INFO 2025-10-21 21:41:52,852 process.py process_mission():429 [1] commandline = /src/data/process_i2map.py -v --noinput --start_year 2025 --end_year 2025 --start_yd 1 --end_yd 365 --num_cores 1 --clobber INFO 2025-10-21 21:41:52,852 process.py process_mission():449 [1] Processing i2map mission 2025.190.01 by user docker_user on host db3cf4b524d0 INFO 2025-10-21 21:41:52,852 process.py download_process():165 [1] Download and processing steps for 2025.190.01 INFO 2025-10-21 21:41:52,852 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/M3/master/i2MAP/2025/07/20250709/2025.190.01 INFO 2025-10-21 21:41:52,853 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/M3/master/i2MAP/2025/07/20250709/2025.190.01 to /data/auv_data/i2map/missionlogs/2025.190.01 INFO 2025-10-21 21:41:55,389 logs2netcdfs.py download_process_logs():779 [1] Processing mission: i2map 2025.190.01 INFO 2025-10-21 21:41:55,390 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/i2map/missionlogs/2025.190.01/gps.log (843548 bytes) INFO 2025-10-21 21:41:55,491 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/i2map/missionlogs/2025.190.01/navigation.log (182877380 bytes) INFO 2025-10-21 21:42:10,409 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/i2map/missionlogs/2025.190.01/parosci.log (45048710 bytes) INFO 2025-10-21 21:42:14,058 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/i2map/missionlogs/2025.190.01/parosci.log: [781996] INFO 2025-10-21 21:42:14,186 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/i2map/missionlogs/2025.190.01/seabird25p.log (90430570 bytes) INFO 2025-10-21 21:42:21,258 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/i2map/missionlogs/2025.190.01/seabird25p.log: [1] INFO 2025-10-21 21:42:21,587 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/i2map/missionlogs/2025.190.01/tailCone.log (22634679 bytes) INFO 2025-10-21 21:42:24,448 logs2netcdfs.py download_process_logs():807 [1] Time to process: 29.04 seconds INFO 2025-10-21 21:42:24,449 process.py calibrate():227 [1] Calibration steps for 2025.190.01 INFO 2025-10-21 21:42:24,955 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-10-21 21:42:24,957 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-10-21 21:42:26,379 calibrate.py _nudge_pos():1806 [1] 170: 0.060 -0.0006058 -0.0032802 36696 122.32 -0.736 -4.969 2025-07-09T18:19:52.600824064 INFO 2025-10-21 21:42:26,538 calibrate.py _nudge_pos():1806 [1] 185: 0.100 0.0001611 -0.0002040 2440 8.13 2.944 -4.650 2025-07-09T18:28:14.606434304 INFO 2025-10-21 21:42:27,194 calibrate.py _nudge_pos():1806 [1] 248: 0.120 0.0011217 0.0004425 40762 135.87 1.227 0.603 2025-07-09T20:45:09.203695872 INFO 2025-10-21 21:42:28,071 calibrate.py _nudge_pos():1806 [1] 326: 0.130 0.0000433 -0.0000921 3065 10.21 0.631 -1.672 2025-07-09T20:56:39.206427392 INFO 2025-10-21 21:42:28,693 calibrate.py _nudge_pos():1806 [1] 380: 0.200 0.0001191 -0.0002276 2130 7.10 2.492 -5.942 2025-07-09T21:04:38.203613696 INFO 2025-10-21 21:42:30,200 calibrate.py _nudge_pos():1806 [1] 515: 0.030 0.0001700 -0.0002899 2146 7.15 3.532 -7.512 2025-07-09T21:14:01.405031936 INFO 2025-10-21 21:42:30,946 calibrate.py _nudge_pos():1806 [1] 585: 0.150 0.0018844 0.0010915 35557 118.52 2.362 1.707 2025-07-09T23:13:41.803140864 INFO 2025-10-21 21:42:31,003 calibrate.py _nudge_pos():1806 [1] 590: 0.180 0.0007498 -0.0001120 2515 8.38 13.294 -2.477 2025-07-09T23:22:08.808408832 INFO 2025-10-21 21:42:31,526 calibrate.py _nudge_pos():1806 [1] 638: 0.190 0.0003401 -0.0014024 40658 135.52 0.373 -1.917 2025-07-10T01:38:28.408067584 INFO 2025-10-21 21:42:32,318 calibrate.py _nudge_pos():1806 [1] 709: 0.030 0.0004424 0.0000554 3606 12.02 5.469 0.855 2025-07-10T01:51:40.603798528 INFO 2025-10-21 21:42:33,097 calibrate.py _nudge_pos():1806 [1] 779: 0.070 0.0007809 -0.0000996 2030 6.76 17.155 -2.728 