INFO 2020-11-12 15:20:18,021Z lrauvNc4ToNetcdf.py processResampleNc4File():1043 Reading /mbari/LRAUV/makai/missionlogs/2018/20180823_20180827/20180824T070253/201808240703_201808240714.nc4 file...
INFO 2020-11-12 15:20:18,022Z lrauvNc4ToNetcdf.py processResampleNc4File():1044 After copying to /tmp/201808240703_201808240714.nc4
INFO 2020-11-12 15:20:19,019Z lrauvNc4ToNetcdf.py processResampleNc4File():1046 Read file /mbari/LRAUV/makai/missionlogs/2018/20180823_20180827/20180824T070253/201808240703_201808240714.nc4
INFO 2020-11-12 15:20:19,043Z lrauvNc4ToNetcdf.py createSeries():241 latitude :  117 v_t values found before 2018-08-24 07:03:00 and after 2018-08-24 07:14:00
INFO 2020-11-12 15:20:19,113Z lrauvNc4ToNetcdf.py createSeries():241 longitude:  117 v_t values found before 2018-08-24 07:03:00 and after 2018-08-24 07:14:00
INFO 2020-11-12 15:20:19,182Z lrauvNc4ToNetcdf.py createSeries():241 depth    :  117 v_t values found before 2018-08-24 07:03:00 and after 2018-08-24 07:14:00
INFO 2020-11-12 15:20:19,259Z lrauvNc4ToNetcdf.py createSeries():241 time     :  117 v_t values found before 2018-08-24 07:03:00 and after 2018-08-24 07:14:00
INFO 2020-11-12 15:20:19,335Z lrauvNc4ToNetcdf.py createSeries():241 latitude :  117 v_t values found before 2018-08-24 07:03:00 and after 2018-08-24 07:14:00
INFO 2020-11-12 15:20:19,416Z lrauvNc4ToNetcdf.py createSeries():241 longitude:  117 v_t values found before 2018-08-24 07:03:00 and after 2018-08-24 07:14:00
INFO 2020-11-12 15:20:19,486Z lrauvNc4ToNetcdf.py createSeries():241 depth    :  117 v_t values found before 2018-08-24 07:03:00 and after 2018-08-24 07:14:00
INFO 2020-11-12 15:20:19,562Z lrauvNc4ToNetcdf.py createSeries():241 time     :  117 v_t values found before 2018-08-24 07:03:00 and after 2018-08-24 07:14:00
INFO 2020-11-12 15:20:19,639Z lrauvNc4ToNetcdf.py createSeries():241 latitude :  117 v_t values found before 2018-08-24 07:03:00 and after 2018-08-24 07:14:00
INFO 2020-11-12 15:20:19,711Z lrauvNc4ToNetcdf.py createSeries():241 longitude:  117 v_t values found before 2018-08-24 07:03:00 and after 2018-08-24 07:14:00
INFO 2020-11-12 15:20:19,779Z lrauvNc4ToNetcdf.py createSeries():241 depth    :  117 v_t values found before 2018-08-24 07:03:00 and after 2018-08-24 07:14:00
INFO 2020-11-12 15:20:19,856Z lrauvNc4ToNetcdf.py createSeries():241 time     :  117 v_t values found before 2018-08-24 07:03:00 and after 2018-08-24 07:14:00
INFO 2020-11-12 15:20:19,932Z lrauvNc4ToNetcdf.py createSeries():241 latitude :  117 v_t values found before 2018-08-24 07:03:00 and after 2018-08-24 07:14:00
INFO 2020-11-12 15:20:19,999Z lrauvNc4ToNetcdf.py createSeries():241 longitude:  117 v_t values found before 2018-08-24 07:03:00 and after 2018-08-24 07:14:00
INFO 2020-11-12 15:20:20,067Z lrauvNc4ToNetcdf.py createSeries():241 depth    :  117 v_t values found before 2018-08-24 07:03:00 and after 2018-08-24 07:14:00
INFO 2020-11-12 15:20:20,143Z lrauvNc4ToNetcdf.py createSeries():241 time     :  117 v_t values found before 2018-08-24 07:03:00 and after 2018-08-24 07:14:00
INFO 2020-11-12 15:20:20,201Z lrauvNc4ToNetcdf.py processResampleNc4File():1059 Creating t variable of the time indexes
INFO 2020-11-12 15:20:20,210Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group Aanderaa_O2 parameter mass_concentration_of_oxygen_in_sea_water renaming to oxygen
INFO 2020-11-12 15:20:20,212Z lrauvNc4ToNetcdf.py processResampleNc4File():1097 Variable sea_water_salinity empty so skipping
INFO 2020-11-12 15:20:20,214Z lrauvNc4ToNetcdf.py processResampleNc4File():1097 Variable sea_water_temperature empty so skipping
INFO 2020-11-12 15:20:20,216Z lrauvNc4ToNetcdf.py processResampleNc4File():1097 Variable bin_median_sea_water_salinity empty so skipping
