INFO 2020-11-12 15:20:48,356Z lrauvNc4ToNetcdf.py processResampleNc4File():1043 Reading /mbari/LRAUV/makai/missionlogs/2018/20180823_20180827/20180824T134849/201808241349_201808241522.nc4 file...
INFO 2020-11-12 15:20:48,356Z lrauvNc4ToNetcdf.py processResampleNc4File():1044 After copying to /tmp/201808241349_201808241522.nc4
INFO 2020-11-12 15:20:49,382Z lrauvNc4ToNetcdf.py processResampleNc4File():1046 Read file /mbari/LRAUV/makai/missionlogs/2018/20180823_20180827/20180824T134849/201808241349_201808241522.nc4
INFO 2020-11-12 15:20:49,408Z lrauvNc4ToNetcdf.py createSeries():241 latitude :    1 v_t values found before 2018-08-24 13:49:00 and after 2018-08-24 15:22:00
INFO 2020-11-12 15:20:49,630Z lrauvNc4ToNetcdf.py createSeries():241 longitude:    1 v_t values found before 2018-08-24 13:49:00 and after 2018-08-24 15:22:00
INFO 2020-11-12 15:20:50,406Z lrauvNc4ToNetcdf.py createSeries():241 latitude :    1 v_t values found before 2018-08-24 13:49:00 and after 2018-08-24 15:22:00
INFO 2020-11-12 15:20:50,628Z lrauvNc4ToNetcdf.py createSeries():241 longitude:    1 v_t values found before 2018-08-24 13:49:00 and after 2018-08-24 15:22:00
INFO 2020-11-12 15:20:51,401Z lrauvNc4ToNetcdf.py createSeries():241 latitude :    1 v_t values found before 2018-08-24 13:49:00 and after 2018-08-24 15:22:00
INFO 2020-11-12 15:20:51,618Z lrauvNc4ToNetcdf.py createSeries():241 longitude:    1 v_t values found before 2018-08-24 13:49:00 and after 2018-08-24 15:22:00
INFO 2020-11-12 15:20:52,389Z lrauvNc4ToNetcdf.py createSeries():241 latitude :    1 v_t values found before 2018-08-24 13:49:00 and after 2018-08-24 15:22:00
INFO 2020-11-12 15:20:52,606Z lrauvNc4ToNetcdf.py createSeries():241 longitude:    1 v_t values found before 2018-08-24 13:49:00 and after 2018-08-24 15:22:00
INFO 2020-11-12 15:20:53,360Z lrauvNc4ToNetcdf.py processResampleNc4File():1059 Creating t variable of the time indexes
INFO 2020-11-12 15:20:53,445Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group Aanderaa_O2 parameter mass_concentration_of_oxygen_in_sea_water renaming to oxygen
INFO 2020-11-12 15:20:53,446Z lrauvNc4ToNetcdf.py createSeries():241 sea_water_salinity:   18 v_t values found before 2018-08-24 13:49:00 and after 2018-08-24 15:22:00
INFO 2020-11-12 15:20:53,502Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group CTD_Seabird parameter sea_water_salinity renaming to salinity
INFO 2020-11-12 15:20:53,503Z lrauvNc4ToNetcdf.py createSeries():241 sea_water_temperature:   18 v_t values found before 2018-08-24 13:49:00 and after 2018-08-24 15:22:00
INFO 2020-11-12 15:20:53,558Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group CTD_Seabird parameter sea_water_temperature renaming to temperature
INFO 2020-11-12 15:20:53,561Z lrauvNc4ToNetcdf.py processResampleNc4File():1097 Variable bin_median_sea_water_salinity empty so skipping
INFO 2020-11-12 15:20:53,563Z lrauvNc4ToNetcdf.py processResampleNc4File():1097 Variable bin_median_sea_water_temperature empty so skipping
INFO 2020-11-12 15:20:53,813Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group PAR_Licor parameter downwelling_photosynthetic_photon_flux_in_sea_water renaming to PAR
INFO 2020-11-12 15:20:53,815Z lrauvNc4ToNetcdf.py createSeries():241 mass_concentration_of_chlorophyll_in_sea_water:   36 v_t values found before 2018-08-24 13:49:00 and after 2018-08-24 15:22:00
INFO 2020-11-12 15:20:53,918Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group WetLabsBB2FL parameter mass_concentration_of_chlorophyll_in_sea_water renaming to chlorophyll
INFO 2020-11-12 15:20:53,920Z lrauvNc4ToNetcdf.py createSeries():241 OutputChl:   36 v_t values found before 2018-08-24 13:49:00 and after 2018-08-24 15:22:00
INFO 2020-11-12 15:20:54,023Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group WetLabsBB2FL parameter OutputChl renaming to chl
INFO 2020-11-12 15:20:54,025Z lrauvNc4ToNetcdf.py createSeries():241 Output470:   36 v_t values found before 2018-08-24 13:49:00 and after 2018-08-24 15:22:00
INFO 2020-11-12 15:20:54,127Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group WetLabsBB2FL parameter Output470 renaming to bbp470
