.32 2018-08-26 00:34:24.778033972 INFO 2020-11-12 15:24:11,899Z lrauvNc4ToNetcdf.py nudge_coords():724 15: 0.350 0.0007092 0.0000637 228 2.11 -3.62 5.59 2018-08-26 00:36:31.943574905 INFO 2020-11-12 15:24:11,904Z lrauvNc4ToNetcdf.py nudge_coords():724 16: 0.337 -0.0021819 -0.0016017 4605 30.89 6.17 -9.61 2018-08-26 01:07:25.875721931 INFO 2020-11-12 15:24:11,909Z lrauvNc4ToNetcdf.py nudge_coords():724 17: 0.341 0.0001945 0.0002450 444 3.50 -8.34 12.99 2018-08-26 01:10:56.036814928 INFO 2020-11-12 15:24:11,913Z lrauvNc4ToNetcdf.py nudge_coords():724 18: 0.338 -0.0016419 0.0010004 4767 31.97 -3.75 5.80 2018-08-26 01:42:54.877758026 INFO 2020-11-12 15:24:11,918Z lrauvNc4ToNetcdf.py nudge_coords():724 19: 0.335 -0.0001425 -0.0000153 270 2.23 0.82 -1.28 2018-08-26 01:45:09.060908079 INFO 2020-11-12 15:24:11,923Z lrauvNc4ToNetcdf.py nudge_coords():724 20: 0.336 -0.0023495 0.0022491 4946 33.23 -8.18 12.54 2018-08-26 02:18:23.048001051 INFO 2020-11-12 15:24:11,928Z lrauvNc4ToNetcdf.py nudge_coords():724 21: 0.340 0.0000173 0.0000045 97 1.14 -0.48 0.73 2018-08-26 02:19:32.136059046 INFO 2020-11-12 15:24:11,933Z lrauvNc4ToNetcdf.py nudge_coords():724 22: 0.075 -0.0050140 0.0031381 4778 32.07 -11.94 18.13 2018-08-26 02:51:36.936861038 INFO 2020-11-12 15:24:11,938Z lrauvNc4ToNetcdf.py nudge_coords():724 23: 0.324 -0.0000360 -0.0000097 27 0.50 2.36 -3.59 2018-08-26 02:52:07.056183100 INFO 2020-11-12 15:24:11,942Z lrauvNc4ToNetcdf.py nudge_coords():724 24: 0.297 -0.0011552 0.0011942 4829 32.41 -4.55 6.83 2018-08-26 03:24:32.023632050 INFO 2020-11-12 15:24:11,947Z lrauvNc4ToNetcdf.py nudge_coords():724 25: 0.333 -0.0000872 -0.0000177 225 2.00 1.09 -1.63 2018-08-26 03:26:32.586625099 INFO 2020-11-12 15:24:11,952Z lrauvNc4ToNetcdf.py nudge_coords():724 26: 0.332 -0.0018246 0.0019556 4667 31.49 -7.74 11.51 2018-08-26 03:58:02.236632109 INFO 2020-11-12 15:24:11,957Z lrauvNc4ToNetcdf.py nudge_coords():754 28: - - - 383 3.09 - - INFO 2020-11-12 15:24:11,957Z lrauvNc4ToNetcdf.py nudge_coords():758 Points in final series = 65528 INFO 2020-11-12 15:24:11,987Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():550 http://odss.mbari.org/trackingdb/position/makai_ac/between/20180825T191838/20180826T050108/data.csv INFO 2020-11-12 15:24:12,039Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():573 Found 0 position values from the Tracking database INFO 2020-11-12 15:24:12,044Z lrauvNc4ToNetcdf.py processResampleNc4File():1190 ['oxygen', 'salinity', 'temperature', 'PAR', 'chlorophyll', 'chl', 'bbp470', 'bbp650', 'health_platform_battery_charge', 'health_platform_average_voltage', 'fix_time', 'fix_latitude', 'fix_longitude', 'control_inputs_buoyancy_position', 'control_inputs_elevator_angle', 'control_inputs_mass_position', 'control_inputs_rudder_angle', 'control_inputs_propeller_rotation_rate', 'fix_residual_percent_distance_traveled_DeadReckonUsingSpeedCalculator', 'pose_longitude_DeadReckonUsingSpeedCalculator', 'pose_latitude_DeadReckonUsingSpeedCalculator', 'pose_depth_DeadReckonUsingSpeedCalculator', 'pitch', 'roll', 'yaw', 'latitude', 'longitude', 'depth', 'time'] INFO 2020-11-12 15:24:12,570Z lrauvNc4ToNetcdf.py processResampleNc4File():1193 Wrote /mbari/LRAUV/makai/missionlogs/2018/20180823_20180827/20180825T201838/201808252018_201808260401_2S_scieng.nc