INFO 2020-11-12 15:20:06,094Z lrauvNc4ToNetcdf.py processResampleNc4File():1043 Reading /mbari/LRAUV/makai/missionlogs/2018/20180823_20180827/20180824T051635/201808240516_201808240702.nc4 file... INFO 2020-11-12 15:20:06,094Z lrauvNc4ToNetcdf.py processResampleNc4File():1044 After copying to /tmp/201808240516_201808240702.nc4 INFO 2020-11-12 15:20:07,241Z lrauvNc4ToNetcdf.py processResampleNc4File():1046 Read file /mbari/LRAUV/makai/missionlogs/2018/20180823_20180827/20180824T051635/201808240516_201808240702.nc4 INFO 2020-11-12 15:20:07,272Z lrauvNc4ToNetcdf.py createSeries():241 latitude : 32 v_t values found before 2018-08-24 05:16:00 and after 2018-08-24 07:02:00 INFO 2020-11-12 15:20:08,075Z lrauvNc4ToNetcdf.py createSeries():241 longitude: 32 v_t values found before 2018-08-24 05:16:00 and after 2018-08-24 07:02:00 INFO 2020-11-12 15:20:08,684Z lrauvNc4ToNetcdf.py createSeries():241 depth : 31 v_t values found before 2018-08-24 05:16:00 and after 2018-08-24 07:02:00 INFO 2020-11-12 15:20:08,937Z lrauvNc4ToNetcdf.py createSeries():241 time : 31 v_t values found before 2018-08-24 05:16:00 and after 2018-08-24 07:02:00 INFO 2020-11-12 15:20:09,185Z lrauvNc4ToNetcdf.py createSeries():241 latitude : 32 v_t values found before 2018-08-24 05:16:00 and after 2018-08-24 07:02:00 INFO 2020-11-12 15:20:09,783Z lrauvNc4ToNetcdf.py createSeries():241 longitude: 32 v_t values found before 2018-08-24 05:16:00 and after 2018-08-24 07:02:00 INFO 2020-11-12 15:20:10,409Z lrauvNc4ToNetcdf.py createSeries():241 depth : 31 v_t values found before 2018-08-24 05:16:00 and after 2018-08-24 07:02:00 INFO 2020-11-12 15:20:10,655Z lrauvNc4ToNetcdf.py createSeries():241 time : 31 v_t values found before 2018-08-24 05:16:00 and after 2018-08-24 07:02:00 INFO 2020-11-12 15:20:10,907Z lrauvNc4ToNetcdf.py createSeries():241 latitude : 32 v_t values found before 2018-08-24 05:16:00 and after 2018-08-24 07:02:00 INFO 2020-11-12 15:20:11,507Z lrauvNc4ToNetcdf.py createSeries():241 longitude: 32 v_t values found before 2018-08-24 05:16:00 and after 2018-08-24 07:02:00 INFO 2020-11-12 15:20:12,114Z lrauvNc4ToNetcdf.py createSeries():241 depth : 31 v_t values found before 2018-08-24 05:16:00 and after 2018-08-24 07:02:00 INFO 2020-11-12 15:20:12,361Z lrauvNc4ToNetcdf.py createSeries():241 time : 31 v_t values found before 2018-08-24 05:16:00 and after 2018-08-24 07:02:00 INFO 2020-11-12 15:20:12,610Z lrauvNc4ToNetcdf.py createSeries():241 latitude : 32 v_t values found before 2018-08-24 05:16:00 and after 2018-08-24 07:02:00 INFO 2020-11-12 15:20:13,207Z lrauvNc4ToNetcdf.py createSeries():241 longitude: 32 v_t values found before 2018-08-24 05:16:00 and after 2018-08-24 07:02:00 INFO 2020-11-12 15:20:13,810Z lrauvNc4ToNetcdf.py createSeries():241 depth : 31 v_t values found before 2018-08-24 05:16:00 and after 2018-08-24 07:02:00 INFO 2020-11-12 15:20:14,063Z lrauvNc4ToNetcdf.py createSeries():241 time : 31 v_t values found before 2018-08-24 05:16:00 and after 2018-08-24 07:02:00 INFO 2020-11-12 15:20:14,282Z lrauvNc4ToNetcdf.py processResampleNc4File():1059 Creating t variable of