INFO 2025-06-27 11:13:29,496 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2015 --end_year 2025 --num_cores 1 -v --noinput --clobber INFO 2025-06-27 11:13:29,496 process.py process_mission():434 [1] dorado_info[mission]["comment"] = Monterey Bay MBTS Mission - 00985G Biolume, ISUS, and LISST payloads removed - ctdToUse = ctd1 INFO 2025-06-27 11:13:29,496 process.py process_mission():449 [1] Processing MBTS Line mission 2025.098.01 by user docker_user on host 355841a7028c INFO 2025-06-27 11:13:29,496 process.py download_process():165 [1] Download and processing steps for 2025.098.01 INFO 2025-06-27 11:13:29,496 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2025/2025098/2025.098.01 INFO 2025-06-27 11:13:29,497 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2025/2025098/2025.098.01 to /data/auv_data/dorado/missionlogs/2025.098.01 INFO 2025-06-27 11:13:40,456 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2025.098.01 INFO 2025-06-27 11:13:40,456 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2025.098.01/ctdDriver.log (34470822 bytes) INFO 2025-06-27 11:13:42,927 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2025.098.01/ctdDriver2.log (34458333 bytes) INFO 2025-06-27 11:13:45,454 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2025.098.01/gps.log (654476 bytes) INFO 2025-06-27 11:13:45,530 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2025.098.01/hydroscatlog.log (30153250 bytes) INFO 2025-06-27 11:13:48,607 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2025.098.01/navigation.log (174105088 bytes) INFO 2025-06-27 11:14:01,893 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2025.098.01/parosci.log (42888758 bytes) INFO 2025-06-27 11:14:05,424 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2025.098.01/FLBBCD2K.log (33683859 bytes) INFO 2025-06-27 11:14:09,693 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/dorado/missionlogs/2025.098.01/FLBBCD2K.log: [ 1 175177 291657 291658] INFO 2025-06-27 11:14:09,806 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2025.098.01/tailCone.log (21545479 bytes) WARNING 2025-06-27 11:14:11,800 logs2netcdfs.py _create_variable():536 [1] rudderCurrent: shape mismatch: objects cannot be broadcast to a single shape. Mismatch is between arg 0 with shape (448854,) and arg 1 with shape (448853,). INFO 2025-06-27 11:14:11,801 logs2netcdfs.py _create_variable():537 [1] len(data) (448853) does not match shape of rudderCurrent.shape[0] (448854) WARNING 2025-06-27 11:14:11,801 logs2netcdfs.py _create_variable():544 [1] rudderCurrent data is short by one, appending the last value: 0.007842999882996082 WARNING 2025-06-27 11:14:11,848 logs2netcdfs.py _create_variable():536 [1] propCurrent1: shape mismatch: objects cannot be broadcast to a single shape. Mismatch is between arg 0 with shape (448854,) and arg 1 with shape (448853,). INFO 2025-06-27 11:14:11,849 logs2netcdfs.py _create_variable():537 [1] len(data) (448853) does not match shape of propCurrent1.shape[0] (448854) WARNING 2025-06-27 11:14:11,849 logs2netcdfs.py _create_variable():544 [1] propCurrent1 data is short by one, appending the last value: 0.0 WARNING 2025-06-27 11:14:11,887 logs2netcdfs.py _create_variable():536 [1] propCurrent2: shape mismatch: objects cannot be broadcast to a single shape. Mismatch is between arg 0 with shape (448854,) and arg 1 with shape (448853,). INFO 2025-06-27 11:14:11,887 logs2netcdfs.py _create_variable():537 [1] len(data) (448853) does not match shape of propCurrent2.shape[0] (448854) WARNING 2025-06-27 11:14:11,887 logs2netcdfs.py _create_variable():544 [1] propCurrent2 data is short by one, appending the last value: 0 WARNING 2025-06-27 11:14:11,916 logs2netcdfs.py _create_variable():536 [1] propRpm: shape mismatch: objects cannot be broadcast to a single shape. Mismatch is between arg 0 with shape (448854,) and arg 1 with shape (448853,). INFO 2025-06-27 11:14:11,916 logs2netcdfs.py _create_variable():537 [1] len(data) (448853) does not match shape of propRpm.shape[0] (448854) WARNING 2025-06-27 11:14:11,916 logs2netcdfs.py _create_variable():544 [1] propRpm data is short by one, appending the last value: 0 WARNING 2025-06-27 11:14:11,954 logs2netcdfs.py _create_variable():536 [1] elevatorAngle: shape mismatch: objects cannot be broadcast to a single shape. Mismatch is between arg 0 with shape (448854,) and arg 1 with shape (448853,). INFO 2025-06-27 11:14:11,954 logs2netcdfs.py _create_variable():537 [1] len(data) (448853) does not match shape of elevatorAngle.shape[0] (448854) WARNING 2025-06-27 11:14:11,954 logs2netcdfs.py _create_variable():544 [1] elevatorAngle data is short by one, appending the last value: -0.10445727407932281 WARNING 2025-06-27 11:14:12,002 logs2netcdfs.py _create_variable():536 [1] rudderAngle: shape mismatch: objects cannot be broadcast to a single shape. Mismatch is between arg 0 with shape (448854,) and arg 1 with shape (448853,). INFO 2025-06-27 11:14:12,002 logs2netcdfs.py _create_variable():537 [1] len(data) (448853) does not match shape of rudderAngle.shape[0] (448854) WARNING 2025-06-27 11:14:12,003 logs2netcdfs.py _create_variable():544 [1] rudderAngle data is short by one, appending the last value: 0.16557469964027405 WARNING 2025-06-27 11:14:12,041 logs2netcdfs.py _create_variable():536 [1] propPwm: shape mismatch: objects cannot be broadcast to a single shape. Mismatch is between arg 0 with shape (448854,) and arg 1 with shape (448853,). INFO 2025-06-27 11:14:12,041 logs2netcdfs.py _create_variable():537 [1] len(data) (448853) does not match shape of propPwm.shape[0] (448854) WARNING 2025-06-27 11:14:12,042 logs2netcdfs.py _create_variable():544 [1] propPwm data is short by one, appending the last value: 0 WARNING 2025-06-27 11:14:12,069 logs2netcdfs.py _create_variable():536 [1] propTemp: shape mismatch: objects cannot be broadcast to a single shape. Mismatch is between arg 0 with shape (448854,) and arg 1 with shape (448853,). INFO 2025-06-27 11:14:12,070 logs2netcdfs.py _create_variable():537 [1] len(data) (448853) does not match shape of propTemp.shape[0] (448854) WARNING 2025-06-27 11:14:12,070 logs2netcdfs.py _create_variable():544 [1] propTemp data is short by one, appending the last value: 0 INFO 2025-06-27 11:14:12,656 logs2netcdfs.py download_process_logs():807 [1] Time to process: 32.20 seconds INFO 2025-06-27 11:14:12,656 process.py download_process():198 [1] Processing file /data/auv_data/dorado/missionlogs/2025.098.01/lopc.bin (100482963 bytes) INFO 2025-06-27 11:14:12,656 lopcToNetCDF.py main():2297 [1] Processing begun: Fri Jun 27 11:14:12 2025 INFO 2025-06-27 11:14:12,657 lopcToNetCDF.py constructTimestampList():1296 [1] parosci_nc = /data/auv_data/dorado/missionnetcdfs/2025.098.01/parosci.nc INFO 2025-06-27 11:14:12,657 lopcToNetCDF.py constructTimestampList():1297 [1] Using NetCDF4 to get start and end epoch seconds for this mission from this URL: INFO 2025-06-27 11:14:12,657 lopcToNetCDF.py constructTimestampList():1300 [1] /data/auv_data/dorado/missionnetcdfs/2025.098.01/parosci.nc INFO 2025-06-27 11:14:12,660 lopcToNetCDF.py constructTimestampList():1317 [1] From associated parosci.nc file: sensor_on_time = 1744133671.3, sensor_off_time = 1744223450.5 INFO 2025-06-27 11:14:12,660 lopcToNetCDF.py constructTimestampList():1322 [1] Duration is 89779 seconds. Expecting to read 179558 L frames from the lopc.bin file. INFO 2025-06-27 11:14:12,660 lopcToNetCDF.py constructTimestampList():1330 [1] recCount not passed in, assuming we'll have 179558 records from the lopc.bin file. INFO 2025-06-27 11:14:13,700 lopcToNetCDF.py main():2321 [1] Examined sibling parosci.nc file to find startTime = 2025-04-08 17:34:31 Z and endTime = 2025-04-09 18:30:50 Z with 179558 records expected to be read from lopc.bin INFO 2025-06-27 11:14:13,700 lopcToNetCDF.py unpackLOPCbin():723 [1] >>> Unpacking LOPC data from /data/auv_data/dorado/missionlogs/2025.098.01/lopc.bin INFO 2025-06-27 11:14:13,700 lopcToNetCDF.py unpackLOPCbin():724 [1] >>> Will write to NetCDF file /data/auv_data/dorado/missionnetcdfs/2025.098.01/lopc.nc WARNING 2025-06-27 11:14:13,700 lopcToNetCDF.py readCframeData():665 [1] Unable to parse a float from the string cstr[:70] = INFO 2025-06-27 11:14:13,701 lopcToNetCDF.py openNetCDFFile():1861 [1] Will output NetCDF file to /data/auv_data/dorado/missionnetcdfs/2025.098.01/lopc.nc INFO 2025-06-27 11:14:13,701 lopcToNetCDF.py openNetCDFFile():1887 [1] missionName = 2025.098.01 INFO 2025-06-27 11:14:13,701 lopcToNetCDF.py openNetCDFFile():1910 [1] Writing bin axis for len(self.dataStructure['binSizeList']) = 994 INFO 2025-06-27 11:14:13,775 lopcToNetCDF.py unpackLOPCbin():951 [1] L Frames sample M Frames ShortLFrame LBeforeMEnd MBeforeLEnd UnknownFrame Garbled L INFO 2025-06-27 11:14:13,775 lopcToNetCDF.py unpackLOPCbin():969 [1] Count Count Count Error Error Error Error Error INFO 2025-06-27 11:14:13,775 lopcToNetCDF.py unpackLOPCbin():987 [1] -------- -------- -------- ----------- ----------- ----------- ----------- ------------ INFO 2025-06-27 11:14:27,289 lopcToNetCDF.py unpackLOPCbin():1013 [1] 10000 10484 37038 0 0 0 0 0 13.6 seconds, last L Frame: 179558 INFO 2025-06-27 11:14:34,271 lopcToNetCDF.py unpackLOPCbin():1013 [1] 20000 20484 55556 0 0 0 0 0 7.0 seconds, last L Frame: 179558 INFO 2025-06-27 11:14:45,255 lopcToNetCDF.py unpackLOPCbin():1013 [1] 30000 30484 86268 0 0 0 0 0 11.0 seconds, last L Frame: 179558 INFO 2025-06-27 11:14:56,027 lopcToNetCDF.py unpackLOPCbin():1013 [1] 40000 40484 115682 0 0 0 0 0 10.8 seconds, last L Frame: 179558 INFO 2025-06-27 11:15:00,808 lopcToNetCDF.py