INFO 2025-07-24 17:34:11,812 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --mission 2025.203.00 -v --clobber --noinput INFO 2025-07-24 17:34:11,812 process.py process_mission():434 [1] dorado_info[mission]["comment"] = Monterey Bay MBTS Mission - 20325G Biolume, ISUS, and LISST payloads removed - ctdToUse = ctd1 INFO 2025-07-24 17:34:11,814 process.py process_mission():449 [1] Processing MBTS Line mission 2025.203.00 by user docker_user on host 9e05985a3fb3 INFO 2025-07-24 17:34:11,814 process.py download_process():165 [1] Download and processing steps for 2025.203.00 INFO 2025-07-24 17:34:11,814 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2025/2025203/2025.203.00 INFO 2025-07-24 17:34:11,815 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2025/2025203/2025.203.00 to /data/auv_data/dorado/missionlogs/2025.203.00 INFO 2025-07-24 17:34:20,838 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2025.203.00 INFO 2025-07-24 17:34:20,839 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2025.203.00/ctdDriver.log (34293606 bytes) INFO 2025-07-24 17:34:23,604 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2025.203.00/ctdDriver2.log (34281309 bytes) INFO 2025-07-24 17:34:26,204 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2025.203.00/gps.log (629276 bytes) INFO 2025-07-24 17:34:26,290 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2025.203.00/hydroscatlog.log (29997178 bytes) INFO 2025-07-24 17:34:29,341 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/dorado/missionlogs/2025.203.00/hydroscatlog.log: [7992] INFO 2025-07-24 17:34:29,434 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2025.203.00/navigation.log (173210360 bytes) INFO 2025-07-24 17:34:43,665 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2025.203.00/parosci.log (42668006 bytes) INFO 2025-07-24 17:34:47,200 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/dorado/missionlogs/2025.203.00/parosci.log: [728066 728067 815447 815448 815449 859138 859139] INFO 2025-07-24 17:34:47,310 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2025.203.00/FLBBCD2K.log (33514875 bytes) INFO 2025-07-24 17:34:51,858 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/dorado/missionlogs/2025.203.00/FLBBCD2K.log: [ 6 648 650 652 654 656 660 662 666 668 670 672 675 677 681 688 25900 25905 25909 25913 25918 25929] INFO 2025-07-24 17:34:51,982 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2025.203.00/tailCone.log (21430791 bytes) INFO 2025-07-24 17:34:54,873 logs2netcdfs.py download_process_logs():807 [1] Time to process: 34.03 seconds INFO 2025-07-24 17:34:54,874 process.py download_process():198 [1] Processing file /data/auv_data/dorado/missionlogs/2025.203.00/lopc.bin (116496156 bytes) INFO 2025-07-24 17:34:54,874 lopcToNetCDF.py main():2297 [1] Processing begun: Thu Jul 24 17:34:54 2025 INFO 2025-07-24 17:34:54,874 lopcToNetCDF.py constructTimestampList():1296 [1] parosci_nc = /data/auv_data/dorado/missionnetcdfs/2025.203.00/parosci.nc INFO 2025-07-24 17:34:54,874 lopcToNetCDF.py constructTimestampList():1297 [1] Using NetCDF4 to get start and end epoch seconds for this mission from this URL: INFO 2025-07-24 17:34:54,874 lopcToNetCDF.py constructTimestampList():1300 [1] /data/auv_data/dorado/missionnetcdfs/2025.203.00/parosci.nc INFO 2025-07-24 17:34:54,878 lopcToNetCDF.py constructTimestampList():1317 [1] From associated parosci.nc file: sensor_on_time = 1753203993.8, sensor_off_time = 1753293311.7 INFO 2025-07-24 17:34:54,878 lopcToNetCDF.py constructTimestampList():1322 [1] Duration is 89317 seconds. Expecting to read 178634 L frames from the lopc.bin file. INFO 2025-07-24 17:34:54,878 lopcToNetCDF.py constructTimestampList():1330 [1] recCount not passed in, assuming we'll have 178634 records from the lopc.bin file. INFO 2025-07-24 17:34:55,966 lopcToNetCDF.py main():2321 [1] Examined sibling parosci.nc file to find startTime = 2025-07-22 17:06:33 Z and endTime = 2025-07-23 17:55:11 Z with 178634 records expected to be read from lopc.bin INFO 2025-07-24 17:34:55,966 lopcToNetCDF.py unpackLOPCbin():723 [1] >>> Unpacking LOPC data from /data/auv_data/dorado/missionlogs/2025.203.00/lopc.bin INFO 2025-07-24 17:34:55,966 lopcToNetCDF.py unpackLOPCbin():724 [1] >>> Will write to NetCDF file /data/auv_data/dorado/missionnetcdfs/2025.203.00/lopc.nc INFO 2025-07-24 17:34:55,967 lopcToNetCDF.py openNetCDFFile():1861 [1] Will output NetCDF file to /data/auv_data/dorado/missionnetcdfs/2025.203.00/lopc.nc INFO 2025-07-24 17:34:55,967 lopcToNetCDF.py openNetCDFFile():1887 [1] missionName = 2025.203.00 INFO 2025-07-24 17:34:55,968 lopcToNetCDF.py openNetCDFFile():1910 [1] Writing bin axis for len(self.dataStructure['binSizeList']) = 994 INFO 2025-07-24 17:34:56,007 lopcToNetCDF.py unpackLOPCbin():951 [1] L Frames sample M Frames ShortLFrame LBeforeMEnd MBeforeLEnd UnknownFrame Garbled L INFO 2025-07-24 17:34:56,007 lopcToNetCDF.py unpackLOPCbin():969 [1] Count Count Count Error