INFO 2020-11-12 15:19:16,129Z lrauvNc4ToNetcdf.py processResampleNc4File():1043 Reading /mbari/LRAUV/makai/missionlogs/2018/20180823_20180827/20180823T201709/201808232017_201808232328.nc4 file...
INFO 2020-11-12 15:19:16,130Z lrauvNc4ToNetcdf.py processResampleNc4File():1044 After copying to /tmp/201808232017_201808232328.nc4
INFO 2020-11-12 15:19:17,473Z lrauvNc4ToNetcdf.py processResampleNc4File():1046 Read file /mbari/LRAUV/makai/missionlogs/2018/20180823_20180827/20180823T201709/201808232017_201808232328.nc4
INFO 2020-11-12 15:19:17,517Z lrauvNc4ToNetcdf.py createSeries():241 latitude :   13 v_t values found before 2018-08-23 20:17:00 and after 2018-08-23 23:28:00
INFO 2020-11-12 15:19:17,938Z lrauvNc4ToNetcdf.py createSeries():241 longitude:   13 v_t values found before 2018-08-23 20:17:00 and after 2018-08-23 23:28:00
INFO 2020-11-12 15:19:18,359Z lrauvNc4ToNetcdf.py createSeries():241 depth    :   13 v_t values found before 2018-08-23 20:17:00 and after 2018-08-23 23:28:00
INFO 2020-11-12 15:19:18,785Z lrauvNc4ToNetcdf.py createSeries():241 time     :   13 v_t values found before 2018-08-23 20:17:00 and after 2018-08-23 23:28:00
INFO 2020-11-12 15:19:19,198Z lrauvNc4ToNetcdf.py createSeries():241 latitude :   13 v_t values found before 2018-08-23 20:17:00 and after 2018-08-23 23:28:00
INFO 2020-11-12 15:19:19,603Z lrauvNc4ToNetcdf.py createSeries():241 longitude:   13 v_t values found before 2018-08-23 20:17:00 and after 2018-08-23 23:28:00
INFO 2020-11-12 15:19:20,018Z lrauvNc4ToNetcdf.py createSeries():241 depth    :   13 v_t values found before 2018-08-23 20:17:00 and after 2018-08-23 23:28:00
INFO 2020-11-12 15:19:20,427Z lrauvNc4ToNetcdf.py createSeries():241 time     :   13 v_t values found before 2018-08-23 20:17:00 and after 2018-08-23 23:28:00
INFO 2020-11-12 15:19:20,841Z lrauvNc4ToNetcdf.py createSeries():241 latitude :   13 v_t values found before 2018-08-23 20:17:00 and after 2018-08-23 23:28:00
INFO 2020-11-12 15:19:21,251Z lrauvNc4ToNetcdf.py createSeries():241 longitude:   13 v_t values found before 2018-08-23 20:17:00 and after 2018-08-23 23:28:00
INFO 2020-11-12 15:19:21,666Z lrauvNc4ToNetcdf.py createSeries():241 depth    :   13 v_t values found before 2018-08-23 20:17:00 and after 2018-08-23 23:28:00
INFO 2020-11-12 15:19:22,100Z lrauvNc4ToNetcdf.py createSeries():241 time     :   13 v_t values found before 2018-08-23 20:17:00 and after 2018-08-23 23:28:00
INFO 2020-11-12 15:19:22,511Z lrauvNc4ToNetcdf.py createSeries():241 latitude :   13 v_t values found before 2018-08-23 20:17:00 and after 2018-08-23 23:28:00
INFO 2020-11-12 15:19:22,929Z lrauvNc4ToNetcdf.py createSeries():241 longitude:   13 v_t values found before 2018-08-23 20:17:00 and after 2018-08-23 23:28:00
INFO 2020-11-12 15:19:23,347Z lrauvNc4ToNetcdf.py createSeries():241 depth    :   13 v_t values found before 2018-08-23 20:17:00 and after 2018-08-23 23:28:00
INFO 2020-11-12 15:19:23,770Z lrauvNc4ToNetcdf.py createSeries():241 time     :   13 v_t values found before 2018-08-23 20:17:00 and after 2018-08-23 23:28:00
INFO 2020-11-12 15:19:24,143Z lrauvNc4ToNetcdf.py processResampleNc4File():1059 Creating t variable of the time indexes
INFO 2020-11-12 15:19:24,261Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group Aanderaa_O2 parameter mass_concentration_of_oxygen_in_sea_water renaming to oxygen
INFO 2020-11-12 15:19:24,370Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group CTD_Seabird parameter sea_water_salinity renaming to salinity
INFO 2020-11-12 15:19:24,479Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group CTD_Seabird parameter sea_water_temperature renaming to temperature
INFO 2020-11-12 15:19:24,481Z lrauvNc4ToNetcdf.py processResampleNc4File():1097 Variable bin_median_sea_water_salinity empty so skipping
