INFO 2020-11-12 15:21:08,703Z lrauvNc4ToNetcdf.py processResampleNc4File():1043 Reading /mbari/LRAUV/makai/missionlogs/2018/20180823_20180827/20180824T154853/201808241549_201808241933.nc4 file...
INFO 2020-11-12 15:21:08,703Z lrauvNc4ToNetcdf.py processResampleNc4File():1044 After copying to /tmp/201808241549_201808241933.nc4
INFO 2020-11-12 15:21:10,155Z lrauvNc4ToNetcdf.py processResampleNc4File():1046 Read file /mbari/LRAUV/makai/missionlogs/2018/20180823_20180827/20180824T154853/201808241549_201808241933.nc4
INFO 2020-11-12 15:21:10,194Z lrauvNc4ToNetcdf.py createSeries():241 latitude :  137 v_t values found before 2018-08-24 15:49:00 and after 2018-08-24 19:33:00
INFO 2020-11-12 15:21:12,356Z lrauvNc4ToNetcdf.py createSeries():241 longitude:  137 v_t values found before 2018-08-24 15:49:00 and after 2018-08-24 19:33:00
INFO 2020-11-12 15:21:14,517Z lrauvNc4ToNetcdf.py createSeries():241 depth    :  141 v_t values found before 2018-08-24 15:49:00 and after 2018-08-24 19:33:00
INFO 2020-11-12 15:21:16,770Z lrauvNc4ToNetcdf.py createSeries():241 time     :  135 v_t values found before 2018-08-24 15:49:00 and after 2018-08-24 19:33:00
INFO 2020-11-12 15:21:17,228Z lrauvNc4ToNetcdf.py createSeries():241 latitude :  137 v_t values found before 2018-08-24 15:49:00 and after 2018-08-24 19:33:00
INFO 2020-11-12 15:21:19,393Z lrauvNc4ToNetcdf.py createSeries():241 longitude:  137 v_t values found before 2018-08-24 15:49:00 and after 2018-08-24 19:33:00
INFO 2020-11-12 15:21:21,591Z lrauvNc4ToNetcdf.py createSeries():241 depth    :  141 v_t values found before 2018-08-24 15:49:00 and after 2018-08-24 19:33:00
INFO 2020-11-12 15:21:23,829Z lrauvNc4ToNetcdf.py createSeries():241 time     :  135 v_t values found before 2018-08-24 15:49:00 and after 2018-08-24 19:33:00
INFO 2020-11-12 15:21:24,287Z lrauvNc4ToNetcdf.py createSeries():241 latitude :  137 v_t values found before 2018-08-24 15:49:00 and after 2018-08-24 19:33:00
INFO 2020-11-12 15:21:26,474Z lrauvNc4ToNetcdf.py createSeries():241 longitude:  137 v_t values found before 2018-08-24 15:49:00 and after 2018-08-24 19:33:00
INFO 2020-11-12 15:21:28,632Z lrauvNc4ToNetcdf.py createSeries():241 depth    :  141 v_t values found before 2018-08-24 15:49:00 and after 2018-08-24 19:33:00
INFO 2020-11-12 15:21:30,841Z lrauvNc4ToNetcdf.py createSeries():241 time     :  135 v_t values found before 2018-08-24 15:49:00 and after 2018-08-24 19:33:00
INFO 2020-11-12 15:21:31,303Z lrauvNc4ToNetcdf.py createSeries():241 latitude :  137 v_t values found before 2018-08-24 15:49:00 and after 2018-08-24 19:33:00
INFO 2020-11-12 15:21:33,473Z lrauvNc4ToNetcdf.py createSeries():241 longitude:  137 v_t values found before 2018-08-24 15:49:00 and after 2018-08-24 19:33:00
INFO 2020-11-12 15:21:35,627Z lrauvNc4ToNetcdf.py createSeries():241 depth    :  141 v_t values found before 2018-08-24 15:49:00 and after 2018-08-24 19:33:00
INFO 2020-11-12 15:21:37,874Z lrauvNc4ToNetcdf.py createSeries():241 time     :  135 v_t values found before 2018-08-24 15:49:00 and after 2018-08-24 19:33:00
INFO 2020-11-12 15:21:38,298Z lrauvNc4ToNetcdf.py processResampleNc4File():1059 Creating t variable of the time indexes
INFO 2020-11-12 15:21:38,456Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group Aanderaa_O2 parameter mass_concentration_of_oxygen_in_sea_water renaming to oxygen
