INFO 2020-11-12 15:20:59,651Z lrauvNc4ToNetcdf.py processResampleNc4File():1043 Reading /mbari/LRAUV/makai/missionlogs/2018/20180823_20180827/20180824T152750/201808241528_201808241548.nc4 file...
INFO 2020-11-12 15:20:59,651Z lrauvNc4ToNetcdf.py processResampleNc4File():1044 After copying to /tmp/201808241528_201808241548.nc4
INFO 2020-11-12 15:21:05,463Z lrauvNc4ToNetcdf.py processResampleNc4File():1046 Read file /mbari/LRAUV/makai/missionlogs/2018/20180823_20180827/20180824T152750/201808241528_201808241548.nc4
INFO 2020-11-12 15:21:05,488Z lrauvNc4ToNetcdf.py createSeries():241 latitude :  110 v_t values found before 2018-08-24 15:28:00 and after 2018-08-24 15:48:00
INFO 2020-11-12 15:21:05,571Z lrauvNc4ToNetcdf.py createSeries():241 longitude:  110 v_t values found before 2018-08-24 15:28:00 and after 2018-08-24 15:48:00
INFO 2020-11-12 15:21:05,653Z lrauvNc4ToNetcdf.py createSeries():241 depth    :  110 v_t values found before 2018-08-24 15:28:00 and after 2018-08-24 15:48:00
INFO 2020-11-12 15:21:05,740Z lrauvNc4ToNetcdf.py createSeries():241 time     :  110 v_t values found before 2018-08-24 15:28:00 and after 2018-08-24 15:48:00
INFO 2020-11-12 15:21:05,827Z lrauvNc4ToNetcdf.py createSeries():241 latitude :  110 v_t values found before 2018-08-24 15:28:00 and after 2018-08-24 15:48:00
INFO 2020-11-12 15:21:05,907Z lrauvNc4ToNetcdf.py createSeries():241 longitude:  110 v_t values found before 2018-08-24 15:28:00 and after 2018-08-24 15:48:00
INFO 2020-11-12 15:21:06,009Z lrauvNc4ToNetcdf.py createSeries():241 depth    :  110 v_t values found before 2018-08-24 15:28:00 and after 2018-08-24 15:48:00
INFO 2020-11-12 15:21:06,100Z lrauvNc4ToNetcdf.py createSeries():241 time     :  110 v_t values found before 2018-08-24 15:28:00 and after 2018-08-24 15:48:00
INFO 2020-11-12 15:21:06,187Z lrauvNc4ToNetcdf.py createSeries():241 latitude :  110 v_t values found before 2018-08-24 15:28:00 and after 2018-08-24 15:48:00
INFO 2020-11-12 15:21:06,267Z lrauvNc4ToNetcdf.py createSeries():241 longitude:  110 v_t values found before 2018-08-24 15:28:00 and after 2018-08-24 15:48:00
INFO 2020-11-12 15:21:06,348Z lrauvNc4ToNetcdf.py createSeries():241 depth    :  110 v_t values found before 2018-08-24 15:28:00 and after 2018-08-24 15:48:00
INFO 2020-11-12 15:21:06,434Z lrauvNc4ToNetcdf.py createSeries():241 time     :  110 v_t values found before 2018-08-24 15:28:00 and after 2018-08-24 15:48:00
INFO 2020-11-12 15:21:06,521Z lrauvNc4ToNetcdf.py createSeries():241 latitude :  110 v_t values found before 2018-08-24 15:28:00 and after 2018-08-24 15:48:00
INFO 2020-11-12 15:21:06,602Z lrauvNc4ToNetcdf.py createSeries():241 longitude:  110 v_t values found before 2018-08-24 15:28:00 and after 2018-08-24 15:48:00
INFO 2020-11-12 15:21:06,682Z lrauvNc4ToNetcdf.py createSeries():241 depth    :  110 v_t values found before 2018-08-24 15:28:00 and after 2018-08-24 15:48:00
INFO 2020-11-12 15:21:06,768Z lrauvNc4ToNetcdf.py createSeries():241 time     :  110 v_t values found before 2018-08-24 15:28:00 and after 2018-08-24 15:48:00
INFO 2020-11-12 15:21:06,839Z lrauvNc4ToNetcdf.py processResampleNc4File():1059 Creating t variable of the time indexes
INFO 2020-11-12 15:21:06,848Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group Aanderaa_O2 parameter mass_concentration_of_oxygen_in_sea_water renaming to oxygen
INFO 2020-11-12 15:21:06,850Z lrauvNc4ToNetcdf.py processResampleNc4File():1097 Variable sea_water_salinity empty so skipping
INFO 2020-11-12 15:21:06,852Z lrauvNc4ToNetcdf.py processResampleNc4File():1097 Variable sea_water_temperature empty so skipping
INFO 2020-11-12 15:21:06,854Z lrauvNc4ToNetcdf.py processResampleNc4File():1097 Variable bin_median_sea_water_salinity empty so skipping