2025-07-10T01:59:35.601259008 INFO 2025-10-21 21:42:33,696 calibrate.py _nudge_pos():1806 [1] 832: 0.110 0.0003613 -0.0002469 2000 6.66 8.056 -6.866 2025-07-10T02:07:07.600295168 INFO 2025-10-21 21:42:35,149 calibrate.py _nudge_pos():1806 [1] 956: 0.170 -0.0011540 0.0006390 18571 61.90 -2.770 1.913 2025-07-10T03:11:04.807428352 INFO 2025-10-21 21:42:35,693 calibrate.py _nudge_pos():1806 [1] 1004: 0.180 0.0008375 0.0005525 14306 47.68 2.610 2.147 2025-07-10T03:59:33.008203008 INFO 2025-10-21 21:42:36,405 calibrate.py _nudge_pos():1806 [1] 1068: 0.190 -0.0000566 -0.0001573 325 1.08 -7.790 -26.995 2025-07-10T04:01:41.009434112 INFO 2025-10-21 21:42:36,527 calibrate.py _nudge_pos():1806 [1] 1079: 0.170 0.0000165 -0.0000219 20 0.06 38.629 -64.083 2025-07-10T04:01:55.008475392 INFO 2025-10-21 21:42:36,539 calibrate.py _nudge_pos():1806 [1] 1080: 0.080 -0.0000266 0.0003790 5366 17.88 -0.221 3.927 2025-07-10T04:19:48.204956416 INFO 2025-10-21 21:42:37,712 calibrate.py _nudge_pos():1806 [1] 1184: 0.110 -0.0000570 -0.0001351 315 1.05 -8.088 -23.923 2025-07-10T04:22:35.203515904 INFO 2025-10-21 21:42:37,850 calibrate.py _nudge_pos():1806 [1] 1196: 0.110 -0.0000088 -0.0002607 1010 3.36 -0.387 -14.360 2025-07-10T04:26:08.208924416 INFO 2025-10-21 21:42:38,844 calibrate.py _nudge_pos():1806 [1] 1284: 0.150 -0.0000177 -0.0002201 1155 3.85 -0.685 -10.600 2025-07-10T04:31:26.207139840 INFO 2025-10-21 21:42:39,597 calibrate.py _nudge_pos():1806 [1] 1350: 0.140 0.0003039 -0.0000350 1760 5.86 7.699 -1.107 2025-07-10T04:38:23.208573440 INFO 2025-10-21 21:42:40,878 calibrate.py _nudge_pos():1806 [1] 1464: 0.190 0.0000555 -0.0002286 1405 4.68 1.763 -9.053 2025-07-10T04:44:57.201582848 INFO 2025-10-21 21:43:20,143 calibrate.py _nudge_pos():1806 [1] 4761: 0.080 0.0006673 0.0003504 5940 19.80 5.008 3.279 2025-07-10T05:59:42.604311808 INFO 2025-10-21 21:43:20,740 calibrate.py _nudge_pos():1806 [1] 4812: 0.150 0.0001165 -0.0003282 2390 7.96 2.174 -7.637 2025-07-10T06:08:30.608141056 INFO 2025-10-21 21:43:22,052 calibrate.py _nudge_pos():1806 [1] 4924: 0.070 0.0026310 0.0004592 35502 118.34 3.303 0.719 2025-07-10T08:08:42.204112896 INFO 2025-10-21 21:43:22,318 calibrate.py _nudge_pos():1806 [1] 4946: 0.100 0.0001251 -0.0001557 2340 7.80 2.384 -3.701 2025-07-10T08:16:52.200545792 INFO 2025-10-21 21:43:23,378 calibrate.py _nudge_pos():1806 [1] 5036: 0.100 0.0040444 0.0002255 40497 134.99 4.451 0.310 2025-07-10T10:33:20.809587712 INFO 2025-10-21 21:43:23,393 calibrate.py _nudge_pos():1806 [1] 5037: 0.070 0.0000575 -0.0000310 35 0.11 75.350 -50.624 2025-07-10T10:33:27.809108224 INFO 2025-10-21 21:43:31,103 calibrate.py _nudge_pos():1806 [1] 5684: 0.140 0.0007999 -0.0029457 13936 46.45 2.558 -11.751 2025-07-10T11:30:41.003918080 INFO 2025-10-21 21:43:35,331 calibrate.py _nudge_pos():1806 [1] 6040: 0.170 0.0027630 -0.0019863 13992 46.64 8.800 -7.892 2025-07-10T12:23:14.407895296 INFO 2025-10-21 21:43:39,560 calibrate.py _nudge_pos():1806 [1] 6394: 0.190 0.0016454 -0.0015034 13945 46.48 5.257 -5.994 2025-07-10T13:15:37.402585344 INFO 2025-10-21 21:43:39,680 calibrate.py _nudge_pos():1806 [1] 6404: 0.020 0.0000085 0.0000062 111 0.37 3.453 3.128 2025-07-10T13:16:08.600448256 INFO 2025-10-21 21:43:43,727 calibrate.py _nudge_pos():1806 [1] 6743: 0.020 0.0017458 -0.0025501 13951 46.50 5.575 -10.162 2025-07-10T14:08:16.806151424 INFO 2025-10-21 21:43:48,018 calibrate.py _nudge_pos():1806 [1] 7101: 0.050 0.0000085 -0.0015270 13981 46.60 0.027 -6.072 2025-07-10T15:00:50.000142848 INFO 2025-10-21 21:43:48,067 calibrate.py _nudge_pos():1806 [1] 7105: 0.020 -0.0000262 0.0000333 15 0.05 -83.410 132.345 2025-07-10T15:00:57.009662720 INFO 2025-10-21 21:43:52,429 calibrate.py _nudge_pos():1806 [1] 7463: 0.060 0.0026922 -0.0013495 13955 46.52 8.590 -5.376 2025-07-10T15:53:25.203996416 INFO 2025-10-21 21:44:00,434 