INFO 2025-10-21 21:33:52,163 process.py process_mission():429 [1] commandline = /src/data/process_i2map.py -v --noinput --start_year 2025 --end_year 2025 --start_yd 1 --end_yd 365 --num_cores 1 --clobber INFO 2025-10-21 21:33:52,164 process.py process_mission():449 [1] Processing i2map mission 2025.092.02 by user docker_user on host db3cf4b524d0 INFO 2025-10-21 21:33:52,164 process.py download_process():165 [1] Download and processing steps for 2025.092.02 INFO 2025-10-21 21:33:52,164 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/M3/master/i2MAP/2025/04/20250402/2025.092.02 INFO 2025-10-21 21:33:52,165 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/M3/master/i2MAP/2025/04/20250402/2025.092.02 to /data/auv_data/i2map/missionlogs/2025.092.02 INFO 2025-10-21 21:33:54,402 logs2netcdfs.py download_process_logs():779 [1] Processing mission: i2map 2025.092.02 INFO 2025-10-21 21:33:54,402 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/i2map/missionlogs/2025.092.02/gps.log (589388 bytes) INFO 2025-10-21 21:33:54,471 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/i2map/missionlogs/2025.092.02/navigation.log (161300700 bytes) INFO 2025-10-21 21:34:07,154 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/i2map/missionlogs/2025.092.02/parosci.log (39734486 bytes) INFO 2025-10-21 21:34:10,440 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/i2map/missionlogs/2025.092.02/seabird25p.log (79732930 bytes) INFO 2025-10-21 21:34:16,036 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/i2map/missionlogs/2025.092.02/seabird25p.log: [ 1 3 78508 400044] INFO 2025-10-21 21:34:16,327 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/i2map/missionlogs/2025.092.02/tailCone.log (19964439 bytes) INFO 2025-10-21 21:34:18,856 logs2netcdfs.py download_process_logs():807 [1] Time to process: 24.45 seconds INFO 2025-10-21 21:34:18,857 process.py calibrate():227 [1] Calibration steps for 2025.092.02 INFO 2025-10-21 21:34:19,310 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-10-21 21:34:19,313 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-10-21 21:34:21,288 calibrate.py _nudge_pos():1806 [1] 210: 0.110 0.0026982 -0.0045666 36098 120.32 3.332 -7.033 2025-04-02T18:15:29.448801024 INFO 2025-10-21 21:34:21,883 calibrate.py _nudge_pos():1806 [1] 265: 0.160 0.0005662 -0.0008135 2740 9.13 9.213 -16.510 2025-04-02T18:25:31.447561216 INFO 2025-10-21 21:34:22,554 calibrate.py _nudge_pos():1806 [1] 328: 0.170 0.0058435 -0.0032195 40768 135.89 6.389 -4.390 2025-04-02T20:42:27.044754176 INFO 2025-10-21 21:34:22,567 calibrate.py _nudge_pos():1806 [1] 329: 0.140 -0.0007055 0.0000412 30 0.10 -1082.601 78.933 2025-04-02T20:42:33.054342400 INFO 2025-10-21 21:34:22,600 calibrate.py _nudge_pos():1806 [1] 332: 0.140 -0.0001850 -0.0000435 30 0.10 -284.355 -83.429 2025-04-02T20:42:41.053794560 INFO 2025-10-21 21:34:23,047 calibrate.py _nudge_pos():1806 [1] 373: 0.130 -0.0000161 0.0000350 15 0.05 -51.390 138.958 2025-04-02T20:43:24.050849024 INFO 2025-10-21 21:34:23,155 calibrate.py _nudge_pos():1806 [1] 383: 0.180 0.0001379 -0.0006356 2305 7.68 2.667 -15.335 2025-04-02T20:51:14.048652032 INFO 2025-10-21 21:34:23,832 calibrate.py _nudge_pos():1806 [1] 446: 0.010 -0.0000344 -0.0005847 2081 6.93 -0.737 -15.628 2025-04-02T20:59:12.245893120 INFO 2025-10-21 21:34:24,346 calibrate.py _nudge_pos():1806 [1] 493: 0.020 0.0000711 -0.0000241 25 0.08 132.073 -55.919 2025-04-02T21:00:03.252398848 INFO 2025-10-21 21:34:24,357 calibrate.py _nudge_pos():1806 [1] 494: 0.020 0.0000444 -0.0000119 15 0.05 141.237 -47.358 2025-04-02T21:00:06.252193536 INFO 2025-10-21 21:34:24,379 calibrate.py _nudge_pos():1806 [1] 496: 0.070 -0.0002025 -0.0004730 1620 5.40 -5.574 -16.240 2025-04-02T21:05:31.249929728 INFO 2025-10-21 21:34:24,904 calibrate.py _nudge_pos():1806 [1] 544: 0.180 -0.0000773 -0.0069142 35411 118.04 -0.097 -10.854 2025-04-02T23:04:20.651532288 INFO 2025-10-21 21:34:25,487 calibrate.py _nudge_pos():1806 [1] 597: 0.150 -0.0000527 -0.0000263 20 0.06 -123.690 -76.979 2025-04-02T23:05:17.647627520 INFO 2025-10-21 21:34:25,499 calibrate.py _nudge_pos():1806 [1] 598: 0.030 -0.0003502 -0.0010471 3831 12.77 -4.076 -15.198 2025-04-02T23:18:03.845139456 INFO 2025-10-21 21:34:26,130 calibrate.py _nudge_pos():1806 [1] 655: 0.050 0.0005763 -0.0025169 40783 135.94 0.630 -3.431 2025-04-03T01:34:58.452400384 INFO 2025-10-21 21:34:27,035 calibrate.py _nudge_pos():1806 [1] 736: 0.080 0.0001112 -0.0003406 3515 11.71 1.410 -5.388 2025-04-03T01:48:01.448761344 INFO 2025-10-21 21:34:27,431 calibrate.py _nudge_pos():1806 [1] 772: 0.110 0.0001143 -0.0001111 2060 6.86 2.474 -2.998 2025-04-03T01:55:28.448140032 INFO 2025-10-21 21:34:28,573 calibrate.py _nudge_pos():1806 [1] 876: 0.150 0.0001028 -0.0000449 1970 6.56 2.328 -1.269 2025-04-03T02:03:45.454092800 INFO 2025-10-21 21:34:29,269 calibrate.py _nudge_pos():1806 [1] 939: 0.200 -0.0035327 0.0023287 18596 61.98 -8.468 6.962 2025-04-03T03:06:46.645063424 INFO 2025-10-21 21:34:29,732 calibrate.py _nudge_pos():1806 [1] 981: 0.030 0.0012816 0.0032149 14371 47.90 3.975 12.437 2025-04-03T03:55:22.045344768 INFO 2025-10-21 21:34:30,029 calibrate.py _nudge_pos():1806 [1] 1008: 0.010 0.0000808 -0.0001045 105 0.35 34.626 -55.861 2025-04-03T03:56:09.052124416 INFO 2025-10-21 21:34:30,085 calibrate.py _nudge_pos():1806 [1] 1013: 0.010 -0.0000340 -0.0000066 15 0.05 -108.364 -26.304 2025-04-03T03:56:16.051644928 INFO 2025-10-21 21:34:30,119 calibrate.py _nudge_pos():1806 [1] 1016: 0.050 0.0000073 -0.0001011 305 1.01 1.077 -18.481 2025-04-03T03:57:20.047260928 INFO 2025-10-21 21:34:30,704 calibrate.py _nudge_pos():1806 [1] 1069: 0.130 0.0008829 0.0019146 6345 21.15 6.203 16.777 2025-04-03T04:19:21.046766592 INFO 2025-10-21 21:34:31,853 calibrate.py _nudge_pos():1806 [1] 1173: 0.190 0.0000199 -0.0001249 280 0.93 3.172 -24.893 2025-04-03T04:22:00.045874432 INFO 2025-10-21 21:34:32,435 calibrate.py _nudge_pos():1806 [1] 1225: 0.010 0.0005517 0.0001722 2151 7.17 11.438 4.453 2025-04-03T04:30:01.252909312 INFO 2025-10-21 21:34:32,492 calibrate.py _nudge_pos():1806 [1] 1230: 0.170 0.0000167 0.0000004 15 0.05 53.324 1.446 2025-04-03T04:30:08.052443392 INFO 2025-10-21 21:34:32,515 calibrate.py _nudge_pos():1806 [1] 1232: 0.170 0.0000713 0.0000237 25 0.08 132.471 54.799 2025-04-03T04:30:14.052032512 INFO 2025-10-21 21:34:33,180 calibrate.py _nudge_pos():1806 [1] 1292: 0.010 0.0002698 0.0000478 1466 4.88 8.208 1.814 2025-04-03T04:36:08.247768320 INFO 2025-10-21 21:34:33,960 calibrate.py _nudge_pos():1806 [1] 1362: 0.050 0.0004691 0.0002508 2000 6.66 10.459 6.976 2025-04-03T04:43:57.245639680 INFO 2025-10-21 21:34:34,051 calibrate.py _nudge_pos():1806 [1] 1370: 0.050 0.0000063 -0.0000195 15 0.05 20.037 -77.522 2025-04-03T04:44:08.244886272 INFO 2025-10-21 21:34:34,719 calibrate.py _nudge_pos():1806 [1] 1425: 0.040 0.0000597 -0.0000156 20 0.06 140.134 -45.686 2025-04-03T04:45:06.250912768 INFO 2025-10-21 21:34:34,832 calibrate.py _nudge_pos():1806 [1] 1435: 0.070 0.0003792 0.0002070 1985 6.61 8.519 5.800 2025-04-03T04:51:52.253099776 INFO 2025-10-21 21:34:52,955 calibrate.py _nudge_pos():1806 [1] 3046: 0.190 -0.0000239 0.0000181 20 0.06 -56.005 52.916 2025-04-03T05:18:46.252533248 INFO 2025-10-21 21:35:03,585 calibrate.py _nudge_pos():1806 [1] 3981: 0.090 0.0009122 0.0000792 2780 9.26 14.631 1.585 2025-04-03T05:43:37.450379008 INFO 2025-10-21 21:35:03,807 calibrate.py _nudge_pos():1806 [1] 3998: 0.120 0.0007483 0.0001640 2495 8.31 13.374 3.655 2025-04-03T05:52:12.445099520 INFO 2025-10-21 21:35:04,103 calibrate.py _nudge_pos():1806 [1] 4024: 0.090 0.0044989 -0.0027659 35358 117.86 5.672 -4.349 2025-04-03T07:50:29.048948736 INFO 2025-10-21 21:35:04,278 calibrate.py _nudge_pos():1806 [1] 4039: 0.090 0.0005135 -0.0003920 2870 9.56 7.977 -7.596 2025-04-03T08:00:17.048668160 INFO 2025-10-21 21:35:04,407 calibrate.py _nudge_pos():1806 [1] 4050: 0.110 -0.0000100 -0.0000119 45 0.15 -10.124 -15.044 2025-04-03T08:00:36.047366656 INFO 2025-10-21 21:35:04,848 