INFO 2020-11-12 15:21:06,856Z lrauvNc4ToNetcdf.py processResampleNc4File():1097 Variable bin_median_sea_water_temperature empty so skipping
INFO 2020-11-12 15:21:06,858Z lrauvNc4ToNetcdf.py createSeries():241 downwelling_photosynthetic_photon_flux_in_sea_water:  110 v_t values found before 2018-08-24 15:28:00 and after 2018-08-24 15:48:00
INFO 2020-11-12 15:21:06,897Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group PAR_Licor parameter downwelling_photosynthetic_photon_flux_in_sea_water renaming to PAR
INFO 2020-11-12 15:21:06,902Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group WetLabsBB2FL parameter mass_concentration_of_chlorophyll_in_sea_water renaming to chlorophyll
INFO 2020-11-12 15:21:06,907Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group WetLabsBB2FL parameter OutputChl renaming to chl
INFO 2020-11-12 15:21:06,912Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group WetLabsBB2FL parameter Output470 renaming to bbp470
INFO 2020-11-12 15:21:06,917Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group WetLabsBB2FL parameter Output650 renaming to bbp650
INFO 2020-11-12 15:21:06,919Z lrauvNc4ToNetcdf.py processResampleNc4File():1097 Variable bin_mean_mass_concentration_of_chlorophyll_in_sea_water empty so skipping
INFO 2020-11-12 15:21:06,921Z lrauvNc4ToNetcdf.py processResampleNc4File():1097 Variable bin_median_mass_concentration_of_chlorophyll_in_sea_water empty so skipping
INFO 2020-11-12 15:21:06,928Z lrauvNc4ToNetcdf.py processResampleNc4File():1097 Variable platform_battery_charge empty so skipping
INFO 2020-11-12 15:21:06,934Z lrauvNc4ToNetcdf.py processResampleNc4File():1097 Variable platform_battery_voltage empty so skipping
INFO 2020-11-12 15:21:06,940Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group NAL9602 parameter time_fix renaming to fix_time
INFO 2020-11-12 15:21:06,949Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group NAL9602 parameter latitude_fix renaming to fix_latitude
INFO 2020-11-12 15:21:06,958Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group NAL9602 parameter longitude_fix renaming to fix_longitude
INFO 2020-11-12 15:21:06,965Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group BuoyancyServo parameter platform_buoyancy_position renaming to control_inputs_buoyancy_position
INFO 2020-11-12 15:21:06,971Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group ElevatorServo parameter platform_elevator_angle renaming to control_inputs_elevator_angle
INFO 2020-11-12 15:21:06,977Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group MassServo parameter platform_mass_position renaming to control_inputs_mass_position
INFO 2020-11-12 15:21:06,983Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group RudderServo parameter platform_rudder_angle renaming to control_inputs_rudder_angle
INFO 2020-11-12 15:21:06,988Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group ThrusterServo parameter platform_propeller_rotation_rate renaming to control_inputs_propeller_rotation_rate
INFO 2020-11-12 15:21:06,990Z lrauvNc4ToNetcdf.py processResampleNc4File():1097 Variable fix_residual_percent_distance_traveled empty so skipping
INFO 2020-11-12 15:21:06,992Z lrauvNc4ToNetcdf.py createSeries():241 longitude:  110 v_t values found before 2018-08-24 15:28:00 and after 2018-08-24 15:48:00
INFO 2020-11-12 15:21:07,025Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group DeadReckonUsingSpeedCalculator parameter longitude renaming to pose_longitude_DeadReckonUsingSpeedCalculator
INFO 2020-11-12 15:21:07,026Z lrauvNc4ToNetcdf.py createSeries():241 latitude :  110 v_t values found before 2018-08-24 15:28:00 and after 2018-08-24 15:48:00