calibrate.py _nudge_pos():1806 [1] 8110: 0.120 0.0039274 -0.0018960 13976 46.58 12.511 -7.542 2025-07-10T16:50:46.408258048 INFO 2025-10-21 21:44:15,926 calibrate.py _nudge_pos():1806 [1] 9373: 0.130 0.0014874 -0.0008152 8705 29.01 7.606 -5.206 2025-07-10T17:40:49.602524928 INFO 2025-10-21 21:44:31,689 calibrate.py _nudge_pos():1806 [1] 10638: 0.080 0.0000461 -0.0001693 2105 7.01 0.975 -4.472 2025-07-10T18:08:54.807080448 INFO 2025-10-21 21:44:44,755 calibrate.py _nudge_pos():1862 [1] 11654: - - - 5 0.01 - - INFO 2025-10-21 21:44:44,755 calibrate.py _nudge_pos():1868 [1] Points in final series = 470671 INFO 2025-10-21 21:45:44,005 calibrate.py _read_oxy_coeffs():1189 [1] Looking for calibration file for O2 sensor serial number 103 on port side INFO 2025-10-21 21:45:44,007 calibrate.py _read_oxy_coeffs():1219 [1] Executing: find "/Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files" -name "103" INFO 2025-10-21 21:45:44,237 calibrate.py _read_oxy_coeffs():1238 [1] Found calibration date dirs: 2010-2008 2011_Feb 2012_Feb 2013_Apr 2013_Aug 2014_Sep 2015_Aug 2019_Oct 2021_Apr 2024_Jun WARNING 2025-10-21 21:45:44,242 calibrate.py _cal_date_xml_files():1081 [1] Found 17 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/103/2010-2008 INFO 2025-10-21 21:45:44,242 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-21 21:45:44,243 calibrate.py _cal_date_xml_files():1116 [1] Cannot parse CalibrationDate, 16-Feb-11p INFO 2025-10-21 21:45:44,243 calibrate.py _cal_date_xml_files():1123 [1] Trying to parse CalibrationDate without 'p' WARNING 2025-10-21 21:45:44,249 calibrate.py _cal_date_xml_files():1081 [1] Found 14 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/103/2011_Feb INFO 2025-10-21 21:45:44,249 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-21 21:45:44,250 calibrate.py _cal_date_xml_files():1116 [1] Cannot parse CalibrationDate, 16-Feb-11p INFO 2025-10-21 21:45:44,250 calibrate.py _cal_date_xml_files():1123 [1] Trying to parse CalibrationDate without 'p' WARNING 2025-10-21 21:45:44,255 calibrate.py _cal_date_xml_files():1081 [1] Found 14 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/103/2012_Feb INFO 2025-10-21 21:45:44,255 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-21 21:45:44,256 calibrate.py _cal_date_xml_files():1116 [1] Cannot parse CalibrationDate, 16-Feb-11p INFO 2025-10-21 21:45:44,256 calibrate.py _cal_date_xml_files():1123 [1] Trying to parse CalibrationDate without 'p' WARNING 2025-10-21 21:45:44,262 calibrate.py _cal_date_xml_files():1081 [1] Found 14 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/103/2013_Apr INFO 2025-10-21 21:45:44,262 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-21 21:45:44,263 calibrate.py _cal_date_xml_files():1116 [1] Cannot parse CalibrationDate, 16-Feb-11p INFO 2025-10-21 21:45:44,263 calibrate.py _cal_date_xml_files():1123 [1] Trying to parse CalibrationDate without 'p' WARNING 2025-10-21 21:45:44,268 calibrate.py _cal_date_xml_files():1081 [1] Found 14 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/103/2013_Aug INFO 2025-10-21 21:45:44,268 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-21 21:45:44,269 calibrate.py _cal_date_xml_files():1116 [1] Cannot parse CalibrationDate, 16-Feb-11p INFO 2025-10-21 21:45:44,269 calibrate.py _cal_date_xml_files():1123 [1] Trying to parse CalibrationDate without 'p' WARNING 2025-10-21 21:45:44,274 calibrate.py _cal_date_xml_files():1081 [1] Found 14 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/103/2014_Sep INFO 2025-10-21 21:45:44,275 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-21 21:45:44,275 calibrate.py _cal_date_xml_files():1116 [1] Cannot parse CalibrationDate, 16-Feb-11p INFO 2025-10-21 21:45:44,275 calibrate.py _cal_date_xml_files():1123 [1] Trying to parse CalibrationDate without 'p' WARNING 