the time indexes INFO 2020-11-12 15:20:14,293Z lrauvNc4ToNetcdf.py createSeries():241 mass_concentration_of_oxygen_in_sea_water: 12 v_t values found before 2018-08-24 05:16:00 and after 2018-08-24 07:02:00 INFO 2020-11-12 15:20:14,338Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group Aanderaa_O2 parameter mass_concentration_of_oxygen_in_sea_water renaming to oxygen INFO 2020-11-12 15:20:14,339Z lrauvNc4ToNetcdf.py createSeries():241 sea_water_salinity: 12 v_t values found before 2018-08-24 05:16:00 and after 2018-08-24 07:02:00 INFO 2020-11-12 15:20:14,386Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group CTD_Seabird parameter sea_water_salinity renaming to salinity INFO 2020-11-12 15:20:14,388Z lrauvNc4ToNetcdf.py createSeries():241 sea_water_temperature: 12 v_t values found before 2018-08-24 05:16:00 and after 2018-08-24 07:02:00 INFO 2020-11-12 15:20:14,435Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group CTD_Seabird parameter sea_water_temperature renaming to temperature INFO 2020-11-12 15:20:14,438Z lrauvNc4ToNetcdf.py processResampleNc4File():1097 Variable bin_median_sea_water_salinity empty so skipping INFO 2020-11-12 15:20:14,440Z lrauvNc4ToNetcdf.py processResampleNc4File():1097 Variable bin_median_sea_water_temperature empty so skipping INFO 2020-11-12 15:20:14,442Z lrauvNc4ToNetcdf.py createSeries():241 downwelling_photosynthetic_photon_flux_in_sea_water: 31 v_t values found before 2018-08-24 05:16:00 and after 2018-08-24 07:02:00 INFO 2020-11-12 15:20:14,628Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group PAR_Licor parameter downwelling_photosynthetic_photon_flux_in_sea_water renaming to PAR INFO 2020-11-12 15:20:14,630Z lrauvNc4ToNetcdf.py createSeries():241 mass_concentration_of_chlorophyll_in_sea_water: 24 v_t values found before 2018-08-24 05:16:00 and after 2018-08-24 07:02:00 INFO 2020-11-12 15:20:14,719Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group WetLabsBB2FL parameter mass_concentration_of_chlorophyll_in_sea_water renaming to chlorophyll INFO 2020-11-12 15:20:14,721Z lrauvNc4ToNetcdf.py createSeries():241 OutputChl: 24 v_t values found before 2018-08-24 05:16:00 and after 2018-08-24 07:02:00 INFO 2020-11-12 15:20:14,810Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group WetLabsBB2FL parameter OutputChl renaming to chl INFO 2020-11-12 15:20:14,811Z lrauvNc4ToNetcdf.py createSeries():241 Output470: 24 v_t values found before 2018-08-24 05:16:00 and after 2018-08-24 07:02:00 INFO 2020-11-12 15:20:14,901Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group WetLabsBB2FL parameter Output470 renaming to bbp470 INFO 2020-11-12 15:20:14,903Z lrauvNc4ToNetcdf.py createSeries():241 Output650: 24 v_t values found before 2018-08-24 05:16:00 and after 2018-08-24 07:02:00 INFO 2020-11-12 15:20:14,992Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group WetLabsBB2FL parameter Output650 renaming to bbp650 INFO 2020-11-12 15:20:14,993Z lrauvNc4ToNetcdf.py createSeries():241 bin_mean_mass_concentration_of_chlorophyll_in_sea_water: 2 v_t values found before 2018-08-24 05:16:00 and