calibrate.py _nudge_pos():1806 [1] 4088: 0.100 0.0038375 -0.0029618 40953 136.51 4.177 -4.021 2025-04-03T10:17:43.653736960 INFO 2025-10-21 21:35:05,029 calibrate.py _nudge_pos():1806 [1] 4103: 0.090 0.0038104 -0.0029187 35 0.11 4995.765 -4772.374 2025-04-03T10:18:04.652298496 INFO 2025-10-21 21:35:06,371 calibrate.py _nudge_pos():1806 [1] 4219: 0.090 -0.0017784 0.0021762 13856 46.18 -5.720 8.731 2025-04-03T11:06:10.844580608 INFO 2025-10-21 21:35:10,707 calibrate.py _nudge_pos():1806 [1] 4575: 0.110 -0.0021404 0.0010777 13961 46.53 -6.831 4.291 2025-04-03T11:58:38.048982272 INFO 2025-10-21 21:35:15,186 calibrate.py _nudge_pos():1806 [1] 4952: 0.150 -0.0032065 0.0009538 13941 46.47 -10.245 3.803 2025-04-03T12:51:22.252219648 INFO 2025-10-21 21:35:20,188 calibrate.py _nudge_pos():1806 [1] 5374: 0.180 -0.0013995 -0.0002292 13976 46.58 -4.459 -0.912 2025-04-03T13:44:58.451895040 INFO 2025-10-21 21:35:20,202 calibrate.py _nudge_pos():1806 [1] 5375: 0.170 0.0000592 0.0000359 20 0.06 138.764 104.929 2025-04-03T13:45:02.451621120 INFO 2025-10-21 21:35:24,473 calibrate.py _nudge_pos():1806 [1] 5733: 0.200 -0.0009978 0.0011409 13960 46.53 -3.182 4.543 2025-04-03T14:37:31.645886464 INFO 2025-10-21 21:35:53,503 calibrate.py _nudge_pos():1862 [1] 8125: - - - 0 0.00 - - INFO 2025-10-21 21:35:53,503 calibrate.py _nudge_pos():1868 [1] Points in final series = 415223 INFO 2025-10-21 21:36:29,930 calibrate.py _read_oxy_coeffs():1189 [1] Looking for calibration file for O2 sensor serial number 103 on port side INFO 2025-10-21 21:36:29,932 calibrate.py _read_oxy_coeffs():1219 [1] Executing: find "/Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files" -name "103" INFO 2025-10-21 21:36:30,160 calibrate.py _read_oxy_coeffs():1238 [1] Found calibration date dirs: 2010-2008 2011_Feb 2012_Feb 2013_Apr 2013_Aug 2014_Sep 2015_Aug 2019_Oct 2021_Apr 2024_Jun WARNING 2025-10-21 21:36:30,165 calibrate.py _cal_date_xml_files():1081 [1] Found 17 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/103/2010-2008 INFO 2025-10-21 21:36:30,166 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-21 21:36:30,166 calibrate.py _cal_date_xml_files():1116 [1] Cannot parse CalibrationDate, 16-Feb-11p INFO 2025-10-21 21:36:30,167 calibrate.py _cal_date_xml_files():1123 [1] Trying to parse CalibrationDate without 'p' WARNING 2025-10-21 21:36:30,172 calibrate.py _cal_date_xml_files():1081 [1] Found 14 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/103/2011_Feb INFO 2025-10-21 21:36:30,172 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-21 21:36:30,173 calibrate.py _cal_date_xml_files():1116 [1] Cannot parse CalibrationDate, 16-Feb-11p INFO 2025-10-21 21:36:30,173 calibrate.py _cal_date_xml_files():1123 [1] Trying to parse CalibrationDate without 'p' WARNING 2025-10-21 21:36:30,178 calibrate.py _cal_date_xml_files():1081 [1] Found 14 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/103/2012_Feb INFO 2025-10-21 21:36:30,178 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-21 21:36:30,179 calibrate.py _cal_date_xml_files():1116 [1] Cannot parse CalibrationDate, 16-Feb-11p INFO 2025-10-21 21:36:30,179 calibrate.py _cal_date_xml_files():1123 [1] Trying to parse CalibrationDate without 'p' WARNING 2025-10-21 21:36:30,187 calibrate.py _cal_date_xml_files():1081 [1] Found 14 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/103/2013_Apr INFO 2025-10-21 21:36:30,187 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-21 21:36:30,188 calibrate.py _cal_date_xml_files():1116 [1] Cannot parse CalibrationDate, 16-Feb-11p INFO 2025-10-21 21:36:30,188 calibrate.py _cal_date_xml_files():1123 [1] Trying to parse CalibrationDate without 'p' WARNING 2025-10-21 21:36:30,194 calibrate.py _cal_date_xml_files():1081 [1] Found 14 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/103/2013_Aug INFO 2025-10-21 21:36:30,194 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-21 21:36:30,194 calibrate.py _cal_date_xml_files():1116 [1] Cannot parse