INFO 2020-11-12 15:21:38,605Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group CTD_Seabird parameter sea_water_salinity renaming to salinity
INFO 2020-11-12 15:21:38,755Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group CTD_Seabird parameter sea_water_temperature renaming to temperature
INFO 2020-11-12 15:21:38,757Z lrauvNc4ToNetcdf.py processResampleNc4File():1097 Variable bin_median_sea_water_salinity empty so skipping
INFO 2020-11-12 15:21:38,760Z lrauvNc4ToNetcdf.py processResampleNc4File():1097 Variable bin_median_sea_water_temperature empty so skipping
INFO 2020-11-12 15:21:38,764Z lrauvNc4ToNetcdf.py createSeries():241 downwelling_photosynthetic_photon_flux_in_sea_water:  136 v_t values found before 2018-08-24 15:49:00 and after 2018-08-24 19:33:00
INFO 2020-11-12 15:21:39,187Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group PAR_Licor parameter downwelling_photosynthetic_photon_flux_in_sea_water renaming to PAR
INFO 2020-11-12 15:21:39,466Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group WetLabsBB2FL parameter mass_concentration_of_chlorophyll_in_sea_water renaming to chlorophyll
INFO 2020-11-12 15:21:39,747Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group WetLabsBB2FL parameter OutputChl renaming to chl
INFO 2020-11-12 15:21:40,025Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group WetLabsBB2FL parameter Output470 renaming to bbp470
INFO 2020-11-12 15:21:40,306Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group WetLabsBB2FL parameter Output650 renaming to bbp650
INFO 2020-11-12 15:21:40,341Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group WetLabsBB2FL parameter bin_mean_mass_concentration_of_chlorophyll_in_sea_water renaming to chlorophyll
INFO 2020-11-12 15:21:40,378Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group WetLabsBB2FL parameter bin_median_mass_concentration_of_chlorophyll_in_sea_water renaming to chlorophyll
INFO 2020-11-12 15:21:40,394Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group BPC1 parameter platform_battery_charge renaming to health_platform_battery_charge
INFO 2020-11-12 15:21:40,409Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group BPC1 parameter platform_battery_voltage renaming to health_platform_average_voltage
INFO 2020-11-12 15:21:40,415Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group NAL9602 parameter time_fix renaming to fix_time
INFO 2020-11-12 15:21:40,421Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group NAL9602 parameter latitude_fix renaming to fix_latitude
INFO 2020-11-12 15:21:40,427Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group NAL9602 parameter longitude_fix renaming to fix_longitude
INFO 2020-11-12 15:21:40,469Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group BuoyancyServo parameter platform_buoyancy_position renaming to control_inputs_buoyancy_position
INFO 2020-11-12 15:21:40,509Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group ElevatorServo parameter platform_elevator_angle renaming to control_inputs_elevator_angle
INFO 2020-11-12 15:21:40,518Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group MassServo parameter platform_mass_position renaming to control_inputs_mass_position