INFO 2020-11-12 15:20:20,218Z lrauvNc4ToNetcdf.py processResampleNc4File():1097 Variable bin_median_sea_water_temperature empty so skipping
INFO 2020-11-12 15:20:20,220Z lrauvNc4ToNetcdf.py createSeries():241 downwelling_photosynthetic_photon_flux_in_sea_water:  117 v_t values found before 2018-08-24 07:03:00 and after 2018-08-24 07:14:00
INFO 2020-11-12 15:20:20,249Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group PAR_Licor parameter downwelling_photosynthetic_photon_flux_in_sea_water renaming to PAR
INFO 2020-11-12 15:20:20,255Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group WetLabsBB2FL parameter mass_concentration_of_chlorophyll_in_sea_water renaming to chlorophyll
INFO 2020-11-12 15:20:20,260Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group WetLabsBB2FL parameter OutputChl renaming to chl
INFO 2020-11-12 15:20:20,265Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group WetLabsBB2FL parameter Output470 renaming to bbp470
INFO 2020-11-12 15:20:20,270Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group WetLabsBB2FL parameter Output650 renaming to bbp650
INFO 2020-11-12 15:20:20,272Z lrauvNc4ToNetcdf.py processResampleNc4File():1097 Variable bin_mean_mass_concentration_of_chlorophyll_in_sea_water empty so skipping
INFO 2020-11-12 15:20:20,275Z lrauvNc4ToNetcdf.py processResampleNc4File():1097 Variable bin_median_mass_concentration_of_chlorophyll_in_sea_water empty so skipping
INFO 2020-11-12 15:20:20,282Z lrauvNc4ToNetcdf.py processResampleNc4File():1097 Variable platform_battery_charge empty so skipping
INFO 2020-11-12 15:20:20,287Z lrauvNc4ToNetcdf.py processResampleNc4File():1097 Variable platform_battery_voltage empty so skipping
INFO 2020-11-12 15:20:20,293Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group NAL9602 parameter time_fix renaming to fix_time
INFO 2020-11-12 15:20:20,297Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group NAL9602 parameter latitude_fix renaming to fix_latitude
INFO 2020-11-12 15:20:20,302Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group NAL9602 parameter longitude_fix renaming to fix_longitude
INFO 2020-11-12 15:20:20,315Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group BuoyancyServo parameter platform_buoyancy_position renaming to control_inputs_buoyancy_position
INFO 2020-11-12 15:20:20,323Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group ElevatorServo parameter platform_elevator_angle renaming to control_inputs_elevator_angle
INFO 2020-11-12 15:20:20,330Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group MassServo parameter platform_mass_position renaming to control_inputs_mass_position
INFO 2020-11-12 15:20:20,336Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group RudderServo parameter platform_rudder_angle renaming to control_inputs_rudder_angle
INFO 2020-11-12 15:20:20,344Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group ThrusterServo parameter platform_propeller_rotation_rate renaming to control_inputs_propeller_rotation_rate
INFO 2020-11-12 15:20:20,346Z lrauvNc4ToNetcdf.py processResampleNc4File():1097 Variable fix_residual_percent_distance_traveled empty so skipping
INFO 2020-11-12 15:20:20,348Z lrauvNc4ToNetcdf.py createSeries():241 longitude:  117 v_t values found before 2018-08-24 07:03:00 and after 2018-08-24 07:14:00
INFO 2020-11-12 15:20:20,364Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group DeadReckonUsingSpeedCalculator parameter longitude renaming to pose_longitude_DeadReckonUsingSpeedCalculator
INFO 2020-11-12 15:20:20,366Z lrauvNc4ToNetcdf.py createSeries():241 latitude :  117 v_t values found before 2018-08-24 07:03:00 and after 2018-08-24 07:14:00