2025-10-21 21:45:44,280 calibrate.py _cal_date_xml_files():1081 [1] Found 14 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/103/2015_Aug INFO 2025-10-21 21:45:44,280 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-21 21:45:44,281 calibrate.py _cal_date_xml_files():1116 [1] Cannot parse CalibrationDate, 16-Feb-11p INFO 2025-10-21 21:45:44,281 calibrate.py _cal_date_xml_files():1123 [1] Trying to parse CalibrationDate without 'p' WARNING 2025-10-21 21:45:44,286 calibrate.py _cal_date_xml_files():1081 [1] Found 14 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/103/2019_Oct INFO 2025-10-21 21:45:44,286 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-21 21:45:44,287 calibrate.py _cal_date_xml_files():1116 [1] Cannot parse CalibrationDate, 16-Feb-11p INFO 2025-10-21 21:45:44,287 calibrate.py _cal_date_xml_files():1123 [1] Trying to parse CalibrationDate without 'p' WARNING 2025-10-21 21:45:44,293 calibrate.py _cal_date_xml_files():1081 [1] Found 14 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/103/2021_Apr INFO 2025-10-21 21:45:44,293 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-21 21:45:44,294 calibrate.py _cal_date_xml_files():1116 [1] Cannot parse CalibrationDate, 16-Feb-11p INFO 2025-10-21 21:45:44,294 calibrate.py _cal_date_xml_files():1123 [1] Trying to parse CalibrationDate without 'p' WARNING 2025-10-21 21:45:44,299 calibrate.py _cal_date_xml_files():1081 [1] Found 14 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/103/2024_Jun INFO 2025-10-21 21:45:44,299 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-21 21:45:44,300 calibrate.py _cal_date_xml_files():1116 [1] Cannot parse CalibrationDate, 16-Feb-11p INFO 2025-10-21 21:45:44,300 calibrate.py _cal_date_xml_files():1123 [1] Trying to parse CalibrationDate without 'p' INFO 2025-10-21 21:45:44,306 calibrate.py _read_oxy_coeffs():1247 [1] File /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/103/2011_Feb/Oxygen_SBE43_0103.XML has CalibrationDate 2011-02-16 00:00:00+00:00 INFO 2025-10-21 21:45:44,306 calibrate.py _read_oxy_coeffs():1263 [1] File /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/103/2011_Feb/Oxygen_SBE43_0103.XML is just before 2025.190.01 with mission_start=2025-07-09T16:15:37.671521536 INFO 2025-10-21 21:45:57,925 calibrate.py _calibrated_oxygen():2513 [1] dissolvedO2_port: parsed from /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/103/2011_Feb/Oxygen_SBE43_0103.XML file: {'Soc': 0.4598, 'offset': -0.539, 'A': -0.0030238, 'B': 0.00015619, 'C': -2.652e-06, 'D0': 2.5826, 'D1': 0.00019263, 'D2': -0.04648, 'E': 0.036, 'Tau20': 1.83, 'H1': -0.033, 'H2': 5000.0, 'H3': 1450.0} INFO 2025-10-21 21:45:57,935 calibrate.py _read_oxy_coeffs():1189 [1] Looking for calibration file for O2 sensor serial number 143 on stbd side INFO 2025-10-21 21:45:57,936 calibrate.py _read_oxy_coeffs():1219 [1] Executing: find "/Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files" -name "143" INFO 2025-10-21 21:45:58,111 calibrate.py _read_oxy_coeffs():1238 [1] Found calibration date dirs: 2011_June 2012_Oct 2013-Dec 2013_July 2015-Oct 2017_Mar 2020_Feb 2023_Jan 2024_Jan WARNING 2025-10-21 21:45:58,117 calibrate.py _cal_date_xml_files():1081 [1] Found 11 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/143/2011_June INFO 2025-10-21 21:45:58,117 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-21 21:45:58,122 calibrate.py _cal_date_xml_files():1081 [1] Found 11 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/143/2012_Oct INFO 2025-10-21 21:45:58,122 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-21 21:45:58,127 calibrate.py _cal_date_xml_files():1081 [1] Found 11 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/143/2013-Dec INFO 2025-10-21 21:45:58,127 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-21 21:45:58,133 