INFO 2020-11-12 15:19:30,240Z lrauvNc4ToNetcdf.py processResampleNc4File():1043 Reading /mbari/LRAUV/makai/missionlogs/2018/20180823_20180827/20180823T232806/201808232328_201808240110.nc4 file...
INFO 2020-11-12 15:19:30,241Z lrauvNc4ToNetcdf.py processResampleNc4File():1044 After copying to /tmp/201808232328_201808240110.nc4
INFO 2020-11-12 15:19:31,385Z lrauvNc4ToNetcdf.py processResampleNc4File():1046 Read file /mbari/LRAUV/makai/missionlogs/2018/20180823_20180827/20180823T232806/201808232328_201808240110.nc4
INFO 2020-11-12 15:19:31,417Z lrauvNc4ToNetcdf.py createSeries():241 latitude :   78 v_t values found before 2018-08-23 23:28:00 and after 2018-08-24 01:10:00
INFO 2020-11-12 15:19:31,670Z lrauvNc4ToNetcdf.py createSeries():241 longitude:   78 v_t values found before 2018-08-23 23:28:00 and after 2018-08-24 01:10:00
INFO 2020-11-12 15:19:31,920Z lrauvNc4ToNetcdf.py createSeries():241 depth    :   78 v_t values found before 2018-08-23 23:28:00 and after 2018-08-24 01:10:00
INFO 2020-11-12 15:19:32,171Z lrauvNc4ToNetcdf.py createSeries():241 time     :   78 v_t values found before 2018-08-23 23:28:00 and after 2018-08-24 01:10:00
INFO 2020-11-12 15:19:32,417Z lrauvNc4ToNetcdf.py createSeries():241 latitude :   78 v_t values found before 2018-08-23 23:28:00 and after 2018-08-24 01:10:00
INFO 2020-11-12 15:19:32,664Z lrauvNc4ToNetcdf.py createSeries():241 longitude:   78 v_t values found before 2018-08-23 23:28:00 and after 2018-08-24 01:10:00
INFO 2020-11-12 15:19:32,911Z lrauvNc4ToNetcdf.py createSeries():241 depth    :   78 v_t values found before 2018-08-23 23:28:00 and after 2018-08-24 01:10:00
INFO 2020-11-12 15:19:33,160Z lrauvNc4ToNetcdf.py createSeries():241 time     :   78 v_t values found before 2018-08-23 23:28:00 and after 2018-08-24 01:10:00
INFO 2020-11-12 15:19:33,407Z lrauvNc4ToNetcdf.py createSeries():241 latitude :   78 v_t values found before 2018-08-23 23:28:00 and after 2018-08-24 01:10:00
INFO 2020-11-12 15:19:33,656Z lrauvNc4ToNetcdf.py createSeries():241 longitude:   78 v_t values found before 2018-08-23 23:28:00 and after 2018-08-24 01:10:00
INFO 2020-11-12 15:19:33,913Z lrauvNc4ToNetcdf.py createSeries():241 depth    :   78 v_t values found before 2018-08-23 23:28:00 and after 2018-08-24 01:10:00
INFO 2020-11-12 15:19:34,164Z lrauvNc4ToNetcdf.py createSeries():241 time     :   78 v_t values found before 2018-08-23 23:28:00 and after 2018-08-24 01:10:00
INFO 2020-11-12 15:19:34,411Z lrauvNc4ToNetcdf.py createSeries():241 latitude :   78 v_t values found before 2018-08-23 23:28:00 and after 2018-08-24 01:10:00
INFO 2020-11-12 15:19:34,659Z lrauvNc4ToNetcdf.py createSeries():241 longitude:   78 v_t values found before 2018-08-23 23:28:00 and after 2018-08-24 01:10:00
INFO 2020-11-12 15:19:34,905Z lrauvNc4ToNetcdf.py createSeries():241 depth    :   78 v_t values found before 2018-08-23 23:28:00 and after 2018-08-24 01:10:00
INFO 2020-11-12 15:19:35,154Z lrauvNc4ToNetcdf.py createSeries():241 time     :   78 v_t values found before 2018-08-23 23:28:00 and after 2018-08-24 01:10:00
INFO 2020-11-12 15:19:35,375Z lrauvNc4ToNetcdf.py processResampleNc4File():1059 Creating t variable of the time indexes
INFO 2020-11-12 15:19:35,467Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group Aanderaa_O2 parameter mass_concentration_of_oxygen_in_sea_water renaming to oxygen
INFO 2020-11-12 15:19:35,554Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group CTD_Seabird parameter sea_water_salinity renaming to salinity