INFO 2020-11-12 15:20:54,129Z lrauvNc4ToNetcdf.py createSeries():241 Output650:   36 v_t values found before 2018-08-24 13:49:00 and after 2018-08-24 15:22:00
INFO 2020-11-12 15:20:54,233Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group WetLabsBB2FL parameter Output650 renaming to bbp650
INFO 2020-11-12 15:20:54,235Z lrauvNc4ToNetcdf.py createSeries():241 bin_mean_mass_concentration_of_chlorophyll_in_sea_water:    4 v_t values found before 2018-08-24 13:49:00 and after 2018-08-24 15:22:00
INFO 2020-11-12 15:20:54,250Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group WetLabsBB2FL parameter bin_mean_mass_concentration_of_chlorophyll_in_sea_water renaming to chlorophyll
INFO 2020-11-12 15:20:54,251Z lrauvNc4ToNetcdf.py createSeries():241 bin_median_mass_concentration_of_chlorophyll_in_sea_water:    4 v_t values found before 2018-08-24 13:49:00 and after 2018-08-24 15:22:00
INFO 2020-11-12 15:20:54,266Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group WetLabsBB2FL parameter bin_median_mass_concentration_of_chlorophyll_in_sea_water renaming to chlorophyll
INFO 2020-11-12 15:20:54,279Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group BPC1 parameter platform_battery_charge renaming to health_platform_battery_charge
INFO 2020-11-12 15:20:54,291Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group BPC1 parameter platform_battery_voltage renaming to health_platform_average_voltage
INFO 2020-11-12 15:20:54,297Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group NAL9602 parameter time_fix renaming to fix_time
INFO 2020-11-12 15:20:54,302Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group NAL9602 parameter latitude_fix renaming to fix_latitude
INFO 2020-11-12 15:20:54,307Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group NAL9602 parameter longitude_fix renaming to fix_longitude
INFO 2020-11-12 15:20:54,315Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group BuoyancyServo parameter platform_buoyancy_position renaming to control_inputs_buoyancy_position
INFO 2020-11-12 15:20:54,342Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group ElevatorServo parameter platform_elevator_angle renaming to control_inputs_elevator_angle
INFO 2020-11-12 15:20:54,349Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group MassServo parameter platform_mass_position renaming to control_inputs_mass_position
INFO 2020-11-12 15:20:54,430Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group RudderServo parameter platform_rudder_angle renaming to control_inputs_rudder_angle
INFO 2020-11-12 15:20:54,602Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group ThrusterServo parameter platform_propeller_rotation_rate renaming to control_inputs_propeller_rotation_rate
INFO 2020-11-12 15:20:54,607Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group DeadReckonUsingSpeedCalculator parameter fix_residual_percent_distance_traveled renaming to fix_residual_percent_distance_traveled_DeadReckonUsingSpeedCalculator
INFO 2020-11-12 15:20:54,609Z lrauvNc4ToNetcdf.py createSeries():241 longitude:    1 v_t values found before 2018-08-24 13:49:00 and after 2018-08-24 15:22:00
INFO 2020-11-12 15:20:54,771Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group DeadReckonUsingSpeedCalculator parameter longitude renaming to pose_longitude_DeadReckonUsingSpeedCalculator
INFO 2020-11-12 15:20:54,773Z lrauvNc4ToNetcdf.py createSeries():241 latitude :    1 v_t values found before 2018-08-24 13:49:00 and after 2018-08-24 15:22:00
INFO 2020-11-12 15:20:54,935Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group DeadReckonUsingSpeedCalculator parameter latitude renaming to pose_latitude_DeadReckonUsingSpeedCalculator
INFO 2020-11-12 15:20:54,937Z lrauvNc4ToNetcdf.py createSeries():241 depth    :    1 v_t values found before 2018-08-24 13:49:00 and after 2018-08-24 15:22:00
INFO 2020-11-12 15:20:55,101Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group DeadReckonUsingSpeedCalculator parameter depth renaming to pose_depth_DeadReckonUsingSpeedCalculator