calibrate.py _cal_date_xml_files():1081 [1] Found 11 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/143/2013_July INFO 2025-10-21 21:45:58,133 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-21 21:45:58,137 calibrate.py _cal_date_xml_files():1081 [1] Found 11 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/143/2015-Oct INFO 2025-10-21 21:45:58,137 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-21 21:45:58,143 calibrate.py _cal_date_xml_files():1081 [1] Found 11 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/143/2017_Mar INFO 2025-10-21 21:45:58,143 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-21 21:45:58,148 calibrate.py _cal_date_xml_files():1081 [1] Found 11 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/143/2020_Feb INFO 2025-10-21 21:45:58,148 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-21 21:45:58,153 calibrate.py _cal_date_xml_files():1081 [1] Found 11 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/143/2023_Jan INFO 2025-10-21 21:45:58,154 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-21 21:45:58,159 calibrate.py _cal_date_xml_files():1081 [1] Found 11 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/143/2024_Jan INFO 2025-10-21 21:45:58,159 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} INFO 2025-10-21 21:45:58,165 calibrate.py _read_oxy_coeffs():1247 [1] File /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/143/2013_July/Oxygen_SBE43_0143.XML has CalibrationDate 2013-07-17 00:00:00+00:00 INFO 2025-10-21 21:45:58,165 calibrate.py _read_oxy_coeffs():1263 [1] File /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/143/2013_July/Oxygen_SBE43_0143.XML is just before 2025.190.01 with mission_start=2025-07-09T16:15:37.671521536 INFO 2025-10-21 21:46:12,134 calibrate.py _calibrated_oxygen():2513 [1] dissolvedO2_stbd: parsed from /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/143/2013_July/Oxygen_SBE43_0143.XML file: {'Soc': 0.42815, 'offset': -0.4829, 'A': -0.0031081, 'B': 0.0001985, 'C': -3.3814e-06, 'D0': 2.5826, 'D1': 0.000192634, 'D2': -0.0464803, 'E': 0.036, 'Tau20': 1.28, 'H1': -0.033, 'H2': 5000.0, 'H3': 1450.0} INFO 2025-10-21 21:46:31,296 calibrate.py _geometric_depth_correction():3423 [1] seabird25p: d_beg_time_diff: 39 seconds, d_end_time_diff: -1 seconds INFO 2025-10-21 21:46:36,928 calibrate.py _geometric_depth_correction():3423 [1] seabird25p: d_beg_time_diff: 39 seconds, d_end_time_diff: -1 seconds INFO 2025-10-21 21:46:36,937 calibrate.py _ctd_process():2919 [1] Performing range checking of ['seabird25p_salinity'] in 2025.190.01/seabird25p.nc INFO 2025-10-21 21:46:36,941 calibrate.py _range_qc_combined_nc():898 [1] Setting 60 seabird25p_salinity values to NaN INFO 2025-10-21 21:46:36,941 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('seabird25p_salinity', Range(min=30, max=40))] INFO 2025-10-21 21:46:36,941 calibrate.py _range_qc_combined_nc():936 [1] Done range checking seabird25p INFO 2025-10-21 21:46:37,380 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/i2map/missionnetcdfs/2025.190.01/i2map_2025.190.01_cal.nc INFO 2025-10-21 21:47:31,209 calibrate.py write_netcdf():3512 [1] Data variables written: depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, seabird25p_beam_transmittance, seabird25p_conductivity, seabird25p_conductivity_onboard, seabird25p_depth, seabird25p_dissolvedO2_port, seabird25p_dissolvedO2_stbd, seabird25p_oxygen_mll_port, seabird25p_oxygen_mll_stbd, seabird25p_oxygen_umolkg_port, seabird25p_oxygen_umolkg_stbd, seabird25p_salinity, seabird25p_salinity_onboard, seabird25p_temperature, seabird25p_temperature_onboard, seabird25p_time, tailcone_propRpm, tailcone_time, time INFO 2025-10-21 21:47:31,213 process.py align():251 [1] Alignment steps for 2025.190.01 INFO 2025-10-21 21:47:31,257 align.py