INFO 2020-11-12 15:19:10,223Z lrauvNc4ToNetcdf.py processResampleNc4File():1043 Reading /mbari/LRAUV/makai/missionlogs/2018/20180823_20180827/20180823T192938/201808231929_201808232017.nc4 file...
INFO 2020-11-12 15:19:10,224Z lrauvNc4ToNetcdf.py processResampleNc4File():1044 After copying to /tmp/201808231929_201808232017.nc4
INFO 2020-11-12 15:19:11,250Z lrauvNc4ToNetcdf.py processResampleNc4File():1046 Read file /mbari/LRAUV/makai/missionlogs/2018/20180823_20180827/20180823T192938/201808231929_201808232017.nc4
INFO 2020-11-12 15:19:11,276Z lrauvNc4ToNetcdf.py createSeries():241 latitude :   16 v_t values found before 2018-08-23 19:29:00 and after 2018-08-23 20:17:00
INFO 2020-11-12 15:19:11,415Z lrauvNc4ToNetcdf.py createSeries():241 longitude:   16 v_t values found before 2018-08-23 19:29:00 and after 2018-08-23 20:17:00
INFO 2020-11-12 15:19:11,552Z lrauvNc4ToNetcdf.py createSeries():241 depth    :   16 v_t values found before 2018-08-23 19:29:00 and after 2018-08-23 20:17:00
INFO 2020-11-12 15:19:11,690Z lrauvNc4ToNetcdf.py createSeries():241 time     :   16 v_t values found before 2018-08-23 19:29:00 and after 2018-08-23 20:17:00
INFO 2020-11-12 15:19:11,827Z lrauvNc4ToNetcdf.py createSeries():241 latitude :   16 v_t values found before 2018-08-23 19:29:00 and after 2018-08-23 20:17:00
INFO 2020-11-12 15:19:11,964Z lrauvNc4ToNetcdf.py createSeries():241 longitude:   16 v_t values found before 2018-08-23 19:29:00 and after 2018-08-23 20:17:00
INFO 2020-11-12 15:19:12,099Z lrauvNc4ToNetcdf.py createSeries():241 depth    :   16 v_t values found before 2018-08-23 19:29:00 and after 2018-08-23 20:17:00
INFO 2020-11-12 15:19:12,235Z lrauvNc4ToNetcdf.py createSeries():241 time     :   16 v_t values found before 2018-08-23 19:29:00 and after 2018-08-23 20:17:00
INFO 2020-11-12 15:19:12,370Z lrauvNc4ToNetcdf.py createSeries():241 latitude :   16 v_t values found before 2018-08-23 19:29:00 and after 2018-08-23 20:17:00
INFO 2020-11-12 15:19:12,507Z lrauvNc4ToNetcdf.py createSeries():241 longitude:   16 v_t values found before 2018-08-23 19:29:00 and after 2018-08-23 20:17:00
INFO 2020-11-12 15:19:12,644Z lrauvNc4ToNetcdf.py createSeries():241 depth    :   16 v_t values found before 2018-08-23 19:29:00 and after 2018-08-23 20:17:00
INFO 2020-11-12 15:19:12,779Z lrauvNc4ToNetcdf.py createSeries():241 time     :   16 v_t values found before 2018-08-23 19:29:00 and after 2018-08-23 20:17:00
INFO 2020-11-12 15:19:12,915Z lrauvNc4ToNetcdf.py createSeries():241 latitude :   16 v_t values found before 2018-08-23 19:29:00 and after 2018-08-23 20:17:00
INFO 2020-11-12 15:19:13,051Z lrauvNc4ToNetcdf.py createSeries():241 longitude:   16 v_t values found before 2018-08-23 19:29:00 and after 2018-08-23 20:17:00
INFO 2020-11-12 15:19:13,187Z lrauvNc4ToNetcdf.py createSeries():241 depth    :   16 v_t values found before 2018-08-23 19:29:00 and after 2018-08-23 20:17:00
INFO 2020-11-12 15:19:13,322Z lrauvNc4ToNetcdf.py createSeries():241 time     :   16 v_t values found before 2018-08-23 19:29:00 and after 2018-08-23 20:17:00
INFO 2020-11-12 15:19:13,440Z lrauvNc4ToNetcdf.py processResampleNc4File():1059 Creating t variable of the time indexes
INFO 2020-11-12 15:19:13,498Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group Aanderaa_O2 parameter mass_concentration_of_oxygen_in_sea_water renaming to oxygen
INFO 2020-11-12 15:19:13,548Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group CTD_Seabird parameter sea_water_salinity renaming to salinity
INFO 2020-11-12 15:19:13,599Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group CTD_Seabird parameter sea_water_temperature renaming to temperature
INFO 2020-11-12 15:19:13,601Z lrauvNc4ToNetcdf.py processResampleNc4File():1097 Variable bin_median_sea_water_salinity empty so skipping
INFO 2020-11-12 15:19:13,603Z lrauvNc4ToNetcdf.py processResampleNc4File():1097 Variable bin_median_sea_water_temperature empty so skipping
INFO 2020-11-12 15:19:13,605Z lrauvNc4ToNetcdf.py createSeries():241 downwelling_photosynthetic_photon_flux_in_sea_water:   16 v_t values found before 2018-08-23 19:29:00 and after 2018-08-23 20:17:00
INFO 2020-11-12 15:19:13,690Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group PAR_Licor parameter downwelling_photosynthetic_photon_flux_in_sea_water renaming to PAR