unpackLOPCbin():1013 [1] 50000 50484 127399 0 0 0 0 0 4.8 seconds, last L Frame: 179558 INFO 2025-06-27 11:15:04,593 lopcToNetCDF.py unpackLOPCbin():1013 [1] 60000 60484 135573 0 0 0 0 0 3.8 seconds, last L Frame: 179558 INFO 2025-06-27 11:15:08,363 lopcToNetCDF.py unpackLOPCbin():1013 [1] 70000 4948 143670 0 0 0 0 0 3.8 seconds, last L Frame: 179558 INFO 2025-06-27 11:15:12,292 lopcToNetCDF.py unpackLOPCbin():1013 [1] 80000 14948 152080 0 0 0 0 0 3.9 seconds, last L Frame: 179558 INFO 2025-06-27 11:15:16,024 lopcToNetCDF.py unpackLOPCbin():1013 [1] 90000 24948 159562 0 0 0 0 0 3.7 seconds, last L Frame: 179558 INFO 2025-06-27 11:15:19,803 lopcToNetCDF.py unpackLOPCbin():1013 [1] 100000 34948 167904 0 0 0 0 0 3.8 seconds, last L Frame: 179558 INFO 2025-06-27 11:15:25,043 lopcToNetCDF.py unpackLOPCbin():1013 [1] 110000 44948 179772 0 0 0 0 0 5.2 seconds, last L Frame: 179558 INFO 2025-06-27 11:15:32,869 lopcToNetCDF.py unpackLOPCbin():1013 [1] 120000 54948 199787 0 0 0 0 0 7.8 seconds, last L Frame: 179558 INFO 2025-06-27 11:15:37,845 lopcToNetCDF.py unpackLOPCbin():1013 [1] 130000 64948 212150 0 0 0 0 0 5.0 seconds, last L Frame: 179558 INFO 2025-06-27 11:15:48,066 lopcToNetCDF.py unpackLOPCbin():1013 [1] 140000 9412 240069 0 0 0 0 0 10.2 seconds, last L Frame: 179558 INFO 2025-06-27 11:15:58,005 lopcToNetCDF.py unpackLOPCbin():1013 [1] 150000 19412 266882 0 0 0 0 0 9.9 seconds, last L Frame: 179558 INFO 2025-06-27 11:16:07,835 lopcToNetCDF.py unpackLOPCbin():1013 [1] 160000 29412 293263 0 0 0 0 0 9.8 seconds, last L Frame: 179558 INFO 2025-06-27 11:16:19,952 lopcToNetCDF.py unpackLOPCbin():1013 [1] 170000 39412 325092 0 0 0 0 0 12.1 seconds, last L Frame: 179558 INFO 2025-06-27 11:16:29,526 lopcToNetCDF.py main():2345 [1] >>> Done reading file. INFO 2025-06-27 11:16:29,526 lopcToNetCDF.py main():2346 [1] lFrameCount = 179575, mFrameCount = 349840 INFO 2025-06-27 11:16:29,526 lopcToNetCDF.py constructTimestampList():1296 [1] parosci_nc = /data/auv_data/dorado/missionnetcdfs/2025.098.01/parosci.nc INFO 2025-06-27 11:16:29,526 lopcToNetCDF.py constructTimestampList():1297 [1] Using NetCDF4 to get start and end epoch seconds for this mission from this URL: INFO 2025-06-27 11:16:29,526 lopcToNetCDF.py constructTimestampList():1300 [1] /data/auv_data/dorado/missionnetcdfs/2025.098.01/parosci.nc INFO 2025-06-27 11:16:29,529 lopcToNetCDF.py constructTimestampList():1317 [1] From associated parosci.nc file: sensor_on_time = 1744133671.3, sensor_off_time = 1744223450.5 INFO 2025-06-27 11:16:29,530 lopcToNetCDF.py constructTimestampList():1322 [1] Duration is 89779 seconds. Expecting to read 179558 L frames from the lopc.bin file. INFO 2025-06-27 11:16:29,530 lopcToNetCDF.py constructTimestampList():1330 [1] recCount not passed in, assuming we'll have 179558 records from the lopc.bin file. INFO 2025-06-27 11:16:29,530 lopcToNetCDF.py constructTimestampList():1340 [1] Calling correctSampleCountList() with sampleCountList[0] = 485 and len(sampleCountList) = 179575 INFO 2025-06-27 11:16:29,546 lopcToNetCDF.py correctSampleCountList():1737 [1] Found overflows at indices: [ 65051 130587] INFO 2025-06-27 11:16:29,546 lopcToNetCDF.py correctSampleCountList():1740 [1] Assigning values from slice starting at index 65051, i = 1 INFO 2025-06-27 11:16:29,551 lopcToNetCDF.py correctSampleCountList():1740 [1] Assigning values from slice starting at index 130587, i = 2 INFO 2025-06-27 11:16:29,553 lopcToNetCDF.py correctSampleCountList():1745 [1] Original sampleCountList = [ 485 486 487 ... 