Error Error Error Error INFO 2025-07-24 17:34:56,007 lopcToNetCDF.py unpackLOPCbin():987 [1] -------- -------- -------- ----------- ----------- ----------- ----------- ------------ INFO 2025-07-24 17:35:04,137 lopcToNetCDF.py unpackLOPCbin():1013 [1] 10000 10000 20127 0 0 0 0 0 8.2 seconds, last L Frame: 178634 INFO 2025-07-24 17:35:12,860 lopcToNetCDF.py unpackLOPCbin():1013 [1] 20000 20000 41646 0 0 0 0 0 8.7 seconds, last L Frame: 178634 INFO 2025-07-24 17:35:23,526 lopcToNetCDF.py unpackLOPCbin():1013 [1] 30000 30000 69934 0 0 0 0 0 10.7 seconds, last L Frame: 178634 INFO 2025-07-24 17:35:42,919 lopcToNetCDF.py unpackLOPCbin():1013 [1] 40000 40000 123677 0 0 0 0 0 19.4 seconds, last L Frame: 178634 INFO 2025-07-24 17:35:55,997 lopcToNetCDF.py unpackLOPCbin():1013 [1] 50000 50000 159125 0 0 0 0 0 13.1 seconds, last L Frame: 178634 INFO 2025-07-24 17:36:09,283 lopcToNetCDF.py unpackLOPCbin():1013 [1] 60000 60000 193851 0 0 0 0 0 13.3 seconds, last L Frame: 178634 INFO 2025-07-24 17:36:24,165 lopcToNetCDF.py unpackLOPCbin():1013 [1] 70000 4464 233371 0 0 0 0 0 14.9 seconds, last L Frame: 178634 INFO 2025-07-24 17:36:30,184 lopcToNetCDF.py unpackLOPCbin():1013 [1] 80000 14464 247546 0 0 0 0 0 6.0 seconds, last L Frame: 178634 INFO 2025-07-24 17:36:34,853 lopcToNetCDF.py unpackLOPCbin():1013 [1] 90000 24464 258221 0 0 0 0 0 4.7 seconds, last L Frame: 178634 INFO 2025-07-24 17:36:40,292 lopcToNetCDF.py unpackLOPCbin():1013 [1] 100000 34464 271073 0 0 0 0 0 5.4 seconds, last L Frame: 178634 INFO 2025-07-24 17:36:47,624 lopcToNetCDF.py unpackLOPCbin():1013 [1] 110000 44464 289137 0 0 0 0 0 7.3 seconds, last L Frame: 178634 INFO 2025-07-24 17:36:56,838 lopcToNetCDF.py unpackLOPCbin():1013 [1] 120000 54464 312770 0 0 0 0 0 9.2 seconds, last L Frame: 178634 INFO 2025-07-24 17:37:06,631 lopcToNetCDF.py unpackLOPCbin():1013 [1] 130000 64464 338489 0 0 0 0 0 9.8 seconds, last L Frame: 178634 INFO 2025-07-24 17:37:18,897 lopcToNetCDF.py unpackLOPCbin():1013 [1] 140000 8928 371798 0 0 0 0 0 12.3 seconds, last L Frame: 178634 INFO 2025-07-24 17:37:26,512 lopcToNetCDF.py unpackLOPCbin():1013 [1] 150000 18928 391035 0 0 0 0 0 7.6 seconds, last L Frame: 178634 INFO 2025-07-24 17:37:32,335 lopcToNetCDF.py unpackLOPCbin():1013 [1] 160000 28928 405025 0 0 0 0 0 5.8 seconds, last L Frame: 178634 INFO 2025-07-24 17:37:39,415 lopcToNetCDF.py unpackLOPCbin():1013 [1] 170000 38928 422061 0 0 0 0 0 7.1 seconds, last L Frame: 178634 INFO 2025-07-24 17:37:44,519 lopcToNetCDF.py main():2345 [1] >>> Done reading file. INFO 2025-07-24 17:37:44,519 lopcToNetCDF.py main():2346 [1] lFrameCount = 178648, mFrameCount = 433188 INFO 2025-07-24 17:37:44,520 lopcToNetCDF.py constructTimestampList():1296 [1] parosci_nc = /data/auv_data/dorado/missionnetcdfs/2025.203.00/parosci.nc INFO 2025-07-24 17:37:44,520 lopcToNetCDF.py constructTimestampList():1297 [1] Using NetCDF4 to get start and end epoch seconds for this mission from this URL: INFO 2025-07-24 17:37:44,520 lopcToNetCDF.py constructTimestampList():1300 [1] /data/auv_data/dorado/missionnetcdfs/2025.203.00/parosci.nc INFO 2025-07-24 17:37:44,523 lopcToNetCDF.py constructTimestampList():1317 [1] From associated parosci.nc file: sensor_on_time = 1753203993.8, sensor_off_time = 1753293311.7 INFO 2025-07-24 17:37:44,523 lopcToNetCDF.py constructTimestampList():1322 [1] Duration is 89317 seconds. Expecting to read 178634 L frames from the lopc.bin file. INFO 2025-07-24 17:37:44,524 lopcToNetCDF.py constructTimestampList():1330 [1] recCount not passed in, assuming we'll have 178634 records from the lopc.bin file. INFO 2025-07-24 17:37:44,524 lopcToNetCDF.py constructTimestampList():1340 [1] Calling correctSampleCountList() with sampleCountList[0] = 1 and len(sampleCountList) = 178648 INFO 2025-07-24 17:37:44,539 lopcToNetCDF.py correctSampleCountList():1737 [1] Found overflows at indices: [ 65535 131071] INFO 2025-07-24 17:37:44,540 lopcToNetCDF.py correctSampleCountList():1740 [1] Assigning values from slice starting at index 65535, i = 1 INFO 2025-07-24 17:37:44,546 lopcToNetCDF.py correctSampleCountList():1740 [1] Assigning values from slice starting at index 131071, i = 2 INFO 2025-07-24 17:37:44,548 lopcToNetCDF.py correctSampleCountList():1745 [1] Original sampleCountList = [ 1 2 3 ... 178648 178649 178650] INFO 2025-07-24 17:37:44,548 lopcToNetCDF.py correctSampleCountList():1746 [1] Found 0 0 values at indices: [] INFO 2025-07-24 17:37:44,548 lopcToNetCDF.py correctSampleCountList():1779 [1] Found 0 stuck values at indices: [] INFO 2025-07-24 17:37:44,549 lopcToNetCDF.py deSpike():1588 [1] d_sampleCountList = [1 1 1 ... 1 1 1] INFO 2025-07-24 17:37:44,549 lopcToNetCDF.py deSpike():1590 [1] Found 0 spike indicators at indices: [] INFO 2025-07-24 17:37:44,549 lopcToNetCDF.py correctSampleCountList():1805 [1] After despike() sampleCountList = [ 1 2 3 ... 178648 178649 178650] INFO 2025-07-24 17:37:44,550 lopcToNetCDF.py constructTimestampList():1347 [1] correctSampleCountList() returned correctedSampleCountList = [ 1 2 3 ... 