INFO 2020-11-12 15:19:35,641Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group CTD_Seabird parameter sea_water_temperature renaming to temperature
INFO 2020-11-12 15:19:35,644Z lrauvNc4ToNetcdf.py processResampleNc4File():1097 Variable bin_median_sea_water_salinity empty so skipping
INFO 2020-11-12 15:19:35,646Z lrauvNc4ToNetcdf.py processResampleNc4File():1097 Variable bin_median_sea_water_temperature empty so skipping
INFO 2020-11-12 15:19:35,648Z lrauvNc4ToNetcdf.py createSeries():241 downwelling_photosynthetic_photon_flux_in_sea_water:   78 v_t values found before 2018-08-23 23:28:00 and after 2018-08-24 01:10:00
INFO 2020-11-12 15:19:35,832Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group PAR_Licor parameter downwelling_photosynthetic_photon_flux_in_sea_water renaming to PAR
INFO 2020-11-12 15:19:35,994Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group WetLabsBB2FL parameter mass_concentration_of_chlorophyll_in_sea_water renaming to chlorophyll
INFO 2020-11-12 15:19:36,156Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group WetLabsBB2FL parameter OutputChl renaming to chl
INFO 2020-11-12 15:19:36,316Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group WetLabsBB2FL parameter Output470 renaming to bbp470
INFO 2020-11-12 15:19:36,477Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group WetLabsBB2FL parameter Output650 renaming to bbp650
INFO 2020-11-12 15:19:36,498Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group WetLabsBB2FL parameter bin_mean_mass_concentration_of_chlorophyll_in_sea_water renaming to chlorophyll
INFO 2020-11-12 15:19:36,520Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group WetLabsBB2FL parameter bin_median_mass_concentration_of_chlorophyll_in_sea_water renaming to chlorophyll
INFO 2020-11-12 15:19:36,534Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group BPC1 parameter platform_battery_charge renaming to health_platform_battery_charge
INFO 2020-11-12 15:19:36,547Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group BPC1 parameter platform_battery_voltage renaming to health_platform_average_voltage
INFO 2020-11-12 15:19:36,548Z lrauvNc4ToNetcdf.py createSeries():241 time_fix :    1 v_t values found before 2018-08-23 23:28:00 and after 2018-08-24 01:10:00
INFO 2020-11-12 15:19:36,554Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group NAL9602 parameter time_fix renaming to fix_time
INFO 2020-11-12 15:19:36,555Z lrauvNc4ToNetcdf.py createSeries():241 latitude_fix:    1 v_t values found before 2018-08-23 23:28:00 and after 2018-08-24 01:10:00
INFO 2020-11-12 15:19:36,560Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group NAL9602 parameter latitude_fix renaming to fix_latitude
INFO 2020-11-12 15:19:36,562Z lrauvNc4ToNetcdf.py createSeries():241 longitude_fix:    1 v_t values found before 2018-08-23 23:28:00 and after 2018-08-24 01:10:00
INFO 2020-11-12 15:19:36,567Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group NAL9602 parameter longitude_fix renaming to fix_longitude
INFO 2020-11-12 15:19:36,569Z lrauvNc4ToNetcdf.py createSeries():241 platform_buoyancy_position:   79 v_t values found before 2018-08-23 23:28:00 and after 2018-08-24 01:10:00
INFO 2020-11-12 15:19:36,642Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group BuoyancyServo parameter platform_buoyancy_position renaming to control_inputs_buoyancy_position
INFO 2020-11-12 15:19:36,652Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group ElevatorServo parameter platform_elevator_angle renaming to control_inputs_elevator_angle