CalibrationDate, 16-Feb-11p INFO 2025-10-21 21:36:30,195 calibrate.py _cal_date_xml_files():1123 [1] Trying to parse CalibrationDate without 'p' WARNING 2025-10-21 21:36:30,200 calibrate.py _cal_date_xml_files():1081 [1] Found 14 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/103/2014_Sep INFO 2025-10-21 21:36:30,200 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-21 21:36:30,200 calibrate.py _cal_date_xml_files():1116 [1] Cannot parse CalibrationDate, 16-Feb-11p INFO 2025-10-21 21:36:30,200 calibrate.py _cal_date_xml_files():1123 [1] Trying to parse CalibrationDate without 'p' WARNING 2025-10-21 21:36:30,205 calibrate.py _cal_date_xml_files():1081 [1] Found 14 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/103/2015_Aug INFO 2025-10-21 21:36:30,205 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-21 21:36:30,206 calibrate.py _cal_date_xml_files():1116 [1] Cannot parse CalibrationDate, 16-Feb-11p INFO 2025-10-21 21:36:30,206 calibrate.py _cal_date_xml_files():1123 [1] Trying to parse CalibrationDate without 'p' WARNING 2025-10-21 21:36:30,211 calibrate.py _cal_date_xml_files():1081 [1] Found 14 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/103/2019_Oct INFO 2025-10-21 21:36:30,211 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-21 21:36:30,211 calibrate.py _cal_date_xml_files():1116 [1] Cannot parse CalibrationDate, 16-Feb-11p INFO 2025-10-21 21:36:30,211 calibrate.py _cal_date_xml_files():1123 [1] Trying to parse CalibrationDate without 'p' WARNING 2025-10-21 21:36:30,217 calibrate.py _cal_date_xml_files():1081 [1] Found 14 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/103/2021_Apr INFO 2025-10-21 21:36:30,217 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-21 21:36:30,218 calibrate.py _cal_date_xml_files():1116 [1] Cannot parse CalibrationDate, 16-Feb-11p INFO 2025-10-21 21:36:30,218 calibrate.py _cal_date_xml_files():1123 [1] Trying to parse CalibrationDate without 'p' WARNING 2025-10-21 21:36:30,223 calibrate.py _cal_date_xml_files():1081 [1] Found 14 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/103/2024_Jun INFO 2025-10-21 21:36:30,224 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-21 21:36:30,224 calibrate.py _cal_date_xml_files():1116 [1] Cannot parse CalibrationDate, 16-Feb-11p INFO 2025-10-21 21:36:30,224 calibrate.py _cal_date_xml_files():1123 [1] Trying to parse CalibrationDate without 'p' INFO 2025-10-21 21:36:30,230 calibrate.py _read_oxy_coeffs():1247 [1] File /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/103/2011_Feb/Oxygen_SBE43_0103.XML has CalibrationDate 2011-02-16 00:00:00+00:00 INFO 2025-10-21 21:36:30,230 calibrate.py _read_oxy_coeffs():1263 [1] File /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/103/2011_Feb/Oxygen_SBE43_0103.XML is just before 2025.092.02 with mission_start=2025-04-02T16:13:00.892211456 INFO 2025-10-21 21:36:42,089 calibrate.py _calibrated_oxygen():2513 [1] dissolvedO2_port: parsed from /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/103/2011_Feb/Oxygen_SBE43_0103.XML file: {'Soc': 0.4598, 'offset': -0.539, 'A': -0.0030238, 'B': 0.00015619, 'C': -2.652e-06, 'D0': 2.5826, 'D1': 0.00019263, 'D2': -0.04648, 'E': 0.036, 'Tau20': 1.83, 'H1': -0.033, 'H2': 5000.0, 'H3': 1450.0} INFO 2025-10-21 21:36:42,097 calibrate.py _read_oxy_coeffs():1189 [1] Looking for calibration file for O2 sensor serial number 143 on stbd side INFO 2025-10-21 21:36:42,097 calibrate.py _read_oxy_coeffs():1219 [1] Executing: find "/Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files" -name "143" INFO 2025-10-21 21:36:42,281 calibrate.py _read_oxy_coeffs():1238 [1] Found calibration date dirs: 2011_June 2012_Oct 2013-Dec 2013_July 2015-Oct 2017_Mar 2020_Feb 2023_Jan 2024_Jan WARNING 2025-10-21 21:36:42,287 calibrate.py _cal_date_xml_files():1081 [1] Found 11 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/143/2011_June INFO 2025-10-21 21:36:42,287 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-21 