178648 178649 178650] with len(correctedSampleCountList) = 178648 INFO 2025-07-24 17:37:44,550 lopcToNetCDF.py constructTimestampList():1358 [1] Subtracting 1 from all values of correctedSampleCountList INFO 2025-07-24 17:37:44,550 lopcToNetCDF.py constructTimestampList():1363 [1] Constructing timestampArray from instrument corrected sampleCount and constant deltaT = 0.500000 INFO 2025-07-24 17:37:44,550 lopcToNetCDF.py constructTimestampList():1368 [1] New re-zeroed correctedSampleCountList = [0.00000e+00 5.00000e-01 1.00000e+00 ... 8.93235e+04 8.93240e+04 8.93245e+04] INFO 2025-07-24 17:37:44,551 lopcToNetCDF.py constructTimestampList():1379 [1] timestampArray = [1.75320399e+09 1.75320399e+09 1.75320399e+09 ... 1.75329332e+09 1.75329332e+09 1.75329332e+09] INFO 2025-07-24 17:37:44,552 lopcToNetCDF.py constructTimestampList():1380 [1] timestampArray[:2] = [1753203993.8 1753203994.3, ..., timestampArray[-2:] = 1753293317.8 1753293318.3] INFO 2025-07-24 17:37:44,738 lopcToNetCDF.py constructTimestampList():1389 [1] timestampList[:2] = [np.float64(1753203993.8056486), np.float64(1753203994.3056486)], ..., timestampList[-2:] = [np.float64(1753293317.8056486), np.float64(1753293318.3056486)]] INFO 2025-07-24 17:37:44,738 lopcToNetCDF.py constructTimestampList():1394 [1] Subsampling correctedSampleCountList (len = 178648) according to what got written to the netCDF file by the binning interval INFO 2025-07-24 17:37:44,738 lopcToNetCDF.py constructTimestampList():1399 [1] lFrameCountWrittenList[:2] = [20, 41], ... lFrameCountWrittenList[-2:] = [178625, 178646] INFO 2025-07-24 17:37:44,740 lopcToNetCDF.py constructTimestampList():1420 [1] len(subSampledCorrectedSampleCountList) = 8507 INFO 2025-07-24 17:37:44,740 lopcToNetCDF.py constructTimestampList():1439 [1] len(timestampList) = 178648 INFO 2025-07-24 17:37:44,740 lopcToNetCDF.py constructTimestampList():1440 [1] timestampList[:2] = [np.float64(1753203993.8056486), np.float64(1753203994.3056486)], ..., timestampList[-2:] = [np.float64(1753293317.8056486), np.float64(1753293318.3056486)]] INFO 2025-07-24 17:37:44,740 lopcToNetCDF.py constructTimestampList():1446 [1] Subsampling timestampList (len = 178648) according to what got written to the netCDF file by the binning interval INFO 2025-07-24 17:37:44,742 lopcToNetCDF.py constructTimestampList():1457 [1] Taking indices [[np.int32(19), np.int32(40)] ... [np.int32(178624), np.int32(178645)]] from timestampList to create subSampledTimestampList INFO 2025-07-24 17:37:44,749 lopcToNetCDF.py constructTimestampList():1463 [1] len(subSampledTimestampList) = 8507 INFO 2025-07-24 17:37:44,751 lopcToNetCDF.py constructTimestampList():1477 [1] Finding elements of cFrameEsecsList that != -9999 INFO 2025-07-24 17:37:44,794 lopcToNetCDF.py closeNetCDFFile():2096 [1] Writing time axis for len(tsList) = 8507 INFO 2025-07-24 17:37:44,794 lopcToNetCDF.py closeNetCDFFile():2099 [1] tsList[:1] = [np.float64(1753204003.3056486)], ..., tsList[-2:] = [np.float64(1753293306.8056486), np.float64(1753293317.3056486)] INFO 2025-07-24 17:37:44,794 lopcToNetCDF.py closeNetCDFFile():2100 [1] Begin time = 2025-07-22 17:06:43 Z INFO 2025-07-24 17:37:44,794 lopcToNetCDF.py closeNetCDFFile():2103 [1] End time = 2025-07-23 17:55:17 Z INFO 2025-07-24 17:37:44,794 lopcToNetCDF.py closeNetCDFFile():2107 [1] Writing time axis for len(cFrameEsecsList) = 8507 INFO 2025-07-24 17:37:44,794 lopcToNetCDF.py closeNetCDFFile():2111 [1] cFrameEsecsList[:1] = [1.75320399e+09], ..., cFrameEsecsList[-2:] = [1.75322776e+09 1.75322777e+09] INFO 2025-07-24 17:37:44,795 lopcToNetCDF.py closeNetCDFFile():2116 [1] Begin time = 2025-07-22 17:06:33 Z INFO 2025-07-24 17:37:44,795 lopcToNetCDF.py closeNetCDFFile():2120 [1] End time = 2025-07-22 23:42:48 Z INFO 2025-07-24 17:37:44,800 lopcToNetCDF.py main():2381 [1] Created file: /data/auv_data/dorado/missionnetcdfs/2025.203.00/lopc.nc INFO 2025-07-24 17:37:44,800 lopcToNetCDF.py main():2384 [1] Processing finished: Thu Jul 24 17:37:44 2025 Elapsed processing time from start of processing = 169 seconds INFO 2025-07-24 17:37:44,807 process.py calibrate():227 [1] Calibration steps for 2025.203.00 INFO 2025-07-24 17:37:45,601 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-07-24 17:37:45,604 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-07-24 17:37:46,813 calibrate.py _nudge_pos():1806 [1] 149: 0.120 0.0026663 -0.0040872 9162 30.54 12.956 -24.802 2025-07-22T17:39:20.190941952 INFO 2025-07-24 17:37:49,702 calibrate.py _nudge_pos():1806 [1] 417: 0.130 0.0004384 -0.0049438 14616 48.72 1.336 -18.804 2025-07-22T18:32:30.192411904 INFO 2025-07-24 17:37:52,705 calibrate.py _nudge_pos():1806 [1] 694: 0.140 0.0008909 -0.0034839 12181 40.60 3.257 -15.900 2025-07-22T19:17:42.386613760 INFO 2025-07-24 17:37:56,320 calibrate.py _nudge_pos():1806 [1] 1029: 0.150 0.0016407 -0.0026258 13286 44.28 5.500 -10.988 2025-07-22T20:07:33.591702528 