INFO 2020-11-12 15:21:50,958Z lrauvNc4ToNetcdf.py processResampleNc4File():1043 Reading /mbari/LRAUV/makai/missionlogs/2018/20180823_20180827/20180824T193359/201808241933_201808250028.nc4 file...
INFO 2020-11-12 15:21:50,958Z lrauvNc4ToNetcdf.py processResampleNc4File():1044 After copying to /tmp/201808241933_201808250028.nc4
INFO 2020-11-12 15:21:52,611Z lrauvNc4ToNetcdf.py processResampleNc4File():1046 Read file /mbari/LRAUV/makai/missionlogs/2018/20180823_20180827/20180824T193359/201808241933_201808250028.nc4
INFO 2020-11-12 15:21:52,655Z lrauvNc4ToNetcdf.py createSeries():241 latitude :   64 v_t values found before 2018-08-24 19:33:00 and after 2018-08-25 00:28:00
INFO 2020-11-12 15:21:54,112Z lrauvNc4ToNetcdf.py createSeries():241 longitude:   64 v_t values found before 2018-08-24 19:33:00 and after 2018-08-25 00:28:00
INFO 2020-11-12 15:21:55,573Z lrauvNc4ToNetcdf.py createSeries():241 depth    :   64 v_t values found before 2018-08-24 19:33:00 and after 2018-08-25 00:28:00
INFO 2020-11-12 15:21:57,056Z lrauvNc4ToNetcdf.py createSeries():241 time     :   63 v_t values found before 2018-08-24 19:33:00 and after 2018-08-25 00:28:00
INFO 2020-11-12 15:21:57,666Z lrauvNc4ToNetcdf.py createSeries():241 latitude :   64 v_t values found before 2018-08-24 19:33:00 and after 2018-08-25 00:28:00
INFO 2020-11-12 15:21:59,116Z lrauvNc4ToNetcdf.py createSeries():241 longitude:   64 v_t values found before 2018-08-24 19:33:00 and after 2018-08-25 00:28:00
INFO 2020-11-12 15:22:00,567Z lrauvNc4ToNetcdf.py createSeries():241 depth    :   64 v_t values found before 2018-08-24 19:33:00 and after 2018-08-25 00:28:00
INFO 2020-11-12 15:22:02,019Z lrauvNc4ToNetcdf.py createSeries():241 time     :   63 v_t values found before 2018-08-24 19:33:00 and after 2018-08-25 00:28:00
INFO 2020-11-12 15:22:02,652Z lrauvNc4ToNetcdf.py createSeries():241 latitude :   64 v_t values found before 2018-08-24 19:33:00 and after 2018-08-25 00:28:00
INFO 2020-11-12 15:22:04,077Z lrauvNc4ToNetcdf.py createSeries():241 longitude:   64 v_t values found before 2018-08-24 19:33:00 and after 2018-08-25 00:28:00
INFO 2020-11-12 15:22:05,529Z lrauvNc4ToNetcdf.py createSeries():241 depth    :   64 v_t values found before 2018-08-24 19:33:00 and after 2018-08-25 00:28:00
INFO 2020-11-12 15:22:06,980Z lrauvNc4ToNetcdf.py createSeries():241 time     :   63 v_t values found before 2018-08-24 19:33:00 and after 2018-08-25 00:28:00
INFO 2020-11-12 15:22:07,584Z lrauvNc4ToNetcdf.py createSeries():241 latitude :   64 v_t values found before 2018-08-24 19:33:00 and after 2018-08-25 00:28:00
INFO 2020-11-12 15:22:09,053Z lrauvNc4ToNetcdf.py createSeries():241 longitude:   64 v_t values found before 2018-08-24 19:33:00 and after 2018-08-25 00:28:00
INFO 2020-11-12 15:22:10,494Z lrauvNc4ToNetcdf.py createSeries():241 depth    :   64 v_t values found before 2018-08-24 19:33:00 and after 2018-08-25 00:28:00
INFO 2020-11-12 15:22:11,940Z lrauvNc4ToNetcdf.py createSeries():241 time     :   63 v_t values found before 2018-08-24 19:33:00 and after 2018-08-25 00:28:00
INFO 2020-11-12 15:22:12,505Z lrauvNc4ToNetcdf.py processResampleNc4File():1059 Creating t variable of the time indexes
INFO 2020-11-12 15:22:12,809Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group Aanderaa_O2 parameter mass_concentration_of_oxygen_in_sea_water renaming to oxygen
INFO 2020-11-12 15:22:13,113Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group CTD_Seabird parameter sea_water_salinity renaming to salinity