21:36:42,292 calibrate.py _cal_date_xml_files():1081 [1] Found 11 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/143/2012_Oct INFO 2025-10-21 21:36:42,292 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-21 21:36:42,297 calibrate.py _cal_date_xml_files():1081 [1] Found 11 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/143/2013-Dec INFO 2025-10-21 21:36:42,297 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-21 21:36:42,303 calibrate.py _cal_date_xml_files():1081 [1] Found 11 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/143/2013_July INFO 2025-10-21 21:36:42,303 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-21 21:36:42,309 calibrate.py _cal_date_xml_files():1081 [1] Found 11 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/143/2015-Oct INFO 2025-10-21 21:36:42,309 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-21 21:36:42,314 calibrate.py _cal_date_xml_files():1081 [1] Found 11 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/143/2017_Mar INFO 2025-10-21 21:36:42,314 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-21 21:36:42,320 calibrate.py _cal_date_xml_files():1081 [1] Found 11 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/143/2020_Feb INFO 2025-10-21 21:36:42,320 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-21 21:36:42,325 calibrate.py _cal_date_xml_files():1081 [1] Found 11 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/143/2023_Jan INFO 2025-10-21 21:36:42,326 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-21 21:36:42,331 calibrate.py _cal_date_xml_files():1081 [1] Found 11 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/143/2024_Jan INFO 2025-10-21 21:36:42,331 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} INFO 2025-10-21 21:36:42,340 calibrate.py _read_oxy_coeffs():1247 [1] File /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/143/2013_July/Oxygen_SBE43_0143.XML has CalibrationDate 2013-07-17 00:00:00+00:00 INFO 2025-10-21 21:36:42,340 calibrate.py _read_oxy_coeffs():1263 [1] File /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/143/2013_July/Oxygen_SBE43_0143.XML is just before 2025.092.02 with mission_start=2025-04-02T16:13:00.892211456 INFO 2025-10-21 21:36:54,265 calibrate.py _calibrated_oxygen():2513 [1] dissolvedO2_stbd: parsed from /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/143/2013_July/Oxygen_SBE43_0143.XML file: {'Soc': 0.42815, 'offset': -0.4829, 'A': -0.0031081, 'B': 0.0001985, 'C': -3.3814e-06, 'D0': 2.5826, 'D1': 0.000192634, 'D2': -0.0464803, 'E': 0.036, 'Tau20': 1.28, 'H1': -0.033, 'H2': 5000.0, 'H3': 1450.0} INFO 2025-10-21 21:37:10,569 calibrate.py _geometric_depth_correction():3423 [1] seabird25p: d_beg_time_diff: 66 seconds, d_end_time_diff: 0 seconds INFO 2025-10-21 21:37:15,350 calibrate.py _geometric_depth_correction():3423 [1] seabird25p: d_beg_time_diff: 66 seconds, d_end_time_diff: 0 seconds INFO 2025-10-21 21:37:15,358 calibrate.py _ctd_process():2919 [1] Performing range checking of ['seabird25p_salinity'] in 2025.092.02/seabird25p.nc WARNING 2025-10-21 21:37:15,361 calibrate.py _range_qc_combined_nc():890 [1] More than 500 (616) seabird25p_salinity values found outside of range. This may indicate a problem with the seabird25p data. INFO 2025-10-21 21:37:15,361 calibrate.py _range_qc_combined_nc():898 [1] Setting 616 seabird25p_salinity values to NaN INFO 2025-10-21 21:37:15,361 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('seabird25p_salinity', Range(min=30, max=40))] INFO 2025-10-21 21:37:15,361 calibrate.py _range_qc_combined_nc():936 [1] Done range checking seabird25p INFO 2025-10-21 21:37:15,674 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/i2map/missionnetcdfs/2025.092.02/i2map_2025.092.02_cal.nc INFO 2025-10-21 21:38:02,433 calibrate.py write_netcdf():3512 [1] Data variables written: depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, seabird25p_beam_transmittance, seabird25p_conductivity, seabird25p_conductivity_onboard, seabird25p_depth, seabird25p_dissolvedO2_port, seabird25p_dissolvedO2_stbd, seabird25p_oxygen_mll_port, seabird25p_oxygen_mll_stbd, seabird25p_oxygen_umolkg_port, seabird25p_oxygen_umolkg_stbd, seabird25p_salinity, seabird25p_salinity_onboard, seabird25p_temperature, seabird25p_temperature_onboard, seabird25p_time, tailcone_propRpm, tailcone_time, time INFO 2025-10-21 21:38:02,436 process.py align():251 [1] Alignment steps for 2025.092.02 INFO 2025-10-21 21:38:02,475 align.py process_cal():139 [1] Processing i2map_2025.092.02_cal.nc from /data/auv_data/i2map/missionnetcdfs/2025.092.02 INFO 2025-10-21 21:38:02,581 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-10-21 21:38:02,591 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-10-21 21:38:02,848 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-10-21 21:38:02,861 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-10-21 21:38:03,157 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-10-21 21:38:03,170 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-10-21 21:38:03,327 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-10-21 21:38:03,327 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-10-21 21:38:03,440 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-10-21 21:38:03,454 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-10-21 21:38:03,736 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2025.092.02_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 21:38:03,759 align.py process_cal():249 [1] seabird25p_temperature: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 21:38:04,128 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2025.092.02_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 21:38:04,155 align.py process_cal():249 [1] seabird25p_conductivity: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 21:38:04,645 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2025.092.02_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 21:38:04,671 align.py process_cal():249 [1] seabird25p_salinity: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 21:38:05,046 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2025.092.02_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 21:38:05,070 align.py process_cal():249 [1] seabird25p_temperature_onboard: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 21:38:05,518 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2025.092.02_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 21:38:05,542 align.py process_cal():249 [1] seabird25p_conductivity_onboard: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 21:38:05,909 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2025.092.02_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 21:38:06,011 align.py process_cal():249 [1] seabird25p_salinity_onboard: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 21:38:06,373 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2025.092.02_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 21:38:06,395 align.py process_cal():249 [1] seabird25p_dissolvedO2_port: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 21:38:06,759 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2025.092.02_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 21:38:06,782 align.py process_cal():249 [1] seabird25p_oxygen_mll_port: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 21:38:07,144 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2025.092.02_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 21:38:07,166 align.py process_cal():249 [1] seabird25p_oxygen_umolkg_port: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 21:38:07,529 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2025.092.02_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 21:38:07,551 align.py process_cal():249 [1] seabird25p_dissolvedO2_stbd: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 21:38:07,916 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2025.092.02_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 