process_cal():139 [1] Processing i2map_2025.190.01_cal.nc from /data/auv_data/i2map/missionnetcdfs/2025.190.01 INFO 2025-10-21 21:47:31,378 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-10-21 21:47:31,389 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-10-21 21:47:31,686 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-10-21 21:47:31,702 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-10-21 21:47:31,994 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-10-21 21:47:32,010 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-10-21 21:47:32,183 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-10-21 21:47:32,183 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-10-21 21:47:32,306 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-10-21 21:47:32,322 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-10-21 21:47:32,640 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2025.190.01_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 21:47:32,667 align.py process_cal():249 [1] seabird25p_temperature: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 21:47:33,078 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2025.190.01_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 21:47:33,107 align.py process_cal():249 [1] seabird25p_conductivity: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 21:47:33,521 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2025.190.01_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 21:47:33,550 align.py process_cal():249 [1] seabird25p_salinity: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 21:47:33,960 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2025.190.01_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 21:47:33,987 align.py process_cal():249 [1] seabird25p_temperature_onboard: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 21:47:34,400 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2025.190.01_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 21:47:34,427 align.py process_cal():249 [1] seabird25p_conductivity_onboard: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 21:47:34,840 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2025.190.01_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 21:47:34,873 align.py process_cal():249 [1] seabird25p_salinity_onboard: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 21:47:35,288 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2025.190.01_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 21:47:35,314 align.py process_cal():249 [1] seabird25p_dissolvedO2_port: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 21:47:35,725 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2025.190.01_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 21:47:35,750 align.py process_cal():249 [1] seabird25p_oxygen_mll_port: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 21:47:36,161 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2025.190.01_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 21:47:36,186 align.py process_cal():249 [1] seabird25p_oxygen_umolkg_port: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 21:47:36,597 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2025.190.01_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 21:47:36,622 align.py process_cal():249 [1] seabird25p_dissolvedO2_stbd: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 21:47:37,034 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2025.190.01_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 21:47:37,065 align.py process_cal():249 [1] seabird25p_oxygen_mll_stbd: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 21:47:37,474 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2025.190.01_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 21:47:37,497 align.py