INFO 2025-07-24 17:37:59,381 calibrate.py _nudge_pos():1806 [1] 1311: 0.170 0.0020170 -0.0023588 13936 46.45 6.446 -9.410 2025-07-22T20:58:41.791516416 INFO 2025-07-24 17:38:02,515 calibrate.py _nudge_pos():1806 [1] 1596: 0.180 0.0016423 -0.0026161 13856 46.18 5.279 -10.496 2025-07-22T21:49:36.992220672 INFO 2025-07-24 17:38:05,482 calibrate.py _nudge_pos():1806 [1] 1857: 0.010 0.0017374 -0.0028395 13901 46.33 5.568 -11.356 2025-07-22T22:40:17.383939584 INFO 2025-07-24 17:38:08,181 calibrate.py _nudge_pos():1806 [1] 2101: 0.010 0.0027556 -0.0033451 13486 44.95 9.103 -13.790 2025-07-22T23:29:17.592521472 INFO 2025-07-24 17:38:11,171 calibrate.py _nudge_pos():1806 [1] 2362: 0.030 0.0034182 -0.0048097 14400 48.00 10.576 -18.568 2025-07-23T00:21:37.787403264 INFO 2025-07-24 17:38:13,993 calibrate.py _nudge_pos():1806 [1] 2606: 0.060 0.0009833 -0.0045943 13656 45.52 3.209 -18.704 2025-07-23T01:11:11.983657216 INFO 2025-07-24 17:38:16,906 calibrate.py _nudge_pos():1806 [1] 2853: 0.050 -0.0006662 -0.0040859 12686 42.28 -2.340 -17.906 2025-07-23T01:57:35.192994048 INFO 2025-07-24 17:38:19,713 calibrate.py _nudge_pos():1806 [1] 3096: 0.040 0.0010816 -0.0028575 12596 41.98 3.827 -12.612 2025-07-23T02:43:36.383839488 INFO 2025-07-24 17:38:22,568 calibrate.py _nudge_pos():1806 [1] 3339: 0.080 0.0009039 -0.0010653 13965 46.55 2.885 -4.241 2025-07-23T03:34:11.585913856 INFO 2025-07-24 17:38:26,139 calibrate.py _nudge_pos():1806 [1] 3648: 0.040 0.0038060 -0.0008999 12081 40.27 14.044 -4.141 2025-07-23T04:19:35.789293312 INFO 2025-07-24 17:38:29,218 calibrate.py _nudge_pos():1806 [1] 3915: 0.180 0.0019607 -0.0007797 7205 24.01 12.133 -6.016 2025-07-23T04:48:02.792355584 INFO 2025-07-24 17:38:29,385 calibrate.py _nudge_pos():1806 [1] 3929: 0.190 0.0000059 -0.0000104 25 0.08 10.909 -24.156 2025-07-23T04:48:20.791122688 INFO 2025-07-24 17:38:30,987 calibrate.py _nudge_pos():1806 [1] 4069: 0.060 0.0006810 0.0005045 1246 4.15 24.382 22.527 2025-07-23T04:54:48.984529408 INFO 2025-07-24 17:38:32,019 calibrate.py _nudge_pos():1806 [1] 4159: 0.100 0.0012006 0.0011285 6279 20.93 8.523 9.991 2025-07-23T05:17:13.992390144 INFO 2025-07-24 17:38:32,088 calibrate.py _nudge_pos():1806 [1] 4164: 0.110 -0.0000356 0.0000627 215 0.71 -7.418 16.292 2025-07-23T05:18:01.989102080 INFO 2025-07-24 17:38:33,580 calibrate.py _nudge_pos():1806 [1] 4295: 0.010 0.0029103 -0.0059397 19327 64.42 6.712 -17.085 2025-07-23T06:24:37.385398784 INFO 2025-07-24 17:38:35,472 calibrate.py _nudge_pos():1806 [1] 4457: 0.090 0.0074643 -0.0079229 19311 64.37 17.229 -22.809 2025-07-23T07:31:40.589790464 INFO 2025-07-24 17:38:37,561 calibrate.py _nudge_pos():1806 [1] 4633: 0.110 0.0087133 -0.0081184 14626 48.75 26.551 -30.858 2025-07-23T08:23:20.787412480 INFO 2025-07-24 17:38:39,460 calibrate.py _nudge_pos():1806 [1] 4795: 0.090 0.0068171 -0.0067619 11951 39.83 25.420 -31.455 2025-07-23T09:05:51.992642816 INFO 2025-07-24 17:38:41,231 calibrate.py _nudge_pos():1806 [1] 4945: 0.060 0.0045977 -0.0063439 12161 40.53 16.847 -29.002 2025-07-23T09:48:53.185818880 INFO 2025-07-24 17:38:43,113 calibrate.py _nudge_pos():1806 [1] 5108: 0.060 0.0041181 -0.0068505 12171 40.57 15.076 -31.292 2025-07-23T10:32:09.387966976 INFO 2025-07-24 17:38:44,916 calibrate.py _nudge_pos():1806 [1] 5262: 0.060 0.0030999 -0.0070556 12146 40.48 11.371 -32.295 2025-07-23T11:15:11.591073792 INFO 2025-07-24 17:38:46,802 calibrate.py _nudge_pos():1806 [1] 5420: 0.030 0.0021242 -0.0070119 12266 40.88 7.715 -31.781 2025-07-23T11:58:41.792262912 INFO 2025-07-24 17:38:48,682 calibrate.py _nudge_pos():1806 [1] 5580: 0.080 0.0018182 0.0000774 2950 9.83 27.462 1.460 2025-07-23T12:11:10.790952960 INFO 2025-07-24 17:38:49,923 calibrate.py _nudge_pos():1806 [1] 5684: 0.180 0.0006916 0.0001730 5855 19.51 5.262 1.643 2025-07-23T12:32:25.783609856 INFO 2025-07-24 17:38:52,918 calibrate.py _nudge_pos():1806 [1] 5934: 0.180 0.0007953 -0.0072204 14370 47.90 2.465 -27.934 2025-07-23T13:24:28.989655808 INFO 2025-07-24 17:38:55,937 calibrate.py _nudge_pos():1806 [1] 6184: 0.040 0.0031034 -0.0075702 14391 47.97 9.604 -29.245 2025-07-23T14:16:36.385414400 INFO 2025-07-24 17:38:58,922 calibrate.py _nudge_pos():1806 [1] 6430: 0.040 0.0025122 -0.0077361 12566 41.88 8.903 -34.226 2025-07-23T15:02:34.586464768 INFO 2025-07-24 17:39:01,872 calibrate.py _nudge_pos():1806 [1] 6668: 0.040 0.0040195 -0.0082014 14186 47.28 12.616 -32.141 2025-07-23T15:53:48.785867776 INFO 2025-07-24 17:39:05,387 calibrate.py _nudge_pos():1806 [1] 6960: 0.190 0.0049103 -0.0025154 9465 31.55 23.096 -14.775 2025-07-23T16:30:12.786253312 INFO 2025-07-24 17:39:06,710 calibrate.py _nudge_pos():1806 [1] 7070: 0.080 0.0000174 -0.0002551 1995 6.65 0.389 -7.112 2025-07-23T16:38:40.991438848 INFO 2025-07-24 17:39:07,695 calibrate.py _nudge_pos():1806 [1] 7153: 0.120 0.0010380 -0.0003654 5040 16.80 9.170 -4.031 2025-07-23T16:56:50.986768896 INFO 2025-07-24 17:39:08,835 calibrate.py _nudge_pos():1806 [1] 7247: 0.050 