INFO 2020-11-12 15:19:24,483Z lrauvNc4ToNetcdf.py processResampleNc4File():1097 Variable bin_median_sea_water_temperature empty so skipping
INFO 2020-11-12 15:19:24,488Z lrauvNc4ToNetcdf.py createSeries():241 downwelling_photosynthetic_photon_flux_in_sea_water:   13 v_t values found before 2018-08-23 20:17:00 and after 2018-08-23 23:28:00
INFO 2020-11-12 15:19:24,824Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group PAR_Licor parameter downwelling_photosynthetic_photon_flux_in_sea_water renaming to PAR
INFO 2020-11-12 15:19:25,034Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group WetLabsBB2FL parameter mass_concentration_of_chlorophyll_in_sea_water renaming to chlorophyll
INFO 2020-11-12 15:19:25,240Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group WetLabsBB2FL parameter OutputChl renaming to chl
INFO 2020-11-12 15:19:25,447Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group WetLabsBB2FL parameter Output470 renaming to bbp470
INFO 2020-11-12 15:19:25,653Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group WetLabsBB2FL parameter Output650 renaming to bbp650
INFO 2020-11-12 15:19:25,679Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group WetLabsBB2FL parameter bin_mean_mass_concentration_of_chlorophyll_in_sea_water renaming to chlorophyll
INFO 2020-11-12 15:19:25,705Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group WetLabsBB2FL parameter bin_median_mass_concentration_of_chlorophyll_in_sea_water renaming to chlorophyll
INFO 2020-11-12 15:19:25,720Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group BPC1 parameter platform_battery_charge renaming to health_platform_battery_charge
INFO 2020-11-12 15:19:25,733Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group BPC1 parameter platform_battery_voltage renaming to health_platform_average_voltage
INFO 2020-11-12 15:19:25,739Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group NAL9602 parameter time_fix renaming to fix_time
INFO 2020-11-12 15:19:25,748Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group NAL9602 parameter latitude_fix renaming to fix_latitude
INFO 2020-11-12 15:19:25,757Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group NAL9602 parameter longitude_fix renaming to fix_longitude
INFO 2020-11-12 15:19:25,874Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group BuoyancyServo parameter platform_buoyancy_position renaming to control_inputs_buoyancy_position
INFO 2020-11-12 15:19:25,889Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group ElevatorServo parameter platform_elevator_angle renaming to control_inputs_elevator_angle
INFO 2020-11-12 15:19:25,917Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group MassServo parameter platform_mass_position renaming to control_inputs_mass_position
INFO 2020-11-12 15:19:25,928Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group RudderServo parameter platform_rudder_angle renaming to control_inputs_rudder_angle
INFO 2020-11-12 15:19:25,954Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group ThrusterServo parameter platform_propeller_rotation_rate renaming to control_inputs_propeller_rotation_rate
INFO 2020-11-12 15:19:25,956Z lrauvNc4ToNetcdf.py processResampleNc4File():1097 Variable fix_residual_percent_distance_traveled empty so skipping
INFO 2020-11-12 15:19:25,961Z lrauvNc4ToNetcdf.py createSeries():241 longitude:   13 v_t values found before 2018-08-23 20:17:00 and after 2018-08-23 23:28:00
INFO 2020-11-12 15:19:26,293Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group DeadReckonUsingSpeedCalculator parameter longitude renaming to pose_longitude_DeadReckonUsingSpeedCalculator
INFO 2020-11-12 15:19:26,298Z lrauvNc4ToNetcdf.py createSeries():241 latitude :   13 v_t values found before 2018-08-23 20:17:00 and after 2018-08-23 23:28:00