process_cal():249 [1] seabird25p_oxygen_umolkg_stbd: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 21:47:37,908 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2025.190.01_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 21:47:37,931 align.py process_cal():249 [1] seabird25p_beam_transmittance: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 21:47:38,348 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2025.190.01_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 21:47:38,370 align.py process_cal():249 [1] seabird25p_depth: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 21:47:38,814 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 5.00 INFO 2025-10-21 21:47:39,003 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/i2map/missionnetcdfs/2025.190.01/i2map_2025.190.01_align.nc INFO 2025-10-21 21:47:39,176 align.py write_netcdf():342 [1] Data variables written: navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, seabird25p_beam_transmittance, seabird25p_conductivity, seabird25p_conductivity_onboard, seabird25p_depth, seabird25p_dissolvedO2_port, seabird25p_dissolvedO2_stbd, seabird25p_latitude, seabird25p_longitude, seabird25p_oxygen_mll_port, seabird25p_oxygen_mll_stbd, seabird25p_oxygen_umolkg_port, seabird25p_oxygen_umolkg_stbd, seabird25p_salinity, seabird25p_salinity_onboard, seabird25p_temperature, seabird25p_temperature_onboard, seabird25p_time, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-10-21 21:47:39,178 process.py resample():273 [1] Resampling steps for 2025.190.01 INFO 2025-10-21 21:47:39,178 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-10-21 21:47:39,207 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/i2map/missionnetcdfs/2025.190.01/i2map_2025.190.01_align.nc mission netCDF file INFO 2025-10-21 21:47:39,216 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/i2map/missionnetcdfs/2025.190.01/i2map_2025.190.01_align.nc mission netCDF file INFO 2025-10-21 21:47:39,219 resample.py get_mission_start_end():1145 [1] navigation: 2025-07-09T16:15:34.811717632 to 2025-07-10T18:26:40.804054784 (0 days 00:00:00 before mission_end) INFO 2025-10-21 21:47:39,223 resample.py get_mission_start_end():1145 [1] seabird25p: 2025-07-09T16:15:37.671521536 to 2025-07-10T18:26:40.704061440 (0 days 00:00:00.099993344 before mission_end) INFO 2025-10-21 21:47:39,228 resample.py get_mission_start_end():1145 [1] tailcone : 2025-07-09T16:14:51.374693120 to 2025-07-10T18:26:40.774056960 (0 days 00:00:00.029997824 before mission_end) INFO 2025-10-21 21:47:39,229 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/i2map/missionnetcdfs/2025.190.01/i2map_2025.190.01_align.nc mission netCDF file INFO 2025-10-21 21:47:39,230 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-10-21 21:47:40,453 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-10-21 21:47:40,599 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-10-21 21:47:40,738 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-10-21 21:47:40,874 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-10-21 21:47:41,082 resample.py resample_variable():1031 [1] Resampling seabird25p_temperature with frequency 1S following 3 point median filter INFO 2025-10-21 21:47:41,292 resample.py resample_variable():1031 [1] Resampling seabird25p_conductivity with frequency 1S following 3 point median filter INFO 2025-10-21 21:47:41,526 resample.py resample_variable():1031 [1] Resampling seabird25p_salinity with frequency 1S following 3 point median filter INFO 2025-10-21 21:47:41,737 resample.py resample_variable():1031 [1] Resampling seabird25p_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-10-21 21:47:41,949 resample.py resample_variable():1031 [1] Resampling seabird25p_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-10-21 21:47:42,161 resample.py