INFO 2020-11-12 15:22:13,416Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group CTD_Seabird parameter sea_water_temperature renaming to temperature
INFO 2020-11-12 15:22:13,426Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group CTD_Seabird parameter bin_median_sea_water_salinity renaming to salinity
INFO 2020-11-12 15:22:13,436Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group CTD_Seabird parameter bin_median_sea_water_temperature renaming to temperature
INFO 2020-11-12 15:22:13,441Z lrauvNc4ToNetcdf.py createSeries():241 downwelling_photosynthetic_photon_flux_in_sea_water:   63 v_t values found before 2018-08-24 19:33:00 and after 2018-08-25 00:28:00
INFO 2020-11-12 15:22:13,981Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group PAR_Licor parameter downwelling_photosynthetic_photon_flux_in_sea_water renaming to PAR
INFO 2020-11-12 15:22:14,573Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group WetLabsBB2FL parameter mass_concentration_of_chlorophyll_in_sea_water renaming to chlorophyll
INFO 2020-11-12 15:22:15,161Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group WetLabsBB2FL parameter OutputChl renaming to chl
INFO 2020-11-12 15:22:15,742Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group WetLabsBB2FL parameter Output470 renaming to bbp470
INFO 2020-11-12 15:22:16,324Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group WetLabsBB2FL parameter Output650 renaming to bbp650
INFO 2020-11-12 15:22:16,390Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group WetLabsBB2FL parameter bin_mean_mass_concentration_of_chlorophyll_in_sea_water renaming to chlorophyll
INFO 2020-11-12 15:22:16,455Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group WetLabsBB2FL parameter bin_median_mass_concentration_of_chlorophyll_in_sea_water renaming to chlorophyll
INFO 2020-11-12 15:22:16,476Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group BPC1 parameter platform_battery_charge renaming to health_platform_battery_charge
INFO 2020-11-12 15:22:16,491Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group BPC1 parameter platform_battery_voltage renaming to health_platform_average_voltage
INFO 2020-11-12 15:22:16,498Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group NAL9602 parameter time_fix renaming to fix_time
INFO 2020-11-12 15:22:16,504Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group NAL9602 parameter latitude_fix renaming to fix_latitude
INFO 2020-11-12 15:22:16,510Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group NAL9602 parameter longitude_fix renaming to fix_longitude
INFO 2020-11-12 15:22:16,524Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group BuoyancyServo parameter platform_buoyancy_position renaming to control_inputs_buoyancy_position
INFO 2020-11-12 15:22:16,593Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group ElevatorServo parameter platform_elevator_angle renaming to control_inputs_elevator_angle
INFO 2020-11-12 15:22:16,600Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group MassServo parameter platform_mass_position renaming to control_inputs_mass_position
INFO 2020-11-12 15:22:16,622Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group RudderServo parameter platform_rudder_angle renaming to control_inputs_rudder_angle
INFO 2020-11-12 15:22:17,343Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group ThrusterServo parameter platform_propeller_rotation_rate renaming to control_inputs_propeller_rotation_rate