INFO 2020-11-12 15:21:40,616Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group RudderServo parameter platform_rudder_angle renaming to control_inputs_rudder_angle
INFO 2020-11-12 15:21:40,839Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group ThrusterServo parameter platform_propeller_rotation_rate renaming to control_inputs_propeller_rotation_rate
INFO 2020-11-12 15:21:40,845Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group DeadReckonUsingSpeedCalculator parameter fix_residual_percent_distance_traveled renaming to fix_residual_percent_distance_traveled_DeadReckonUsingSpeedCalculator
INFO 2020-11-12 15:21:40,849Z lrauvNc4ToNetcdf.py createSeries():241 longitude:  137 v_t values found before 2018-08-24 15:49:00 and after 2018-08-24 19:33:00
INFO 2020-11-12 15:21:41,268Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group DeadReckonUsingSpeedCalculator parameter longitude renaming to pose_longitude_DeadReckonUsingSpeedCalculator
INFO 2020-11-12 15:21:41,272Z lrauvNc4ToNetcdf.py createSeries():241 latitude :  137 v_t values found before 2018-08-24 15:49:00 and after 2018-08-24 19:33:00
INFO 2020-11-12 15:21:41,689Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group DeadReckonUsingSpeedCalculator parameter latitude renaming to pose_latitude_DeadReckonUsingSpeedCalculator
INFO 2020-11-12 15:21:41,693Z lrauvNc4ToNetcdf.py createSeries():241 depth    :  137 v_t values found before 2018-08-24 15:49:00 and after 2018-08-24 19:33:00
INFO 2020-11-12 15:21:42,107Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group DeadReckonUsingSpeedCalculator parameter depth renaming to pose_depth_DeadReckonUsingSpeedCalculator
INFO 2020-11-12 15:21:42,145Z lrauvNc4ToNetcdf.py createSeries():241 platform_pitch_angle:  136 v_t values found before 2018-08-24 15:49:00 and after 2018-08-24 19:33:00
INFO 2020-11-12 15:21:44,230Z lrauvNc4ToNetcdf.py createNav():506 platform_pitch_angle -> pitch: {'units': 'n/a', 'standard_name': 'platform_pitch_angle', 'coordinates': 'time depth latitude longitude'}
INFO 2020-11-12 15:21:44,268Z lrauvNc4ToNetcdf.py createSeries():241 platform_roll_angle:  136 v_t values found before 2018-08-24 15:49:00 and after 2018-08-24 19:33:00
INFO 2020-11-12 15:21:46,353Z lrauvNc4ToNetcdf.py createNav():506 platform_roll_angle -> roll: {'units': 'rad', 'standard_name': 'platform_roll_angle', 'coordinates': 'time depth latitude longitude'}
INFO 2020-11-12 15:21:46,390Z lrauvNc4ToNetcdf.py createSeries():241 platform_orientation:  136 v_t values found before 2018-08-24 15:49:00 and after 2018-08-24 19:33:00
INFO 2020-11-12 15:21:48,493Z lrauvNc4ToNetcdf.py createNav():506 platform_orientation -> yaw: {'units': 'n/a', 'standard_name': 'platform_yaw_angle', 'coordinates': 'time depth latitude longitude'}
INFO 2020-11-12 15:21:48,494Z lrauvNc4ToNetcdf.py nudge_coords():651 /mbari/LRAUV/makai/missionlogs/2018/20180823_20180827/20180824T154853/201808241549_201808241933.nc4
INFO 2020-11-12 15:21:48,530Z lrauvNc4ToNetcdf.py var_series():601 Removing bad longitude times from /mbari/LRAUV/makai/missionlogs/2018/20180823_20180827/20180824T154853/201808241549_201808241933.nc4 ([index], [values]): [  600 12559 23371], ['2915-04-15 06:11:34.921120', '3611-10-10 22:29:16.715660', '2515-04-01 00:02:16.197411']