after 2018-08-24 07:02:00 INFO 2020-11-12 15:20:15,007Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group WetLabsBB2FL parameter bin_mean_mass_concentration_of_chlorophyll_in_sea_water renaming to chlorophyll INFO 2020-11-12 15:20:15,008Z lrauvNc4ToNetcdf.py createSeries():241 bin_median_mass_concentration_of_chlorophyll_in_sea_water: 2 v_t values found before 2018-08-24 05:16:00 and after 2018-08-24 07:02:00 INFO 2020-11-12 15:20:15,022Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group WetLabsBB2FL parameter bin_median_mass_concentration_of_chlorophyll_in_sea_water renaming to chlorophyll INFO 2020-11-12 15:20:15,036Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group BPC1 parameter platform_battery_charge renaming to health_platform_battery_charge INFO 2020-11-12 15:20:15,048Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group BPC1 parameter platform_battery_voltage renaming to health_platform_average_voltage INFO 2020-11-12 15:20:15,054Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group NAL9602 parameter time_fix renaming to fix_time INFO 2020-11-12 15:20:15,059Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group NAL9602 parameter latitude_fix renaming to fix_latitude INFO 2020-11-12 15:20:15,065Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group NAL9602 parameter longitude_fix renaming to fix_longitude INFO 2020-11-12 15:20:15,135Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group BuoyancyServo parameter platform_buoyancy_position renaming to control_inputs_buoyancy_position INFO 2020-11-12 15:20:15,137Z lrauvNc4ToNetcdf.py createSeries():241 platform_elevator_angle: 4 v_t values found before 2018-08-24 05:16:00 and after 2018-08-24 07:02:00 INFO 2020-11-12 15:20:15,149Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group ElevatorServo parameter platform_elevator_angle renaming to control_inputs_elevator_angle INFO 2020-11-12 15:20:15,165Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group MassServo parameter platform_mass_position renaming to control_inputs_mass_position INFO 2020-11-12 15:20:15,167Z lrauvNc4ToNetcdf.py createSeries():241 platform_rudder_angle: 6 v_t values found before 2018-08-24 05:16:00 and after 2018-08-24 07:02:00 INFO 2020-11-12 15:20:15,181Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group RudderServo parameter platform_rudder_angle renaming to control_inputs_rudder_angle INFO 2020-11-12 15:20:15,183Z lrauvNc4ToNetcdf.py createSeries():241 platform_propeller_rotation_rate: 30 v_t values found before 2018-08-24 05:16:00 and after 2018-08-24 07:02:00 INFO 2020-11-12 15:20:15,226Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group ThrusterServo parameter platform_propeller_rotation_rate renaming to control_inputs_propeller_rotation_rate INFO 2020-11-12 15:20:15,228Z lrauvNc4ToNetcdf.py processResampleNc4File():1097 Variable fix_residual_percent_distance_traveled empty so skipping INFO 2020-11-12 15:20:15,230Z lrauvNc4ToNetcdf.py createSeries():241 longitude: 32 v_t values found before 2018-08-24 05:16:00 and after 2018-08-24 07:02:00 INFO 2020-11-12 