INFO 2020-11-12 15:22:17,349Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group DeadReckonUsingSpeedCalculator parameter fix_residual_percent_distance_traveled renaming to fix_residual_percent_distance_traveled_DeadReckonUsingSpeedCalculator
INFO 2020-11-12 15:22:17,356Z lrauvNc4ToNetcdf.py createSeries():241 longitude:   64 v_t values found before 2018-08-24 19:33:00 and after 2018-08-25 00:28:00
INFO 2020-11-12 15:22:17,910Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group DeadReckonUsingSpeedCalculator parameter longitude renaming to pose_longitude_DeadReckonUsingSpeedCalculator
INFO 2020-11-12 15:22:17,916Z lrauvNc4ToNetcdf.py createSeries():241 latitude :   64 v_t values found before 2018-08-24 19:33:00 and after 2018-08-25 00:28:00
INFO 2020-11-12 15:22:18,469Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group DeadReckonUsingSpeedCalculator parameter latitude renaming to pose_latitude_DeadReckonUsingSpeedCalculator
INFO 2020-11-12 15:22:18,476Z lrauvNc4ToNetcdf.py createSeries():241 depth    :   64 v_t values found before 2018-08-24 19:33:00 and after 2018-08-25 00:28:00
INFO 2020-11-12 15:22:19,031Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group DeadReckonUsingSpeedCalculator parameter depth renaming to pose_depth_DeadReckonUsingSpeedCalculator
INFO 2020-11-12 15:22:19,088Z lrauvNc4ToNetcdf.py createSeries():241 platform_pitch_angle:   61 v_t values found before 2018-08-24 19:33:00 and after 2018-08-25 00:28:00
INFO 2020-11-12 15:22:19,661Z lrauvNc4ToNetcdf.py createNav():506 platform_pitch_angle -> pitch: {'units': 'n/a', 'standard_name': 'platform_pitch_angle', 'coordinates': 'time depth latitude longitude'}
INFO 2020-11-12 15:22:19,707Z lrauvNc4ToNetcdf.py createSeries():241 platform_roll_angle:   61 v_t values found before 2018-08-24 19:33:00 and after 2018-08-25 00:28:00
INFO 2020-11-12 15:22:20,295Z lrauvNc4ToNetcdf.py createNav():506 platform_roll_angle -> roll: {'units': 'rad', 'standard_name': 'platform_roll_angle', 'coordinates': 'time depth latitude longitude'}
INFO 2020-11-12 15:22:20,340Z lrauvNc4ToNetcdf.py createSeries():241 platform_orientation:   61 v_t values found before 2018-08-24 19:33:00 and after 2018-08-25 00:28:00
INFO 2020-11-12 15:22:20,922Z lrauvNc4ToNetcdf.py createNav():506 platform_orientation -> yaw: {'units': 'n/a', 'standard_name': 'platform_yaw_angle', 'coordinates': 'time depth latitude longitude'}
INFO 2020-11-12 15:22:20,922Z lrauvNc4ToNetcdf.py nudge_coords():651 /mbari/LRAUV/makai/missionlogs/2018/20180823_20180827/20180824T193359/201808241933_201808250028.nc4
INFO 2020-11-12 15:22:20,993Z lrauvNc4ToNetcdf.py var_series():601 Removing bad longitude times from /mbari/LRAUV/makai/missionlogs/2018/20180823_20180827/20180824T193359/201808241933_201808250028.nc4 ([index], [values]): [902], ['3681-10-05 04:21:02.914757']
INFO 2020-11-12 15:22:21,580Z lrauvNc4ToNetcdf.py var_series():601 Removing bad latitude times from /mbari/LRAUV/makai/missionlogs/2018/20180823_20180827/20180824T193359/201808241933_201808250028.nc4 ([index], [values]): [902], ['3681-10-05 04:21:02.914757']
INFO 2020-11-12 15:22:22,280Z lrauvNc4ToNetcdf.py nudge_coords():674 seg#  end_sec_diff end_lon_diff end_lat_diff len(segi)   seg_min u_drift (cm/s) v_drift (cm/s)     start datetime of segment
INFO 2020-11-12 15:22:22,281Z lrauvNc4ToNetcdf.py nudge_coords():691                  -            -            -         0      0.00              -              -                             -