resample_variable():1031 [1] Resampling seabird25p_salinity_onboard with frequency 1S following 3 point median filter INFO 2025-10-21 21:47:42,379 resample.py resample_variable():1031 [1] Resampling seabird25p_dissolvedO2_port with frequency 1S following 3 point median filter INFO 2025-10-21 21:47:42,591 resample.py resample_variable():1031 [1] Resampling seabird25p_oxygen_mll_port with frequency 1S following 3 point median filter INFO 2025-10-21 21:47:42,803 resample.py resample_variable():1031 [1] Resampling seabird25p_oxygen_umolkg_port with frequency 1S following 3 point median filter INFO 2025-10-21 21:47:43,014 resample.py resample_variable():1031 [1] Resampling seabird25p_dissolvedO2_stbd with frequency 1S following 3 point median filter INFO 2025-10-21 21:47:43,234 resample.py resample_variable():1031 [1] Resampling seabird25p_oxygen_mll_stbd with frequency 1S following 3 point median filter INFO 2025-10-21 21:47:43,460 resample.py resample_variable():1031 [1] Resampling seabird25p_oxygen_umolkg_stbd with frequency 1S following 3 point median filter INFO 2025-10-21 21:47:43,694 resample.py resample_variable():1031 [1] Resampling seabird25p_beam_transmittance with frequency 1S following 3 point median filter INFO 2025-10-21 21:47:43,837 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-10-21 21:47:44,414 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/i2map/missionnetcdfs/2025.190.01/i2map_2025.190.01_1S.nc INFO 2025-10-21 21:47:44,415 process.py archive():337 [1] Archiving steps for 2025.190.01 INFO 2025-10-21 21:47:44,415 process.py archive():347 [1] nc_file_base = /data/auv_data/i2map/missionnetcdfs/2025.190.01/i2map_2025.190.01, BASE_PATH = /data/auv_data INFO 2025-10-21 21:47:44,417 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/i2map/missionnetcdfs/2025.190.01/i2map_2025.190.01 files to /Volumes/AUVCTD/surveys/2025/netcdf INFO 2025-10-21 21:47:44,419 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2025/netcdf/i2map_2025.190.01_1S.nc INFO 2025-10-21 21:47:44,470 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2025.190.01/i2map_2025.190.01_1S.nc /Volumes/AUVCTD/surveys/2025/netcdf done. INFO 2025-10-21 21:47:44,471 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2025/netcdf/i2map_2025.190.01_cal.nc INFO 2025-10-21 21:47:44,889 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2025.190.01/i2map_2025.190.01_cal.nc /Volumes/AUVCTD/surveys/2025/netcdf done. INFO 2025-10-21 21:47:44,890 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2025/netcdf/i2map_2025.190.01_align.nc INFO 2025-10-21 21:47:45,230 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2025.190.01/i2map_2025.190.01_align.nc /Volumes/AUVCTD/surveys/2025/netcdf done. INFO 2025-10-21 21:47:45,242 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2025.190.01/gps.nc /Volumes/AUVCTD/missionnetcdfs/2025/2025190/2025.190.01 done. INFO 2025-10-21 21:47:45,683 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2025.190.01/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2025/2025190/2025.190.01 done. INFO 2025-10-21 21:47:45,834 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2025.190.01/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2025/2025190/2025.190.01 done. INFO 2025-10-21 21:47:46,090 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2025.190.01/seabird25p.nc /Volumes/AUVCTD/missionnetcdfs/2025/2025190/2025.190.01 done. INFO 2025-10-21 21:47:46,178 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2025.190.01/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2025/2025190/2025.190.01 done. INFO 2025-10-21 21:47:46,178 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-10-21 21:47:46,178 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2025.190.01/i2map_2025.190.01_processing.log /Volumes/AUVCTD/surveys/2025/netcdf