INFO 2020-11-12 15:20:55,387Z lrauvNc4ToNetcdf.py createNav():506 platform_pitch_angle -> pitch: {'units': 'n/a', 'standard_name': 'platform_pitch_angle', 'coordinates': 'time depth latitude longitude'}
INFO 2020-11-12 15:20:55,666Z lrauvNc4ToNetcdf.py createNav():506 platform_roll_angle -> roll: {'units': 'rad', 'standard_name': 'platform_roll_angle', 'coordinates': 'time depth latitude longitude'}
INFO 2020-11-12 15:20:55,944Z lrauvNc4ToNetcdf.py createNav():506 platform_orientation -> yaw: {'units': 'n/a', 'standard_name': 'platform_yaw_angle', 'coordinates': 'time depth latitude longitude'}
INFO 2020-11-12 15:20:55,945Z lrauvNc4ToNetcdf.py nudge_coords():651 /mbari/LRAUV/makai/missionlogs/2018/20180823_20180827/20180824T134849/201808241349_201808241522.nc4
INFO 2020-11-12 15:20:55,971Z lrauvNc4ToNetcdf.py var_series():601 Removing bad longitude times from /mbari/LRAUV/makai/missionlogs/2018/20180823_20180827/20180824T134849/201808241349_201808241522.nc4 ([index], [values]): [2810], ['2684-10-29 00:12:44.715767']
INFO 2020-11-12 15:20:56,187Z lrauvNc4ToNetcdf.py var_series():601 Removing bad latitude times from /mbari/LRAUV/makai/missionlogs/2018/20180823_20180827/20180824T134849/201808241349_201808241522.nc4 ([index], [values]): [2810], ['2684-10-29 00:12:44.715767']
INFO 2020-11-12 15:20:56,483Z lrauvNc4ToNetcdf.py nudge_coords():674 seg#  end_sec_diff end_lon_diff end_lat_diff len(segi)   seg_min u_drift (cm/s) v_drift (cm/s)     start datetime of segment
INFO 2020-11-12 15:20:56,484Z lrauvNc4ToNetcdf.py nudge_coords():691                  -            -            -         0      0.00              -              -                             -
INFO 2020-11-12 15:20:56,486Z lrauvNc4ToNetcdf.py nudge_coords():724    0:        0.349    0.0000810    0.0000727       171      1.26          -5.70          10.69 2018-08-24 13:52:10.843647957
INFO 2020-11-12 15:20:56,490Z lrauvNc4ToNetcdf.py nudge_coords():724    1:        0.343    0.0002047    0.0000457      1801     13.98          -0.32           0.61 2018-08-24 14:06:10.118396997
INFO 2020-11-12 15:20:56,495Z lrauvNc4ToNetcdf.py nudge_coords():724    2:        0.258    0.0005207    0.0000983      1171      8.78          -1.11           2.08 2018-08-24 14:14:57.366547108
INFO 2020-11-12 15:20:56,499Z lrauvNc4ToNetcdf.py nudge_coords():724    3:        0.295   -0.0000342   -0.0000022        40      0.54           0.39          -0.74 2018-08-24 14:15:30.241312981
INFO 2020-11-12 15:20:56,503Z lrauvNc4ToNetcdf.py nudge_coords():724    4:        0.407   -0.0033438    0.0058619      9332     62.32          -9.66          17.43 2018-08-24 15:17:49.728669882
INFO 2020-11-12 15:20:56,508Z lrauvNc4ToNetcdf.py nudge_coords():754    6:            -            -            -       475      3.59              -              -
INFO 2020-11-12 15:20:56,508Z lrauvNc4ToNetcdf.py nudge_coords():758 Points in final series = 12990
INFO 2020-11-12 15:20:56,532Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():550 http://odss.mbari.org/trackingdb/position/makai_ac/between/20180824T124901/20180824T162125/data.csv
INFO 2020-11-12 15:20:56,567Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():573 Found 0 position values from the Tracking database
INFO 2020-11-12 15:20:56,570Z lrauvNc4ToNetcdf.py processResampleNc4File():1190 ['oxygen', 'salinity', 'temperature', 'PAR', 'chlorophyll', 'chl', 'bbp470', 'bbp650', 'health_platform_battery_charge', 'health_platform_average_voltage', 'fix_time', 'fix_latitude', 'fix_longitude', 'control_inputs_buoyancy_position', 'control_inputs_elevator_angle', 'control_inputs_mass_position', 'control_inputs_rudder_angle', 'control_inputs_propeller_rotation_rate', 'fix_residual_percent_distance_traveled_DeadReckonUsingSpeedCalculator', 'pose_longitude_DeadReckonUsingSpeedCalculator', 'pose_latitude_DeadReckonUsingSpeedCalculator', 'pose_depth_DeadReckonUsingSpeedCalculator', 'pitch', 'roll', 'yaw', 'latitude', 'longitude', 'depth', 'time']
INFO 2020-11-12 15:20:57,272Z lrauvNc4ToNetcdf.py processResampleNc4File():1193 Wrote /mbari/LRAUV/makai/missionlogs/2018/20180823_20180827/20180824T134849/201808241349_201808241522_2S_scieng.nc