INFO 2020-11-12 15:22:22,282Z lrauvNc4ToNetcdf.py nudge_coords():724    0:        0.340   -0.0002895    0.0003177       907      7.57          -4.49           7.78 2018-08-24 19:43:51.531810044
INFO 2020-11-12 15:22:22,287Z lrauvNc4ToNetcdf.py nudge_coords():724    1:        0.347   -0.0001078    0.0000407       293      2.53          -1.72           2.98 2018-08-24 19:46:23.795722008
INFO 2020-11-12 15:22:22,292Z lrauvNc4ToNetcdf.py nudge_coords():724    2:        0.346    0.0000241    0.0000002        13      0.08          -0.32           0.56 2018-08-24 19:46:29.070477009
INFO 2020-11-12 15:22:22,296Z lrauvNc4ToNetcdf.py nudge_coords():724    3:        0.339    0.0001133   -0.0001075       319      2.54           4.53          -7.84 2018-08-24 19:49:01.880773067
INFO 2020-11-12 15:22:22,301Z lrauvNc4ToNetcdf.py nudge_coords():724    4:        0.303   -0.0164437    0.0012001     36261    242.26          -0.53           0.92 2018-08-24 23:51:18.058284044
INFO 2020-11-12 15:22:22,308Z lrauvNc4ToNetcdf.py nudge_coords():724    5:        0.348    0.0002510    0.0009427       956      6.99         -14.32          24.98 2018-08-24 23:58:18.046602964
INFO 2020-11-12 15:22:22,313Z lrauvNc4ToNetcdf.py nudge_coords():724    6:        0.346   -0.0000943   -0.0008420       945      7.14          12.55         -21.86 2018-08-25 00:05:26.647707939
INFO 2020-11-12 15:22:22,318Z lrauvNc4ToNetcdf.py nudge_coords():724    7:        0.377   -0.0000077    0.0000539       196      1.91          -3.00           5.23 2018-08-25 00:07:21.881094933
INFO 2020-11-12 15:22:22,322Z lrauvNc4ToNetcdf.py nudge_coords():724    8:        0.310    0.0000115    0.0000438       167      1.59          -2.92           5.09 2018-08-25 00:08:58.029441118
INFO 2020-11-12 15:22:22,327Z lrauvNc4ToNetcdf.py nudge_coords():724    9:        0.352   -0.0020836    0.0009835      2516     16.92          -6.24          10.77 2018-08-25 00:25:53.481312990
INFO 2020-11-12 15:22:22,331Z lrauvNc4ToNetcdf.py nudge_coords():754   11:            -            -            -       338      2.65              -              -
INFO 2020-11-12 15:22:22,331Z lrauvNc4ToNetcdf.py nudge_coords():758 Points in final series = 42911
INFO 2020-11-12 15:22:22,367Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():550 http://odss.mbari.org/trackingdb/position/makai_ac/between/20180824T183359/20180825T012832/data.csv
INFO 2020-11-12 15:22:22,394Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():573 Found 0 position values from the Tracking database
INFO 2020-11-12 15:22:22,398Z lrauvNc4ToNetcdf.py processResampleNc4File():1190 ['oxygen', 'salinity', 'temperature', 'PAR', 'chlorophyll', 'chl', 'bbp470', 'bbp650', 'health_platform_battery_charge', 'health_platform_average_voltage', 'fix_time', 'fix_latitude', 'fix_longitude', 'control_inputs_buoyancy_position', 'control_inputs_elevator_angle', 'control_inputs_mass_position', 'control_inputs_rudder_angle', 'control_inputs_propeller_rotation_rate', 'fix_residual_percent_distance_traveled_DeadReckonUsingSpeedCalculator', 'pose_longitude_DeadReckonUsingSpeedCalculator', 'pose_latitude_DeadReckonUsingSpeedCalculator', 'pose_depth_DeadReckonUsingSpeedCalculator', 'pitch', 'roll', 'yaw', 'latitude', 'longitude', 'depth', 'time']
INFO 2020-11-12 15:22:22,766Z lrauvNc4ToNetcdf.py processResampleNc4File():1193 Wrote /mbari/LRAUV/makai/missionlogs/2018/20180823_20180827/20180824T193359/201808241933_201808250028_2S_scieng.nc