INFO 2020-11-12 15:21:48,971Z lrauvNc4ToNetcdf.py var_series():601 Removing bad latitude times from /mbari/LRAUV/makai/missionlogs/2018/20180823_20180827/20180824T154853/201808241549_201808241933.nc4 ([index], [values]): [  600 12559 23371], ['2915-04-15 06:11:34.921120', '3611-10-10 22:29:16.715660', '2515-04-01 00:02:16.197411']
INFO 2020-11-12 15:21:49,512Z lrauvNc4ToNetcdf.py nudge_coords():674 seg#  end_sec_diff end_lon_diff end_lat_diff len(segi)   seg_min u_drift (cm/s) v_drift (cm/s)     start datetime of segment
INFO 2020-11-12 15:21:49,514Z lrauvNc4ToNetcdf.py nudge_coords():691                  -            -            -         0      0.00              -              -                             -
INFO 2020-11-12 15:21:49,515Z lrauvNc4ToNetcdf.py nudge_coords():724    0:        0.332   -0.0000403    0.0000572       158      1.26          -4.65           8.40 2018-08-24 15:52:49.047828913
INFO 2020-11-12 15:21:49,520Z lrauvNc4ToNetcdf.py nudge_coords():724    1:        0.329   -0.0001132    0.0001770      1065      8.37          -2.17           3.92 2018-08-24 16:01:11.774893999
INFO 2020-11-12 15:21:49,524Z lrauvNc4ToNetcdf.py nudge_coords():724    2:        0.342   -0.0000890    0.0000857       259      2.32          -3.79           6.85 2018-08-24 16:03:31.181653976
INFO 2020-11-12 15:21:49,529Z lrauvNc4ToNetcdf.py nudge_coords():724    3:        0.358   -0.0055234    0.0045035      9676     64.60          -7.43          12.92 2018-08-24 17:08:07.348345995
INFO 2020-11-12 15:21:49,534Z lrauvNc4ToNetcdf.py nudge_coords():724    4:        0.410    0.0011488    0.0009257      1943     15.10          -6.52          11.36 2018-08-24 17:23:13.658432007
INFO 2020-11-12 15:21:49,539Z lrauvNc4ToNetcdf.py nudge_coords():724    5:        0.347   -0.0003808   -0.0004152       717      5.58           7.92         -13.78 2018-08-24 17:28:49.183712959
INFO 2020-11-12 15:21:49,544Z lrauvNc4ToNetcdf.py nudge_coords():724    6:        0.351   -0.0056220    0.0000978      2571     17.15          -0.61           1.06 2018-08-24 17:45:58.597332001
INFO 2020-11-12 15:21:49,549Z lrauvNc4ToNetcdf.py nudge_coords():724    7:        0.355    0.0040548    0.0012988      1330      9.70         -14.38          24.80 2018-08-24 17:55:41.269316912
INFO 2020-11-12 15:21:49,554Z lrauvNc4ToNetcdf.py nudge_coords():724    8:        0.347   -0.0000800    0.0016870      1139      8.16         -22.17          38.31 2018-08-24 18:03:51.217318058
INFO 2020-11-12 15:21:49,558Z lrauvNc4ToNetcdf.py nudge_coords():724    9:        0.348    0.0017565    0.0003032       908      6.55          -4.96           8.57 2018-08-24 18:10:24.832325935
INFO 2020-11-12 15:21:49,563Z lrauvNc4ToNetcdf.py nudge_coords():724   10:        0.338   -0.0015567   -0.0015330       902      6.52          25.25         -43.56 2018-08-24 18:16:56.518539906
INFO 2020-11-12 15:21:49,567Z lrauvNc4ToNetcdf.py nudge_coords():724   11:        0.345   -0.0000043    0.0001113       968      7.34          -1.63           2.81 2018-08-24 18:24:17.203449011
INFO 2020-11-12 15:21:49,572Z lrauvNc4ToNetcdf.py nudge_coords():724   12:        0.369    0.0003240    0.0003100       298      2.63         -12.68          21.88 2018-08-24 18:26:55.192387104
INFO 2020-11-12 15:21:49,576Z lrauvNc4ToNetcdf.py nudge_coords():724   13:        0.756    0.0000158    0.0007040      1351     10.01          -7.54          13.03 2018-08-24 18:36:56.475080967