0.0017376 -0.0047042 9635 32.12 8.027 -27.141 2025-07-23T17:30:31.188375808 INFO 2025-07-24 17:39:27,224 calibrate.py _nudge_pos():1862 [1] 8679: - - - 2 0.00 - - INFO 2025-07-24 17:39:27,224 calibrate.py _nudge_pos():1868 [1] Points in final series = 446083 INFO 2025-07-24 17:40:29,885 calibrate.py _geometric_depth_correction():3423 [1] hs2: d_beg_time_diff: -9 seconds, d_end_time_diff: -1 seconds INFO 2025-07-24 17:40:33,329 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 9 seconds, d_end_time_diff: -1 seconds INFO 2025-07-24 17:40:36,074 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 9 seconds, d_end_time_diff: -1 seconds INFO 2025-07-24 17:40:36,081 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2025.203.00/ctd1.nc INFO 2025-07-24 17:40:36,083 calibrate.py _range_qc_combined_nc():898 [1] Setting 1 ctd1_salinity values to NaN INFO 2025-07-24 17:40:36,083 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-07-24 17:40:36,083 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1 INFO 2025-07-24 17:40:39,315 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 41 seconds, d_end_time_diff: 0 seconds INFO 2025-07-24 17:40:42,041 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 41 seconds, d_end_time_diff: 0 seconds INFO 2025-07-24 17:40:42,047 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2025.203.00/ctd2.nc INFO 2025-07-24 17:40:42,049 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd2_salinity values to NaN INFO 2025-07-24 17:40:42,049 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-07-24 17:40:42,049 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2 ERROR 2025-07-24 17:40:42,050 calibrate.py process_logs():3542 [1] Error processing isus: isus has no orig_data - likely a missing or zero-sized .log file in missionlogs/2025.203.00 ERROR 2025-07-24 17:40:42,050 calibrate.py process_logs():3542 [1] Error processing biolume: biolume has no orig_data - likely a missing or zero-sized .log file in missionlogs/2025.203.00 INFO 2025-07-24 17:41:27,275 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2025.203.00/dorado_2025.203.00_cal.nc INFO 2025-07-24 17:41:27,601 calibrate.py write_netcdf():3512 [1] Data variables written: ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_salinity_onboard, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_par, ctd2_salinity, ctd2_salinity_onboard, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, ecopuck_bbp700, ecopuck_cdom, ecopuck_chl, ecopuck_time, gps_latitude, gps_longitude, gps_time, hs2_bbp420, hs2_bbp700, hs2_depth, hs2_fl700, hs2_time, lopc_LCcount, lopc_countListSum, lopc_flowSpeed, lopc_nonTransCount, lopc_time, lopc_transCount, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, tailcone_propRpm, tailcone_time, time INFO 2025-07-24 17:41:27,608 process.py align():251 [1] Alignment steps for 2025.203.00 INFO 2025-07-24 17:41:27,667 align.py process_cal():139 [1] Processing dorado_2025.203.00_cal.nc from /data/auv_data/dorado/missionnetcdfs/2025.203.00 INFO 2025-07-24 17:41:27,797 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-07-24 17:41:27,813 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-07-24 17:41:28,124 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-07-24 17:41:28,145 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-07-24 17:41:28,432 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-07-24 17:41:28,455 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-07-24 17:41:28,625 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-07-24 17:41:28,626 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-07-24 17:41:28,748 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-07-24 17:41:28,767 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-07-24 17:41:29,049 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2025.203.00_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-07-24 17:41:29,062 align.py process_cal():249 [1] hs2_bbp420: instrument_sample_rate_hz = 4.00 INFO 2025-07-24 17:41:29,308 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2025.203.00_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-07-24 17:41:29,322 align.py process_cal():249 [1] hs2_bbp700: instrument_sample_rate_hz = 4.00 INFO 2025-07-24 17:41:29,557 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2025.203.00_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-07-24 17:41:29,570 align.py process_cal():249 [1] hs2_fl700: instrument_sample_rate_hz = 4.00 INFO 2025-07-24 17:41:29,807 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2025.203.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-07-24 17:41:29,819 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-07-24 17:41:30,059 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2025.203.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-07-24 17:41:30,072 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-07-24 17:41:30,305 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2025.203.