INFO 2020-11-12 15:19:13,787Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group WetLabsBB2FL parameter mass_concentration_of_chlorophyll_in_sea_water renaming to chlorophyll
INFO 2020-11-12 15:19:13,882Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group WetLabsBB2FL parameter OutputChl renaming to chl
INFO 2020-11-12 15:19:13,977Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group WetLabsBB2FL parameter Output470 renaming to bbp470
INFO 2020-11-12 15:19:14,073Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group WetLabsBB2FL parameter Output650 renaming to bbp650
INFO 2020-11-12 15:19:14,087Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group WetLabsBB2FL parameter bin_mean_mass_concentration_of_chlorophyll_in_sea_water renaming to chlorophyll
INFO 2020-11-12 15:19:14,101Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group WetLabsBB2FL parameter bin_median_mass_concentration_of_chlorophyll_in_sea_water renaming to chlorophyll
INFO 2020-11-12 15:19:14,107Z lrauvNc4ToNetcdf.py createSeries():241 platform_battery_charge:    1 v_t values found before 2018-08-23 19:29:00 and after 2018-08-23 20:17:00
INFO 2020-11-12 15:19:14,119Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group BPC1 parameter platform_battery_charge renaming to health_platform_battery_charge
INFO 2020-11-12 15:19:14,124Z lrauvNc4ToNetcdf.py createSeries():241 platform_battery_voltage:    1 v_t values found before 2018-08-23 19:29:00 and after 2018-08-23 20:17:00
INFO 2020-11-12 15:19:14,136Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group BPC1 parameter platform_battery_voltage renaming to health_platform_average_voltage
INFO 2020-11-12 15:19:14,142Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group NAL9602 parameter time_fix renaming to fix_time
INFO 2020-11-12 15:19:14,147Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group NAL9602 parameter latitude_fix renaming to fix_latitude
INFO 2020-11-12 15:19:14,152Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group NAL9602 parameter longitude_fix renaming to fix_longitude
INFO 2020-11-12 15:19:14,169Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group BuoyancyServo parameter platform_buoyancy_position renaming to control_inputs_buoyancy_position
INFO 2020-11-12 15:19:14,236Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group ElevatorServo parameter platform_elevator_angle renaming to control_inputs_elevator_angle
INFO 2020-11-12 15:19:14,241Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group MassServo parameter platform_mass_position renaming to control_inputs_mass_position
INFO 2020-11-12 15:19:14,244Z lrauvNc4ToNetcdf.py processResampleNc4File():1097 Variable platform_rudder_angle empty so skipping
INFO 2020-11-12 15:19:14,336Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group ThrusterServo parameter platform_propeller_rotation_rate renaming to control_inputs_propeller_rotation_rate
INFO 2020-11-12 15:19:14,341Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group DeadReckonUsingSpeedCalculator parameter fix_residual_percent_distance_traveled renaming to fix_residual_percent_distance_traveled_DeadReckonUsingSpeedCalculator
INFO 2020-11-12 15:19:14,343Z lrauvNc4ToNetcdf.py createSeries():241 longitude:   16 v_t values found before 2018-08-23 19:29:00 and after 2018-08-23 20:17:00
INFO 2020-11-12 15:19:14,430Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group DeadReckonUsingSpeedCalculator parameter longitude renaming to pose_longitude_DeadReckonUsingSpeedCalculator
INFO 2020-11-12 15:19:14,432Z lrauvNc4ToNetcdf.py createSeries():241 latitude :   16 v_t values found before 2018-08-23 19:29:00 and after 2018-08-23 20:17:00
INFO 2020-11-12 15:19:14,519Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group DeadReckonUsingSpeedCalculator parameter latitude renaming to pose_latitude_DeadReckonUsingSpeedCalculator
INFO 2020-11-12 15:19:14,521Z lrauvNc4ToNetcdf.py createSeries():241 depth    :   16 v_t values found before 2018-08-23 19:29:00 and after 2018-08-23 20:17:00
INFO 2020-11-12 15:19:14,609Z lrauvNc4ToNetcdf.py processResampleNc4File():1134 Found in group DeadReckonUsingSpeedCalculator parameter depth renaming to pose_depth_DeadReckonUsingSpeedCalculator