INFO 2020-11-12 15:21:07,060Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group DeadReckonUsingSpeedCalculator parameter latitude renaming to pose_latitude_DeadReckonUsingSpeedCalculator
INFO 2020-11-12 15:21:07,062Z lrauvNc4ToNetcdf.py createSeries():241 depth    :  110 v_t values found before 2018-08-24 15:28:00 and after 2018-08-24 15:48:00
INFO 2020-11-12 15:21:07,096Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group DeadReckonUsingSpeedCalculator parameter depth renaming to pose_depth_DeadReckonUsingSpeedCalculator
INFO 2020-11-12 15:21:07,120Z lrauvNc4ToNetcdf.py createSeries():241 platform_pitch_angle:  109 v_t values found before 2018-08-24 15:28:00 and after 2018-08-24 15:48:00
INFO 2020-11-12 15:21:07,193Z lrauvNc4ToNetcdf.py createNav():506 platform_pitch_angle -> pitch: {'units': 'n/a', 'standard_name': 'platform_pitch_angle', 'coordinates': 'time depth latitude longitude'}
INFO 2020-11-12 15:21:07,215Z lrauvNc4ToNetcdf.py createSeries():241 platform_roll_angle:  109 v_t values found before 2018-08-24 15:28:00 and after 2018-08-24 15:48:00
INFO 2020-11-12 15:21:07,287Z lrauvNc4ToNetcdf.py createNav():506 platform_roll_angle -> roll: {'units': 'rad', 'standard_name': 'platform_roll_angle', 'coordinates': 'time depth latitude longitude'}
INFO 2020-11-12 15:21:07,307Z lrauvNc4ToNetcdf.py createSeries():241 platform_orientation:  109 v_t values found before 2018-08-24 15:28:00 and after 2018-08-24 15:48:00
INFO 2020-11-12 15:21:07,380Z lrauvNc4ToNetcdf.py createNav():506 platform_orientation -> yaw: {'units': 'n/a', 'standard_name': 'platform_yaw_angle', 'coordinates': 'time depth latitude longitude'}
INFO 2020-11-12 15:21:07,380Z lrauvNc4ToNetcdf.py nudge_coords():651 /mbari/LRAUV/makai/missionlogs/2018/20180823_20180827/20180824T152750/201808241528_201808241548.nc4
INFO 2020-11-12 15:21:07,615Z lrauvNc4ToNetcdf.py nudge_coords():674 seg#  end_sec_diff end_lon_diff end_lat_diff len(segi)   seg_min u_drift (cm/s) v_drift (cm/s)     start datetime of segment
INFO 2020-11-12 15:21:07,616Z lrauvNc4ToNetcdf.py nudge_coords():691                  -            -            -         0      0.00              -              -                             -
INFO 2020-11-12 15:21:07,618Z lrauvNc4ToNetcdf.py nudge_coords():724    0:        0.334    0.0000132   -0.0000123         7      0.04          31.72         -57.25 2018-08-24 15:31:37.033947945
INFO 2020-11-12 15:21:07,622Z lrauvNc4ToNetcdf.py nudge_coords():754    2:            -            -            -      2237     17.25              -              -
INFO 2020-11-12 15:21:07,622Z lrauvNc4ToNetcdf.py nudge_coords():758 Points in final series = 2244
INFO 2020-11-12 15:21:07,642Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():550 http://odss.mbari.org/trackingdb/position/makai_ac/between/20180824T142802/20180824T164852/data.csv
INFO 2020-11-12 15:21:07,680Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():573 Found 0 position values from the Tracking database
INFO 2020-11-12 15:21:07,682Z lrauvNc4ToNetcdf.py processResampleNc4File():1190 ['oxygen', 'PAR', 'chlorophyll', 'chl', 'bbp470', 'bbp650', 'fix_time', 'fix_latitude', 'fix_longitude', 'control_inputs_buoyancy_position', 'control_inputs_elevator_angle', 'control_inputs_mass_position', 'control_inputs_rudder_angle', 'control_inputs_propeller_rotation_rate', 'pose_longitude_DeadReckonUsingSpeedCalculator', 'pose_latitude_DeadReckonUsingSpeedCalculator', 'pose_depth_DeadReckonUsingSpeedCalculator', 'pitch', 'roll', 'yaw', 'latitude', 'longitude', 'depth', 'time']
INFO 2020-11-12 15:21:07,943Z lrauvNc4ToNetcdf.py processResampleNc4File():1193 Wrote /mbari/LRAUV/makai/missionlogs/2018/20180823_20180827/20180824T152750/201808241528_201808241548_2S_scieng.nc