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-07-24 17:41:30,316 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-07-24 17:41:30,548 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2025.203.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-07-24 17:41:30,560 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-07-24 17:41:30,793 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2025.203.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-07-24 17:41:30,805 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-07-24 17:41:31,037 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2025.203.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-07-24 17:41:31,050 align.py process_cal():249 [1] ctd1_salinity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-07-24 17:41:31,281 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2025.203.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-07-24 17:41:31,297 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 4.00 INFO 2025-07-24 17:41:31,540 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2025.203.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-07-24 17:41:31,552 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 4.00 INFO 2025-07-24 17:41:31,781 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2025.203.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-07-24 17:41:31,794 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 4.00 INFO 2025-07-24 17:41:32,034 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2025.203.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-07-24 17:41:32,047 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 4.00 INFO 2025-07-24 17:41:32,282 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2025.203.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-07-24 17:41:32,294 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 4.00 INFO 2025-07-24 17:41:32,527 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2025.203.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-07-24 17:41:32,539 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-07-24 17:41:32,768 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2025.203.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-07-24 17:41:32,781 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-07-24 17:41:33,015 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2025.203.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-07-24 17:41:33,032 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-07-24 17:41:33,266 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2025.203.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-07-24 17:41:33,278 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-07-24 17:41:33,510 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2025.203.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-07-24 17:41:33,523 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-07-24 17:41:33,755 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2025.203.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-07-24 17:41:33,767 align.py process_cal():249 [1] ctd2_salinity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-07-24 17:41:34,001 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2025.203.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-07-24 17:41:34,013 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 4.00 INFO 2025-07-24 17:41:34,248 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2025.203.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-07-24 17:41:34,260 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 4.00 INFO 2025-07-24 17:41:34,498 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2025.203.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-07-24 17:41:34,511 align.py process_cal():249 [1] ctd2_par: instrument_sample_rate_hz = 4.00 INFO 2025-07-24 17:41:34,804 align.py process_cal():249 [1] lopc_countListSum: instrument_sample_rate_hz = 0.10 INFO 2025-07-24 17:41:34,967 align.py process_cal():249 [1] lopc_transCount: instrument_sample_rate_hz = 0.10 INFO 2025-07-24 17:41:35,134 align.py process_cal():249 [1] lopc_nonTransCount: instrument_sample_rate_hz = 0.10 INFO 2025-07-24 17:41:35,297 align.py process_cal():249 [1] lopc_LCcount: instrument_sample_rate_hz = 0.10 INFO 2025-07-24 17:41:35,457 align.py process_cal():249 [1] lopc_flowSpeed: instrument_sample_rate_hz = 0.10 INFO 2025-07-24 17:41:35,645 align.py process_cal():249 [1] ecopuck_bbp700: instrument_sample_rate_hz = 10.42 INFO 2025-07-24 17:41:36,235 align.py process_cal():249 [1] ecopuck_cdom: instrument_sample_rate_hz = 10.42 INFO 2025-07-24 17:41:36,744 align.py process_cal():249 [1] ecopuck_chl: instrument_sample_rate_hz = 10.42 INFO 2025-07-24 17:41:37,298 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 5.00 INFO 2025-07-24 17:41:37,479 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2025.203.00/dorado_2025.203.00_align.nc INFO 