INFO 2020-11-12 15:21:49,581Z lrauvNc4ToNetcdf.py nudge_coords():724   14:        0.351   -0.0000053    0.0000075        40      0.27          -2.97           5.14 2018-08-24 18:37:13.621299982
INFO 2020-11-12 15:21:49,585Z lrauvNc4ToNetcdf.py nudge_coords():724   15:        0.108    0.0003195    0.0003220       227      3.18         -10.84          18.75 2018-08-24 18:40:24.979192019
INFO 2020-11-12 15:21:49,590Z lrauvNc4ToNetcdf.py nudge_coords():724   16:        0.347   -0.0005645   -0.0004477       337      3.35          14.35         -24.79 2018-08-24 18:43:46.039627075
INFO 2020-11-12 15:21:49,594Z lrauvNc4ToNetcdf.py nudge_coords():724   17:        0.326   -0.0000593   -0.0000241        13      0.08          32.88         -56.81 2018-08-24 18:43:51.286142111
INFO 2020-11-12 15:21:49,599Z lrauvNc4ToNetcdf.py nudge_coords():724   18:        0.341   -0.0000302   -0.0000070        30      0.52           1.45          -2.50 2018-08-24 18:44:22.839888096
INFO 2020-11-12 15:21:49,603Z lrauvNc4ToNetcdf.py nudge_coords():724   19:        0.339    0.0008566    0.0005241      3146     21.01          -2.68           4.62 2018-08-24 19:05:23.790658951
INFO 2020-11-12 15:21:49,608Z lrauvNc4ToNetcdf.py nudge_coords():724   20:        0.292    0.0002077    0.0004098      1007      7.39          -5.95          10.28 2018-08-24 19:12:47.476125956
INFO 2020-11-12 15:21:49,613Z lrauvNc4ToNetcdf.py nudge_coords():724   21:        0.324    0.0001553    0.0005427      1041      7.69          -7.56          13.07 2018-08-24 19:20:29.351924896
INFO 2020-11-12 15:21:49,617Z lrauvNc4ToNetcdf.py nudge_coords():724   22:        0.346   -0.0000913   -0.0000227      1163      8.49           0.29          -0.49 2018-08-24 19:28:59.398350954
INFO 2020-11-12 15:21:49,622Z lrauvNc4ToNetcdf.py nudge_coords():754   24:            -            -            -       641      4.99              -              -
INFO 2020-11-12 15:21:49,622Z lrauvNc4ToNetcdf.py nudge_coords():758 Points in final series = 30930
INFO 2020-11-12 15:21:49,654Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():550 http://odss.mbari.org/trackingdb/position/makai_ac/between/20180824T144903/20180824T203359/data.csv
INFO 2020-11-12 15:21:49,702Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():573 Found 0 position values from the Tracking database
INFO 2020-11-12 15:21:49,706Z lrauvNc4ToNetcdf.py processResampleNc4File():1190 ['oxygen', 'salinity', 'temperature', 'PAR', 'chlorophyll', 'chl', 'bbp470', 'bbp650', 'health_platform_battery_charge', 'health_platform_average_voltage', 'fix_time', 'fix_latitude', 'fix_longitude', 'control_inputs_buoyancy_position', 'control_inputs_elevator_angle', 'control_inputs_mass_position', 'control_inputs_rudder_angle', 'control_inputs_propeller_rotation_rate', 'fix_residual_percent_distance_traveled_DeadReckonUsingSpeedCalculator', 'pose_longitude_DeadReckonUsingSpeedCalculator', 'pose_latitude_DeadReckonUsingSpeedCalculator', 'pose_depth_DeadReckonUsingSpeedCalculator', 'pitch', 'roll', 'yaw', 'latitude', 'longitude', 'depth', 'time']
INFO 2020-11-12 15:21:50,170Z lrauvNc4ToNetcdf.py processResampleNc4File():1193 Wrote /mbari/LRAUV/makai/missionlogs/2018/20180823_20180827/20180824T154853/201808241549_201808241933_2S_scieng.nc