INFO 2020-11-12 15:19:26,625Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group DeadReckonUsingSpeedCalculator parameter latitude renaming to pose_latitude_DeadReckonUsingSpeedCalculator
INFO 2020-11-12 15:19:26,630Z lrauvNc4ToNetcdf.py createSeries():241 depth    :   13 v_t values found before 2018-08-23 20:17:00 and after 2018-08-23 23:28:00
INFO 2020-11-12 15:19:26,962Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group DeadReckonUsingSpeedCalculator parameter depth renaming to pose_depth_DeadReckonUsingSpeedCalculator
INFO 2020-11-12 15:19:27,010Z lrauvNc4ToNetcdf.py createSeries():241 platform_pitch_angle:   10 v_t values found before 2018-08-23 20:17:00 and after 2018-08-23 23:28:00
INFO 2020-11-12 15:19:27,391Z lrauvNc4ToNetcdf.py createNav():506 platform_pitch_angle -> pitch: {'units': 'n/a', 'standard_name': 'platform_pitch_angle', 'coordinates': 'time depth latitude longitude'}
INFO 2020-11-12 15:19:27,436Z lrauvNc4ToNetcdf.py createSeries():241 platform_roll_angle:   10 v_t values found before 2018-08-23 20:17:00 and after 2018-08-23 23:28:00
INFO 2020-11-12 15:19:27,819Z lrauvNc4ToNetcdf.py createNav():506 platform_roll_angle -> roll: {'units': 'rad', 'standard_name': 'platform_roll_angle', 'coordinates': 'time depth latitude longitude'}
INFO 2020-11-12 15:19:27,866Z lrauvNc4ToNetcdf.py createSeries():241 platform_orientation:   10 v_t values found before 2018-08-23 20:17:00 and after 2018-08-23 23:28:00
INFO 2020-11-12 15:19:28,256Z lrauvNc4ToNetcdf.py createNav():506 platform_orientation -> yaw: {'units': 'n/a', 'standard_name': 'platform_yaw_angle', 'coordinates': 'time depth latitude longitude'}
INFO 2020-11-12 15:19:28,256Z lrauvNc4ToNetcdf.py nudge_coords():651 /mbari/LRAUV/makai/missionlogs/2018/20180823_20180827/20180823T201709/201808232017_201808232328.nc4
INFO 2020-11-12 15:19:29,222Z lrauvNc4ToNetcdf.py nudge_coords():674 seg#  end_sec_diff end_lon_diff end_lat_diff len(segi)   seg_min u_drift (cm/s) v_drift (cm/s)     start datetime of segment
INFO 2020-11-12 15:19:29,223Z lrauvNc4ToNetcdf.py nudge_coords():691                  -            -            -         0      0.00              -              -                             -
INFO 2020-11-12 15:19:29,224Z lrauvNc4ToNetcdf.py nudge_coords():724    0:        0.345    0.0005112    0.0000407       918      7.35          -0.50           1.03 2018-08-23 20:32:07.179611921
INFO 2020-11-12 15:19:29,229Z lrauvNc4ToNetcdf.py nudge_coords():724    1:        0.348    0.0002390    0.0000553       469      3.97          -1.26           2.58 2018-08-23 20:36:05.664635897
INFO 2020-11-12 15:19:29,234Z lrauvNc4ToNetcdf.py nudge_coords():724    2:        0.336    0.0004659    0.0003244      2974     20.02          -1.46           3.00 2018-08-23 20:56:07.491884947
INFO 2020-11-12 15:19:29,239Z lrauvNc4ToNetcdf.py nudge_coords():724    3:        0.351    0.0005693   -0.0000200      1173      8.49           0.21          -0.44 2018-08-23 21:04:37.409301043
INFO 2020-11-12 15:19:29,243Z lrauvNc4ToNetcdf.py nudge_coords():724    4:        0.366    0.0006405    0.0007698       906      6.94          -9.98          20.56 2018-08-23 21:11:34.192986965
INFO 2020-11-12 15:19:29,248Z lrauvNc4ToNetcdf.py nudge_coords():724    5:        0.319   -0.0001367    0.0003467       173      1.81         -17.24          35.53 2018-08-23 21:13:23.153260946
INFO 2020-11-12 15:19:29,252Z lrauvNc4ToNetcdf.py nudge_coords():724    6:        0.331    0.0004447   -0.0008365       407      2.80          26.90         -55.41 2018-08-23 21:16:11.377130985
INFO 2020-11-12 15:19:29,256Z lrauvNc4ToNetcdf.py nudge_coords():724    7:        0.340    0.0002470   -0.0000070       212      1.60           0.39          -0.81 2018-08-23 21:17:47.501668930