15:20:15,417Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group DeadReckonUsingSpeedCalculator parameter longitude renaming to pose_longitude_DeadReckonUsingSpeedCalculator INFO 2020-11-12 15:20:15,419Z lrauvNc4ToNetcdf.py createSeries():241 latitude : 32 v_t values found before 2018-08-24 05:16:00 and after 2018-08-24 07:02:00 INFO 2020-11-12 15:20:15,606Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group DeadReckonUsingSpeedCalculator parameter latitude renaming to pose_latitude_DeadReckonUsingSpeedCalculator INFO 2020-11-12 15:20:15,608Z lrauvNc4ToNetcdf.py createSeries():241 depth : 32 v_t values found before 2018-08-24 05:16:00 and after 2018-08-24 07:02:00 INFO 2020-11-12 15:20:15,796Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group DeadReckonUsingSpeedCalculator parameter depth renaming to pose_depth_DeadReckonUsingSpeedCalculator INFO 2020-11-12 15:20:15,828Z lrauvNc4ToNetcdf.py createSeries():241 platform_pitch_angle: 23 v_t values found before 2018-08-24 05:16:00 and after 2018-08-24 07:02:00 INFO 2020-11-12 15:20:16,056Z lrauvNc4ToNetcdf.py createNav():506 platform_pitch_angle -> pitch: {'units': 'n/a', 'standard_name': 'platform_pitch_angle', 'coordinates': 'time depth latitude longitude'} INFO 2020-11-12 15:20:16,088Z lrauvNc4ToNetcdf.py createSeries():241 platform_roll_angle: 23 v_t values found before 2018-08-24 05:16:00 and after 2018-08-24 07:02:00 INFO 2020-11-12 15:20:16,314Z lrauvNc4ToNetcdf.py createNav():506 platform_roll_angle -> roll: {'units': 'rad', 'standard_name': 'platform_roll_angle', 'coordinates': 'time depth latitude longitude'} INFO 2020-11-12 15:20:16,344Z lrauvNc4ToNetcdf.py createSeries():241 platform_orientation: 23 v_t values found before 2018-08-24 05:16:00 and after 2018-08-24 07:02:00 INFO 2020-11-12 15:20:16,569Z lrauvNc4ToNetcdf.py createNav():506 platform_orientation -> yaw: {'units': 'n/a', 'standard_name': 'platform_yaw_angle', 'coordinates': 'time depth latitude longitude'} INFO 2020-11-12 15:20:16,569Z lrauvNc4ToNetcdf.py nudge_coords():651 /mbari/LRAUV/makai/missionlogs/2018/20180823_20180827/20180824T051635/201808240516_201808240702.nc4 INFO 2020-11-12 15:20:16,599Z lrauvNc4ToNetcdf.py var_series():601 Removing bad longitude times from /mbari/LRAUV/makai/missionlogs/2018/20180823_20180827/20180824T051635/201808240516_201808240702.nc4 ([index], [values]): [11293], ['2915-04-15 06:11:34.901665'] INFO 2020-11-12 15:20:16,835Z lrauvNc4ToNetcdf.py var_series():601 Removing bad latitude times from /mbari/LRAUV/makai/missionlogs/2018/20180823_20180827/20180824T051635/201808240516_201808240702.nc4 ([index], [values]): [11293], ['2915-04-15 06:11:34.901665'] INFO 2020-11-12 15:20:17,166Z lrauvNc4ToNetcdf.py nudge_coords():674 seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2020-11-12 15:20:17,167Z lrauvNc4ToNetcdf.py nudge_coords():691 - - - 0 0.00 - - - INFO 2020-11-12 15:20:17,168Z lrauvNc4ToNetcdf.py nudge_coords():724 0: 0.352 0.0006367 -0.0005142 204 1.56 29.03 -61.09 2018-08-24 05:20:50.889473915 INFO 2020-11-12 15:20:17,173Z lrauvNc4ToNetcdf.py nudge_coords():724 1: 