2025-07-24 17:41:37,742 align.py write_netcdf():342 [1] Data variables written: ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_salinity_onboard, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_par, ctd2_salinity, ctd2_salinity_onboard, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, ecopuck_bbp700, ecopuck_cdom, ecopuck_chl, ecopuck_depth, ecopuck_latitude, ecopuck_longitude, ecopuck_time, hs2_bbp420, hs2_bbp700, hs2_depth, hs2_fl700, hs2_latitude, hs2_longitude, hs2_time, lopc_LCcount, lopc_countListSum, lopc_depth, lopc_flowSpeed, lopc_latitude, lopc_longitude, lopc_nonTransCount, lopc_time, lopc_transCount, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-07-24 17:41:37,746 process.py resample():273 [1] Resampling steps for 2025.203.00 INFO 2025-07-24 17:41:37,747 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-07-24 17:41:37,795 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2025.203.00/dorado_2025.203.00_align.nc mission netCDF file INFO 2025-07-24 17:41:37,807 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2025.203.00/dorado_2025.203.00_align.nc mission netCDF file INFO 2025-07-24 17:41:37,810 resample.py get_mission_start_end():1145 [1] navigation: 2025-07-22T17:07:09.043234816 to 2025-07-23T17:55:11.586961408 (0 days 00:00:05.718687232 before mission_end) INFO 2025-07-24 17:41:37,813 resample.py get_mission_start_end():1145 [1] hs2 : 2025-07-22T17:06:25.176239616 to 2025-07-23T17:55:11.596960768 (0 days 00:00:05.708687872 before mission_end) INFO 2025-07-24 17:41:37,817 resample.py get_mission_start_end():1145 [1] ctd1 : 2025-07-22T17:06:43.145008896 to 2025-07-23T17:55:11.666956032 (0 days 00:00:05.638692608 before mission_end) INFO 2025-07-24 17:41:37,820 resample.py get_mission_start_end():1145 [1] ctd2 : 2025-07-22T17:07:15.122818304 to 2025-07-23T17:55:11.716952576 (0 days 00:00:05.588696064 before mission_end) INFO 2025-07-24 17:41:37,821 resample.py get_mission_start_end():1145 [1] lopc : 2025-07-22T17:06:43.305648640 to 2025-07-23T17:55:17.305648640 (0 days 00:00:00 before mission_end) INFO 2025-07-24 17:41:37,826 resample.py get_mission_start_end():1145 [1] ecopuck : 2025-07-22T17:06:19.016661760 to 2025-07-23T17:55:11.746950656 (0 days 00:00:05.558697984 before mission_end) INFO 2025-07-24 17:41:37,830 resample.py get_mission_start_end():1145 [1] tailcone : 2025-07-22T17:06:29.375952128 to 2025-07-23T17:54:42.468956160 (0 days 00:00:34.836692480 before mission_end) INFO 2025-07-24 17:41:37,831 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2025.203.00/dorado_2025.203.00_align.nc mission netCDF file INFO 2025-07-24 17:41:37,832 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-07-24 17:41:38,765 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-07-24 17:41:38,910 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-07-24 17:41:39,051 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-07-24 17:41:39,193 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-07-24 17:41:39,313 resample.py resample_variable():1031 [1] Resampling hs2_bbp420 with frequency 1S following 3 point median filter INFO 2025-07-24 17:41:39,434 resample.py resample_variable():1031 [1] Resampling hs2_bbp700 with frequency 1S following 3 point median filter INFO 2025-07-24 17:41:39,554 resample.py resample_variable():1031 [1] Resampling hs2_fl700 with frequency 1S following 3 point median filter INFO 2025-07-24 17:41:39,674 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-07-24 17:41:39,787 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-07-24 17:41:39,900 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-07-24 17:41:40,018 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-07-24 17:41:40,133 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-07-24 17:41:40,251 resample.py resample_variable():1031 [1] Resampling ctd1_salinity_onboard with frequency 1S following 3 point median filter INFO 2025-07-24 17:41:40,363 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-07-24 17:41:40,476 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-07-24 17:41:40,592 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-07-24 17:41:40,707 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-07-24 17:41:40,824 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-07-24 17:41:40,947 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-07-24 17:41:41,069 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-07-24 17:41:41,189 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-07-24 17:41:41,308 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-07-24 17:41:41,428 resample.py resample_variable():1031 [1] Resampling ctd2_salinity_onboard with frequency 1S following 3 point median filter INFO 2025-07-24 17:41:41,547 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-07-24 17:41:41,669 resample.py resample_variable():1031 [1] Resampling ctd2_par with frequency 1S following 3 point median filter INFO 2025-07-24 17:41:41,701 