21:38:07,943 align.py process_cal():249 [1] seabird25p_oxygen_mll_stbd: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 21:38:08,327 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2025.092.02_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 21:38:08,347 align.py process_cal():249 [1] seabird25p_oxygen_umolkg_stbd: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 21:38:08,709 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2025.092.02_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 21:38:08,731 align.py process_cal():249 [1] seabird25p_beam_transmittance: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 21:38:09,092 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2025.092.02_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 21:38:09,110 align.py process_cal():249 [1] seabird25p_depth: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 21:38:09,502 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 5.00 INFO 2025-10-21 21:38:09,668 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/i2map/missionnetcdfs/2025.092.02/i2map_2025.092.02_align.nc INFO 2025-10-21 21:38:09,818 align.py write_netcdf():342 [1] Data variables written: navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, seabird25p_beam_transmittance, seabird25p_conductivity, seabird25p_conductivity_onboard, seabird25p_depth, seabird25p_dissolvedO2_port, seabird25p_dissolvedO2_stbd, seabird25p_latitude, seabird25p_longitude, seabird25p_oxygen_mll_port, seabird25p_oxygen_mll_stbd, seabird25p_oxygen_umolkg_port, seabird25p_oxygen_umolkg_stbd, seabird25p_salinity, seabird25p_salinity_onboard, seabird25p_temperature, seabird25p_temperature_onboard, seabird25p_time, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-10-21 21:38:09,820 process.py resample():273 [1] Resampling steps for 2025.092.02 INFO 2025-10-21 21:38:09,820 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-10-21 21:38:09,846 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/i2map/missionnetcdfs/2025.092.02/i2map_2025.092.02_align.nc mission netCDF file INFO 2025-10-21 21:38:09,855 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/i2map/missionnetcdfs/2025.092.02/i2map_2025.092.02_align.nc mission netCDF file INFO 2025-10-21 21:38:09,859 resample.py get_mission_start_end():1145 [1] navigation: 2025-04-02T16:12:29.904334336 to 2025-04-03T15:18:13.048638720 (0 days 00:00:00.089993728 before mission_end) INFO 2025-10-21 21:38:09,864 resample.py get_mission_start_end():1145 [1] seabird25p: 2025-04-02T16:13:00.892211456 to 2025-04-03T15:18:13.138632448 (0 days 00:00:00 before mission_end) INFO 2025-10-21 21:38:09,869 resample.py get_mission_start_end():1145 [1] tailcone : 2025-04-02T16:11:50.087062016 to 2025-04-03T15:18:13.048638720 (0 days 00:00:00.089993728 before mission_end) INFO 2025-10-21 21:38:09,870 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/i2map/missionnetcdfs/2025.092.02/i2map_2025.092.02_align.nc mission netCDF file INFO 2025-10-21 21:38:09,871 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-10-21 21:38:10,944 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-10-21 21:38:11,071 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-10-21 21:38:11,194 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-10-21 21:38:11,315 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-10-21 21:38:11,499 resample.py resample_variable():1031 [1] Resampling seabird25p_temperature with frequency 1S following 3 point median filter INFO 2025-10-21 21:38:11,688 resample.py resample_variable():1031 [1] Resampling seabird25p_conductivity with frequency 1S following 3 point median filter INFO 2025-10-21 21:38:11,892 resample.py resample_variable():1031 [1] Resampling seabird25p_salinity with frequency 1S following 3 point median filter INFO 2025-10-21 21:38:12,080 resample.py resample_variable():1031 [1] Resampling seabird25p_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-10-21 