INFO 2020-11-12 15:19:14,633Z lrauvNc4ToNetcdf.py createSeries():241 platform_pitch_angle:   15 v_t values found before 2018-08-23 19:29:00 and after 2018-08-23 20:17:00
INFO 2020-11-12 15:19:14,758Z lrauvNc4ToNetcdf.py createNav():506 platform_pitch_angle -> pitch: {'units': 'n/a', 'standard_name': 'platform_pitch_angle', 'coordinates': 'time depth latitude longitude'}
INFO 2020-11-12 15:19:14,782Z lrauvNc4ToNetcdf.py createSeries():241 platform_roll_angle:   15 v_t values found before 2018-08-23 19:29:00 and after 2018-08-23 20:17:00
INFO 2020-11-12 15:19:14,906Z lrauvNc4ToNetcdf.py createNav():506 platform_roll_angle -> roll: {'units': 'rad', 'standard_name': 'platform_roll_angle', 'coordinates': 'time depth latitude longitude'}
INFO 2020-11-12 15:19:14,929Z lrauvNc4ToNetcdf.py createSeries():241 platform_orientation:   15 v_t values found before 2018-08-23 19:29:00 and after 2018-08-23 20:17:00
INFO 2020-11-12 15:19:15,057Z lrauvNc4ToNetcdf.py createNav():506 platform_orientation -> yaw: {'units': 'n/a', 'standard_name': 'platform_yaw_angle', 'coordinates': 'time depth latitude longitude'}
INFO 2020-11-12 15:19:15,057Z lrauvNc4ToNetcdf.py nudge_coords():651 /mbari/LRAUV/makai/missionlogs/2018/20180823_20180827/20180823T192938/201808231929_201808232017.nc4
INFO 2020-11-12 15:19:15,424Z lrauvNc4ToNetcdf.py nudge_coords():674 seg#  end_sec_diff end_lon_diff end_lat_diff len(segi)   seg_min u_drift (cm/s) v_drift (cm/s)     start datetime of segment
INFO 2020-11-12 15:19:15,425Z lrauvNc4ToNetcdf.py nudge_coords():691                  -            -            -         0      0.00              -              -                             -
INFO 2020-11-12 15:19:15,426Z lrauvNc4ToNetcdf.py nudge_coords():724    0:        0.338    0.0000128    0.0000222       249      2.50          -0.78           1.64 2018-08-23 19:36:02.250236988
INFO 2020-11-12 15:19:15,431Z lrauvNc4ToNetcdf.py nudge_coords():724    1:        0.348   -0.0011013    0.0004939      1799     12.00          -3.66           7.63 2018-08-23 19:48:02.437779903
INFO 2020-11-12 15:19:15,435Z lrauvNc4ToNetcdf.py nudge_coords():724    2:        0.342    0.0001805   -0.0000228       330      2.79           0.73          -1.52 2018-08-23 19:50:50.478204012
INFO 2020-11-12 15:19:15,440Z lrauvNc4ToNetcdf.py nudge_coords():724    3:        0.344   -0.0007563    0.0005070      1609     10.81          -4.20           8.69 2018-08-23 20:01:39.500674009
INFO 2020-11-12 15:19:15,444Z lrauvNc4ToNetcdf.py nudge_coords():724    4:        0.332    0.0000457   -0.0000612       136      1.28           4.28          -8.86 2018-08-23 20:02:56.688991070
INFO 2020-11-12 15:19:15,448Z lrauvNc4ToNetcdf.py nudge_coords():724    5:        0.355   -0.0003959    0.0006030      1849     12.40          -4.39           9.01 2018-08-23 20:15:21.218487024
INFO 2020-11-12 15:19:15,453Z lrauvNc4ToNetcdf.py nudge_coords():754    7:            -            -            -       243      1.80              -              -
INFO 2020-11-12 15:19:15,453Z lrauvNc4ToNetcdf.py nudge_coords():758 Points in final series = 6215
INFO 2020-11-12 15:19:15,476Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():550 http://odss.mbari.org/trackingdb/position/makai_ac/between/20180823T182938/20180823T211709/data.csv
INFO 2020-11-12 15:19:15,520Z lrauvNc4ToNetcdf.py trackingdb_lat_lon():573 Found 0 position values from the Tracking database
INFO 2020-11-12 15:19:15,523Z lrauvNc4ToNetcdf.py processResampleNc4File():1190 ['oxygen', 'salinity', 'temperature', 'PAR', 'chlorophyll', 'chl', 'bbp470', 'bbp650', 'health_platform_battery_charge', 'health_platform_average_voltage', 'fix_time', 'fix_latitude', 'fix_longitude', 'control_inputs_buoyancy_position', 'control_inputs_elevator_angle', 'control_inputs_mass_position', 'control_inputs_propeller_rotation_rate', 'fix_residual_percent_distance_traveled_DeadReckonUsingSpeedCalculator', 'pose_longitude_DeadReckonUsingSpeedCalculator', 'pose_latitude_DeadReckonUsingSpeedCalculator', 'pose_depth_DeadReckonUsingSpeedCalculator', 'pitch', 'roll', 'yaw', 'latitude', 'longitude', 'depth', 'time']
INFO 2020-11-12 15:19:15,861Z lrauvNc4ToNetcdf.py processResampleNc4File():1193 Wrote /mbari/LRAUV/makai/missionlogs/2018/20180823_20180827/20180823T192938/201808231929_201808232017_2S_scieng.nc