INFO 2020-11-12 15:20:20,383Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group DeadReckonUsingSpeedCalculator parameter latitude renaming to pose_latitude_DeadReckonUsingSpeedCalculator
INFO 2020-11-12 15:20:20,384Z lrauvNc4ToNetcdf.py createSeries():241 depth    :  117 v_t values found before 2018-08-24 07:03:00 and after 2018-08-24 07:14:00
INFO 2020-11-12 15:20:20,404Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group DeadReckonUsingSpeedCalculator parameter depth renaming to pose_depth_DeadReckonUsingSpeedCalculator
INFO 2020-11-12 15:20:20,432Z lrauvNc4ToNetcdf.py createSeries():241 platform_pitch_angle:  113 v_t values found before 2018-08-24 07:03:00 and after 2018-08-24 07:14:00
INFO 2020-11-12 15:20:20,495Z lrauvNc4ToNetcdf.py createNav():506 platform_pitch_angle -> pitch: {'units': 'n/a', 'standard_name': 'platform_pitch_angle', 'coordinates': 'time depth latitude longitude'}
INFO 2020-11-12 15:20:20,517Z lrauvNc4ToNetcdf.py createSeries():241 platform_roll_angle:  113 v_t values found before 2018-08-24 07:03:00 and after 2018-08-24 07:14:00
INFO 2020-11-12 15:20:20,579Z lrauvNc4ToNetcdf.py createNav():506 platform_roll_angle -> roll: {'units': 'rad', 'standard_name': 'platform_roll_angle', 'coordinates': 'time depth latitude longitude'}
INFO 2020-11-12 15:20:20,601Z lrauvNc4ToNetcdf.py createSeries():241 platform_orientation:  113 v_t values found before 2018-08-24 07:03:00 and after 2018-08-24 07:14:00
INFO 2020-11-12 15:20:20,662Z lrauvNc4ToNetcdf.py createNav():506 platform_orientation -> yaw: {'units': 'n/a', 'standard_name': 'platform_yaw_angle', 'coordinates': 'time depth latitude longitude'}
INFO 2020-11-12 15:20:20,663Z lrauvNc4ToNetcdf.py nudge_coords():651 /mbari/LRAUV/makai/missionlogs/2018/20180823_20180827/20180824T070253/201808240703_201808240714.nc4
INFO 2020-11-12 15:20:20,879Z lrauvNc4ToNetcdf.py nudge_coords():674 seg#  end_sec_diff end_lon_diff end_lat_diff len(segi)   seg_min u_drift (cm/s) v_drift (cm/s)     start datetime of segment
INFO 2020-11-12 15:20:20,880Z lrauvNc4ToNetcdf.py nudge_coords():691                  -            -            -         0      0.00              -              -                             -
INFO 2020-11-12 15:20:20,881Z lrauvNc4ToNetcdf.py nudge_coords():724    0:        0.337    0.0000793    0.0000055       162      1.26          -0.39           0.81 2018-08-24 07:09:09.710818052
INFO 2020-11-12 15:20:20,886Z lrauvNc4ToNetcdf.py nudge_coords():754    2:            -            -            -       757      5.73              -              -
INFO 2020-11-12 15:20:20,886Z lrauvNc4ToNetcdf.py nudge_coords():758 Points in final series = 919
INFO 2020-11-12 15:20:20,906Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():550 http://odss.mbari.org/trackingdb/position/makai_ac/between/20180824T060305/20180824T081453/data.csv
INFO 2020-11-12 15:20:20,935Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():573 Found 0 position values from the Tracking database
INFO 2020-11-12 15:20:20,937Z lrauvNc4ToNetcdf.py processResampleNc4File():1190 ['oxygen', 'PAR', 'chlorophyll', 'chl', 'bbp470', 'bbp650', 'fix_time', 'fix_latitude', 'fix_longitude', 'control_inputs_buoyancy_position', 'control_inputs_elevator_angle', 'control_inputs_mass_position', 'control_inputs_rudder_angle', 'control_inputs_propeller_rotation_rate', 'pose_longitude_DeadReckonUsingSpeedCalculator', 'pose_latitude_DeadReckonUsingSpeedCalculator', 'pose_depth_DeadReckonUsingSpeedCalculator', 'pitch', 'roll', 'yaw', 'latitude', 'longitude', 'depth', 'time']
INFO 2020-11-12 15:20:21,463Z lrauvNc4ToNetcdf.py processResampleNc4File():1193 Wrote /mbari/LRAUV/makai/missionlogs/2018/20180823_20180827/20180824T070253/201808240703_201808240714_2S_scieng.nc