INFO 2020-11-12 15:19:36,674Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group MassServo parameter platform_mass_position renaming to control_inputs_mass_position
INFO 2020-11-12 15:19:36,679Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group RudderServo parameter platform_rudder_angle renaming to control_inputs_rudder_angle
INFO 2020-11-12 15:19:36,694Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group ThrusterServo parameter platform_propeller_rotation_rate renaming to control_inputs_propeller_rotation_rate
INFO 2020-11-12 15:19:36,697Z lrauvNc4ToNetcdf.py processResampleNc4File():1097 Variable fix_residual_percent_distance_traveled empty so skipping
INFO 2020-11-12 15:19:36,699Z lrauvNc4ToNetcdf.py createSeries():241 longitude:   78 v_t values found before 2018-08-23 23:28:00 and after 2018-08-24 01:10:00
INFO 2020-11-12 15:19:36,881Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group DeadReckonUsingSpeedCalculator parameter longitude renaming to pose_longitude_DeadReckonUsingSpeedCalculator
INFO 2020-11-12 15:19:36,883Z lrauvNc4ToNetcdf.py createSeries():241 latitude :   78 v_t values found before 2018-08-23 23:28:00 and after 2018-08-24 01:10:00
INFO 2020-11-12 15:19:37,068Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group DeadReckonUsingSpeedCalculator parameter latitude renaming to pose_latitude_DeadReckonUsingSpeedCalculator
INFO 2020-11-12 15:19:37,070Z lrauvNc4ToNetcdf.py createSeries():241 depth    :   78 v_t values found before 2018-08-23 23:28:00 and after 2018-08-24 01:10:00
INFO 2020-11-12 15:19:37,255Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group DeadReckonUsingSpeedCalculator parameter depth renaming to pose_depth_DeadReckonUsingSpeedCalculator
INFO 2020-11-12 15:19:37,287Z lrauvNc4ToNetcdf.py createSeries():241 platform_pitch_angle:   74 v_t values found before 2018-08-23 23:28:00 and after 2018-08-24 01:10:00
INFO 2020-11-12 15:19:37,518Z lrauvNc4ToNetcdf.py createNav():506 platform_pitch_angle -> pitch: {'units': 'n/a', 'standard_name': 'platform_pitch_angle', 'coordinates': 'time depth latitude longitude'}
INFO 2020-11-12 15:19:37,549Z lrauvNc4ToNetcdf.py createSeries():241 platform_roll_angle:   74 v_t values found before 2018-08-23 23:28:00 and after 2018-08-24 01:10:00
INFO 2020-11-12 15:19:37,779Z lrauvNc4ToNetcdf.py createNav():506 platform_roll_angle -> roll: {'units': 'rad', 'standard_name': 'platform_roll_angle', 'coordinates': 'time depth latitude longitude'}
INFO 2020-11-12 15:19:37,811Z lrauvNc4ToNetcdf.py createSeries():241 platform_orientation:   74 v_t values found before 2018-08-23 23:28:00 and after 2018-08-24 01:10:00
INFO 2020-11-12 15:19:38,042Z lrauvNc4ToNetcdf.py createNav():506 platform_orientation -> yaw: {'units': 'n/a', 'standard_name': 'platform_yaw_angle', 'coordinates': 'time depth latitude longitude'}
INFO 2020-11-12 15:19:38,043Z lrauvNc4ToNetcdf.py nudge_coords():651 /mbari/LRAUV/makai/missionlogs/2018/20180823_20180827/20180823T232806/201808232328_201808240110.nc4
INFO 2020-11-12 15:19:38,649Z lrauvNc4ToNetcdf.py nudge_coords():674 seg#  end_sec_diff end_lon_diff end_lat_diff len(segi)   seg_min u_drift (cm/s) v_drift (cm/s)     start datetime of segment
INFO 2020-11-12 15:19:38,650Z lrauvNc4ToNetcdf.py nudge_coords():691                  -            -            -         0      0.00              -              -                             -
INFO 2020-11-12 15:19:38,652Z lrauvNc4ToNetcdf.py nudge_coords():724    0:        0.359   -0.0024100    0.0003220       150      1.20         -24.03          49.83 2018-08-23 23:39:02.920557022