resample.py resample_variable():1031 [1] Resampling lopc_countListSum with frequency 1S following 3 point median filter INFO 2025-07-24 17:41:41,718 resample.py resample_variable():1031 [1] Resampling lopc_transCount with frequency 1S following 3 point median filter INFO 2025-07-24 17:41:41,733 resample.py resample_variable():1031 [1] Resampling lopc_nonTransCount with frequency 1S following 3 point median filter INFO 2025-07-24 17:41:41,748 resample.py resample_variable():1031 [1] Resampling lopc_LCcount with frequency 1S following 3 point median filter INFO 2025-07-24 17:41:41,763 resample.py resample_variable():1031 [1] Resampling lopc_flowSpeed with frequency 1S following 3 point median filter INFO 2025-07-24 17:41:42,034 resample.py resample_variable():1031 [1] Resampling ecopuck_bbp700 with frequency 1S following 3 point median filter INFO 2025-07-24 17:41:42,334 resample.py resample_variable():1031 [1] Resampling ecopuck_cdom with frequency 1S following 3 point median filter INFO 2025-07-24 17:41:42,641 resample.py resample_variable():1031 [1] Resampling ecopuck_chl with frequency 1S following 3 point median filter INFO 2025-07-24 17:41:42,805 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-07-24 17:41:43,469 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2025.203.00/dorado_2025.203.00_1S.nc INFO 2025-07-24 17:41:45,846 create_products.py _get_best_ctd():380 [1] ctdToUse = ctd1 INFO 2025-07-24 17:42:07,610 create_products.py gulper_odv():522 [1] Wrote 20 Gulper data lines to /data/auv_data/dorado/missionodvs/2025.203.00/dorado_2025.203.00_1S_Gulper.txt INFO 2025-07-24 17:42:07,611 process.py archive():337 [1] Archiving steps for 2025.203.00 INFO 2025-07-24 17:42:07,612 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2025.203.00/dorado_2025.203.00, BASE_PATH = /data/auv_data INFO 2025-07-24 17:42:07,613 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2025.203.00/dorado_2025.203.00 files to /Volumes/AUVCTD/surveys/2025/netcdf INFO 2025-07-24 17:42:07,615 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2025/netcdf/dorado_2025.203.00_1S.nc INFO 2025-07-24 17:42:07,693 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2025.203.00/dorado_2025.203.00_1S.nc /Volumes/AUVCTD/surveys/2025/netcdf done. INFO 2025-07-24 17:42:07,695 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2025/netcdf/dorado_2025.203.00_cal.nc INFO 2025-07-24 17:42:08,073 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2025.203.00/dorado_2025.203.00_cal.nc /Volumes/AUVCTD/surveys/2025/netcdf done. INFO 2025-07-24 17:42:08,074 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2025/netcdf/dorado_2025.203.00_align.nc INFO 2025-07-24 17:42:08,474 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2025.203.00/dorado_2025.203.00_align.nc /Volumes/AUVCTD/surveys/2025/netcdf done. INFO 2025-07-24 17:42:08,567 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2025.203.00/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2025/2025203/2025.203.00 done. INFO 2025-07-24 17:42:08,672 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2025.203.00/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2025/2025203/2025.203.00 done. INFO 2025-07-24 17:42:08,680 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2025.203.00/gps.nc /Volumes/AUVCTD/missionnetcdfs/2025/2025203/2025.203.00 done. INFO 2025-07-24 17:42:08,759 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2025.203.00/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2025/2025203/2025.203.00 done. INFO 2025-07-24 17:42:09,148 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2025.203.00/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2025/2025203/2025.203.00 done. INFO 2025-07-24 17:42:09,261 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2025.203.00/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2025/2025203/2025.203.00 done. INFO 2025-07-24 17:42:09,346 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2025.203.00/FLBBCD2K.nc /Volumes/AUVCTD/missionnetcdfs/2025/2025203/2025.203.00 done. INFO 2025-07-24 17:42:09,433 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2025.203.00/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2025/2025203/2025.203.00 done. INFO 2025-07-24 17:42:09,682 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2025.203.00/lopc.nc /Volumes/AUVCTD/missionnetcdfs/2025/2025203/2025.203.00 done. INFO 2025-07-24 17:42:09,683 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-07-24 17:42:09,685 archive.py copy_to_AUVTCD():133 [1] Removing /Volumes/AUVCTD/surveys/2025/odv/dorado_2025.203.00_1S_Gulper.txt INFO 2025-07-24 17:42:09,691 archive.py copy_to_AUVTCD():136 [1] copyfile /data/auv_data/dorado/missionodvs/2025.203.00/dorado_2025.203.00_1S_Gulper.txt /Volumes/AUVCTD/surveys/2025/odv done. INFO 2025-07-24 17:42:09,691 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2025.203.00/dorado_2025.203.00_processing.log /Volumes/AUVCTD/surveys/2025/netcdf