21:38:12,265 resample.py resample_variable():1031 [1] Resampling seabird25p_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-10-21 21:38:12,450 resample.py resample_variable():1031 [1] Resampling seabird25p_salinity_onboard with frequency 1S following 3 point median filter INFO 2025-10-21 21:38:12,635 resample.py resample_variable():1031 [1] Resampling seabird25p_dissolvedO2_port with frequency 1S following 3 point median filter INFO 2025-10-21 21:38:12,820 resample.py resample_variable():1031 [1] Resampling seabird25p_oxygen_mll_port with frequency 1S following 3 point median filter INFO 2025-10-21 21:38:13,008 resample.py resample_variable():1031 [1] Resampling seabird25p_oxygen_umolkg_port with frequency 1S following 3 point median filter INFO 2025-10-21 21:38:13,194 resample.py resample_variable():1031 [1] Resampling seabird25p_dissolvedO2_stbd with frequency 1S following 3 point median filter INFO 2025-10-21 21:38:13,380 resample.py resample_variable():1031 [1] Resampling seabird25p_oxygen_mll_stbd with frequency 1S following 3 point median filter INFO 2025-10-21 21:38:13,568 resample.py resample_variable():1031 [1] Resampling seabird25p_oxygen_umolkg_stbd with frequency 1S following 3 point median filter INFO 2025-10-21 21:38:13,755 resample.py resample_variable():1031 [1] Resampling seabird25p_beam_transmittance with frequency 1S following 3 point median filter INFO 2025-10-21 21:38:13,880 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-10-21 21:38:14,395 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/i2map/missionnetcdfs/2025.092.02/i2map_2025.092.02_1S.nc INFO 2025-10-21 21:38:14,396 process.py archive():337 [1] Archiving steps for 2025.092.02 INFO 2025-10-21 21:38:14,396 process.py archive():347 [1] nc_file_base = /data/auv_data/i2map/missionnetcdfs/2025.092.02/i2map_2025.092.02, BASE_PATH = /data/auv_data INFO 2025-10-21 21:38:14,398 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/i2map/missionnetcdfs/2025.092.02/i2map_2025.092.02 files to /Volumes/AUVCTD/surveys/2025/netcdf INFO 2025-10-21 21:38:14,399 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2025/netcdf/i2map_2025.092.02_1S.nc INFO 2025-10-21 21:38:14,442 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2025.092.02/i2map_2025.092.02_1S.nc /Volumes/AUVCTD/surveys/2025/netcdf done. INFO 2025-10-21 21:38:14,443 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2025/netcdf/i2map_2025.092.02_cal.nc INFO 2025-10-21 21:38:14,793 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2025.092.02/i2map_2025.092.02_cal.nc /Volumes/AUVCTD/surveys/2025/netcdf done. INFO 2025-10-21 21:38:14,794 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2025/netcdf/i2map_2025.092.02_align.nc INFO 2025-10-21 21:38:15,079 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2025.092.02/i2map_2025.092.02_align.nc /Volumes/AUVCTD/surveys/2025/netcdf done. INFO 2025-10-21 21:38:15,091 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2025.092.02/gps.nc /Volumes/AUVCTD/missionnetcdfs/2025/2025092/2025.092.02 done. INFO 2025-10-21 21:38:15,488 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2025.092.02/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2025/2025092/2025.092.02 done. INFO 2025-10-21 21:38:15,602 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2025.092.02/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2025/2025092/2025.092.02 done. INFO 2025-10-21 21:38:15,825 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2025.092.02/seabird25p.nc /Volumes/AUVCTD/missionnetcdfs/2025/2025092/2025.092.02 done. INFO 2025-10-21 21:38:15,909 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2025.092.02/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2025/2025092/2025.092.02 done. INFO 2025-10-21 21:38:15,909 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-10-21 21:38:15,909 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2025.092.02/i2map_2025.092.02_processing.log /Volumes/AUVCTD/surveys/2025/netcdf