INFO 2020-11-12 15:19:38,656Z lrauvNc4ToNetcdf.py nudge_coords():724    1:        0.364    0.0002797    0.0001065       426      3.36          -2.83           5.88 2018-08-23 23:42:24.760523081
INFO 2020-11-12 15:19:38,660Z lrauvNc4ToNetcdf.py nudge_coords():724    2:        0.353    0.0020475    0.0015161      9015     61.05          -2.21           4.60 2018-08-24 00:43:28.361628056
INFO 2020-11-12 15:19:38,666Z lrauvNc4ToNetcdf.py nudge_coords():724    3:        0.341    0.0002560   -0.0006982       317      2.86          21.78         -45.28 2018-08-24 00:46:20.217979908
INFO 2020-11-12 15:19:38,670Z lrauvNc4ToNetcdf.py nudge_coords():724    4:        0.339    0.0000138    0.0000265        41      0.27          -8.87          18.44 2018-08-24 00:46:36.609761
INFO 2020-11-12 15:19:38,674Z lrauvNc4ToNetcdf.py nudge_coords():724    5:        0.358   -0.0001257   -0.0009130      1231      8.81           9.25         -19.21 2018-08-24 00:55:25.459177971
INFO 2020-11-12 15:19:38,679Z lrauvNc4ToNetcdf.py nudge_coords():724    6:        0.264    0.0013653    0.0015723       859      6.62         -21.13          43.99 2018-08-24 01:02:03.260567904
INFO 2020-11-12 15:19:38,683Z lrauvNc4ToNetcdf.py nudge_coords():724    7:        0.348    0.0001523    0.0000783       143      1.98          -3.52           7.33 2018-08-24 01:04:02.508829117
INFO 2020-11-12 15:19:38,688Z lrauvNc4ToNetcdf.py nudge_coords():724    8:        0.315    0.0004302    0.0003257       323      2.78         -10.42          21.72 2018-08-24 01:06:49.757999897
INFO 2020-11-12 15:19:38,692Z lrauvNc4ToNetcdf.py nudge_coords():724    9:        0.345   -0.0000087   -0.0000039        13      0.08           4.31          -8.98 2018-08-24 01:06:55.059832096
INFO 2020-11-12 15:19:38,696Z lrauvNc4ToNetcdf.py nudge_coords():724   10:        0.340   -0.0002480   -0.0003280        29      0.40          72.69        -151.34 2018-08-24 01:07:19.559113026
INFO 2020-11-12 15:19:38,700Z lrauvNc4ToNetcdf.py nudge_coords():724   11:        0.340    0.0002493    0.0001245       420      3.15          -3.51           7.31 2018-08-24 01:10:29.153681993
INFO 2020-11-12 15:19:38,704Z lrauvNc4ToNetcdf.py nudge_coords():754   13:            -            -            -        12      0.14              -              -
INFO 2020-11-12 15:19:38,704Z lrauvNc4ToNetcdf.py nudge_coords():758 Points in final series = 12979
INFO 2020-11-12 15:19:38,734Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():550 http://odss.mbari.org/trackingdb/position/makai_ac/between/20180823T222806/20180824T021038/data.csv
INFO 2020-11-12 15:19:38,772Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():573 Found 0 position values from the Tracking database
INFO 2020-11-12 15:19:38,776Z lrauvNc4ToNetcdf.py processResampleNc4File():1190 ['oxygen', 'salinity', 'temperature', 'PAR', 'chlorophyll', 'chl', 'bbp470', 'bbp650', 'health_platform_battery_charge', 'health_platform_average_voltage', 'fix_time', 'fix_latitude', 'fix_longitude', 'control_inputs_buoyancy_position', 'control_inputs_elevator_angle', 'control_inputs_mass_position', 'control_inputs_rudder_angle', 'control_inputs_propeller_rotation_rate', 'pose_longitude_DeadReckonUsingSpeedCalculator', 'pose_latitude_DeadReckonUsingSpeedCalculator', 'pose_depth_DeadReckonUsingSpeedCalculator', 'pitch', 'roll', 'yaw', 'latitude', 'longitude', 'depth', 'time']
INFO 2020-11-12 15:19:39,237Z lrauvNc4ToNetcdf.py processResampleNc4File():1193 Wrote /mbari/LRAUV/makai/missionlogs/2018/20180823_20180827/20180823T232806/201808232328_201808240110_2S_scieng.nc