0.247 0.0001857 0.0001383 333 2.78 -4.38 9.23 2018-08-24 05:23:37.989624023 INFO 2020-11-12 15:20:17,177Z lrauvNc4ToNetcdf.py nudge_coords():724 2: 0.358 0.0006823 0.0003117 205 2.21 -12.44 26.19 2018-08-24 05:25:50.619246960 INFO 2020-11-12 15:20:17,181Z lrauvNc4ToNetcdf.py nudge_coords():724 3: 0.324 -0.0002462 0.0002423 956 6.97 -3.06 6.45 2018-08-24 05:32:49.104115009 INFO 2020-11-12 15:20:17,186Z lrauvNc4ToNetcdf.py nudge_coords():724 4: 0.342 0.0000075 0.0000235 24 0.41 -5.05 10.64 2018-08-24 05:33:14.054965973 INFO 2020-11-12 15:20:17,190Z lrauvNc4ToNetcdf.py nudge_coords():724 5: 0.332 0.0001048 0.0000943 239 2.45 -3.38 7.13 2018-08-24 05:35:41.568939924 INFO 2020-11-12 15:20:17,194Z lrauvNc4ToNetcdf.py nudge_coords():724 6: 0.353 -0.0004304 -0.0000167 4657 31.64 0.05 -0.10 2018-08-24 06:07:20.395349979 INFO 2020-11-12 15:20:17,199Z lrauvNc4ToNetcdf.py nudge_coords():724 7: 0.351 0.0002698 0.0003610 1151 8.34 -3.80 8.02 2018-08-24 06:15:40.941416979 INFO 2020-11-12 15:20:17,203Z lrauvNc4ToNetcdf.py nudge_coords():724 8: 0.347 -0.0031070 -0.0025830 979 7.06 32.27 -67.83 2018-08-24 06:22:44.726454020 INFO 2020-11-12 15:20:17,208Z lrauvNc4ToNetcdf.py nudge_coords():724 9: 0.346 0.0037682 0.0032760 925 6.69 -42.90 90.74 2018-08-24 06:29:26.500505924 INFO 2020-11-12 15:20:17,212Z lrauvNc4ToNetcdf.py nudge_coords():724 10: 0.344 0.0020877 -0.0018210 937 6.69 23.94 -50.47 2018-08-24 06:36:08.015542030 INFO 2020-11-12 15:20:17,217Z lrauvNc4ToNetcdf.py nudge_coords():724 11: 0.288 -0.0034363 0.0027105 910 6.78 -34.98 74.11 2018-08-24 06:42:55.013253927 INFO 2020-11-12 15:20:17,221Z lrauvNc4ToNetcdf.py nudge_coords():724 12: 0.356 0.0004462 0.0000518 302 2.53 -1.79 3.80 2018-08-24 06:45:26.932380915 INFO 2020-11-12 15:20:17,225Z lrauvNc4ToNetcdf.py nudge_coords():754 14: - - - 2503 16.75 - - INFO 2020-11-12 15:20:17,225Z lrauvNc4ToNetcdf.py nudge_coords():758 Points in final series = 14325 INFO 2020-11-12 15:20:17,253Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():550 http://odss.mbari.org/trackingdb/position/makai_ac/between/20180824T041647/20180824T080212/data.csv INFO 2020-11-12 15:20:17,294Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():573 Found 0 position values from the Tracking database INFO 2020-11-12 15:20:17,298Z lrauvNc4ToNetcdf.py processResampleNc4File():1190 ['oxygen', 'salinity', 'temperature', 'PAR', 'chlorophyll', 'chl', 'bbp470', 'bbp650', 'health_platform_battery_charge', 'health_platform_average_voltage', 'fix_time', 'fix_latitude', 'fix_longitude', 'control_inputs_buoyancy_position', 'control_inputs_elevator_angle', 'control_inputs_mass_position', 'control_inputs_rudder_angle', 'control_inputs_propeller_rotation_rate', 'pose_longitude_DeadReckonUsingSpeedCalculator', 'pose_latitude_DeadReckonUsingSpeedCalculator', 'pose_depth_DeadReckonUsingSpeedCalculator', 'pitch', 'roll', 'yaw', 'latitude', 'longitude', 'depth', 'time'] INFO 2020-11-12 15:20:17,895Z lrauvNc4ToNetcdf.py processResampleNc4File():1193 Wrote /mbari/LRAUV/makai/missionlogs/2018/20180823_20180827/20180824T051635/201808240516_201808240702_2S_scieng.nc