INFO 2020-11-12 15:19:29,261Z lrauvNc4ToNetcdf.py nudge_coords():724    8:        0.354    0.0016453    0.0009307      5903     40.41          -2.07           4.27 2018-08-23 21:58:12.423361063
INFO 2020-11-12 15:19:29,266Z lrauvNc4ToNetcdf.py nudge_coords():724    9:        0.355    0.0003548    0.0000687      1128      8.56          -0.72           1.49 2018-08-23 22:06:46.379991055
INFO 2020-11-12 15:19:29,270Z lrauvNc4ToNetcdf.py nudge_coords():724   10:        0.346    0.0000978   -0.0000117       226      2.22           0.47          -0.97 2018-08-23 22:09:00.246433020
INFO 2020-11-12 15:19:29,274Z lrauvNc4ToNetcdf.py nudge_coords():724   11:        0.274    0.0000628   -0.0000172       235      2.32           0.67          -1.37 2018-08-23 22:11:19.607239008
INFO 2020-11-12 15:19:29,279Z lrauvNc4ToNetcdf.py nudge_coords():724   12:        0.354    0.0005385    0.0000881       590      3.93          -2.01           4.15 2018-08-23 22:15:15.782506943
INFO 2020-11-12 15:19:29,283Z lrauvNc4ToNetcdf.py nudge_coords():724   13:        0.332    0.0002525    0.0000435       165      1.44          -2.72           5.61 2018-08-23 22:16:42.342012882
INFO 2020-11-12 15:19:29,288Z lrauvNc4ToNetcdf.py nudge_coords():724   14:        0.356    0.0010228    0.0003178      2616     18.57          -1.53           3.17 2018-08-23 22:35:16.866652012
INFO 2020-11-12 15:19:29,292Z lrauvNc4ToNetcdf.py nudge_coords():724   15:        0.362    0.0002240    0.0000517       213      2.01          -2.31           4.77 2018-08-23 22:37:17.827079058
INFO 2020-11-12 15:19:29,297Z lrauvNc4ToNetcdf.py nudge_coords():724   16:        0.345    0.0025645    0.0003722      3681     26.00          -1.28           2.65 2018-08-23 23:03:18.444610119
INFO 2020-11-12 15:19:29,302Z lrauvNc4ToNetcdf.py nudge_coords():724   17:        0.347   -0.0005472    0.0016287      1298      8.89         -16.37          33.95 2018-08-23 23:12:12.190565109
INFO 2020-11-12 15:19:29,306Z lrauvNc4ToNetcdf.py nudge_coords():724   18:        0.365    0.0017368   -0.0005772      1256      8.52           6.06         -12.55 2018-08-23 23:20:44.030152082
INFO 2020-11-12 15:19:29,311Z lrauvNc4ToNetcdf.py nudge_coords():724   19:        0.350    0.0006582    0.0000417      1057      7.15          -0.52           1.08 2018-08-23 23:27:53.731478930
INFO 2020-11-12 15:19:29,315Z lrauvNc4ToNetcdf.py nudge_coords():754   21:            -            -            -        25      0.20              -              -
INFO 2020-11-12 15:19:29,315Z lrauvNc4ToNetcdf.py nudge_coords():758 Points in final series = 25625
INFO 2020-11-12 15:19:29,353Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():550 http://odss.mbari.org/trackingdb/position/makai_ac/between/20180823T191710/20180824T002806/data.csv
INFO 2020-11-12 15:19:29,407Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():573 Found 0 position values from the Tracking database
INFO 2020-11-12 15:19:29,410Z lrauvNc4ToNetcdf.py processResampleNc4File():1190 ['oxygen', 'salinity', 'temperature', 'PAR', 'chlorophyll', 'chl', 'bbp470', 'bbp650', 'health_platform_battery_charge', 'health_platform_average_voltage', 'fix_time', 'fix_latitude', 'fix_longitude', 'control_inputs_buoyancy_position', 'control_inputs_elevator_angle', 'control_inputs_mass_position', 'control_inputs_rudder_angle', 'control_inputs_propeller_rotation_rate', 'pose_longitude_DeadReckonUsingSpeedCalculator', 'pose_latitude_DeadReckonUsingSpeedCalculator', 'pose_depth_DeadReckonUsingSpeedCalculator', 'pitch', 'roll', 'yaw', 'latitude', 'longitude', 'depth', 'time']
INFO 2020-11-12 15:19:29,877Z lrauvNc4ToNetcdf.py processResampleNc4File():1193 Wrote /mbari/LRAUV/makai/missionlogs/2018/20180823_20180827/20180823T201709/201808232017_201808232328_2S_scieng.nc