180059 180060 180061] INFO 2025-06-27 11:16:29,554 lopcToNetCDF.py correctSampleCountList():1746 [1] Found 0 0 values at indices: [] INFO 2025-06-27 11:16:29,554 lopcToNetCDF.py correctSampleCountList():1779 [1] Found 0 stuck values at indices: [] INFO 2025-06-27 11:16:29,554 lopcToNetCDF.py deSpike():1588 [1] d_sampleCountList = [1 1 1 ... 1 1 1] INFO 2025-06-27 11:16:29,555 lopcToNetCDF.py deSpike():1590 [1] Found 0 spike indicators at indices: [] INFO 2025-06-27 11:16:29,555 lopcToNetCDF.py correctSampleCountList():1805 [1] After despike() sampleCountList = [ 485 486 487 ... 180059 180060 180061] INFO 2025-06-27 11:16:29,555 lopcToNetCDF.py constructTimestampList():1347 [1] correctSampleCountList() returned correctedSampleCountList = [ 485 486 487 ... 180059 180060 180061] with len(correctedSampleCountList) = 179575 INFO 2025-06-27 11:16:29,555 lopcToNetCDF.py constructTimestampList():1358 [1] Subtracting 485 from all values of correctedSampleCountList INFO 2025-06-27 11:16:29,555 lopcToNetCDF.py constructTimestampList():1363 [1] Constructing timestampArray from instrument corrected sampleCount and constant deltaT = 0.500000 INFO 2025-06-27 11:16:29,556 lopcToNetCDF.py constructTimestampList():1368 [1] New re-zeroed correctedSampleCountList = [0.00000e+00 5.00000e-01 1.00000e+00 ... 8.97870e+04 8.97875e+04 8.97880e+04] INFO 2025-06-27 11:16:29,557 lopcToNetCDF.py constructTimestampList():1379 [1] timestampArray = [1.74413367e+09 1.74413367e+09 1.74413367e+09 ... 1.74422346e+09 1.74422346e+09 1.74422346e+09] INFO 2025-06-27 11:16:29,557 lopcToNetCDF.py constructTimestampList():1380 [1] timestampArray[:2] = [1744133671.3 1744133671.8, ..., timestampArray[-2:] = 1744223458.8 1744223459.3] INFO 2025-06-27 11:16:29,737 lopcToNetCDF.py constructTimestampList():1389 [1] timestampList[:2] = [np.float64(1744133671.306895), np.float64(1744133671.806895)], ..., timestampList[-2:] = [np.float64(1744223458.806895), np.float64(1744223459.306895)]] INFO 2025-06-27 11:16:29,738 lopcToNetCDF.py constructTimestampList():1394 [1] Subsampling correctedSampleCountList (len = 179575) according to what got written to the netCDF file by the binning interval INFO 2025-06-27 11:16:29,738 lopcToNetCDF.py constructTimestampList():1399 [1] lFrameCountWrittenList[:2] = [20, 41], ... lFrameCountWrittenList[-2:] = [179549, 179570] INFO 2025-06-27 11:16:29,739 lopcToNetCDF.py constructTimestampList():1420 [1] len(subSampledCorrectedSampleCountList) = 8551 INFO 2025-06-27 11:16:29,739 lopcToNetCDF.py constructTimestampList():1439 [1] len(timestampList) = 179575 INFO 2025-06-27 11:16:29,739 lopcToNetCDF.py constructTimestampList():1440 [1] timestampList[:2] = [np.float64(1744133671.306895), np.float64(1744133671.806895)], ..., timestampList[-2:] = [np.float64(1744223458.806895), np.float64(1744223459.306895)]] INFO 2025-06-27 11:16:29,739 lopcToNetCDF.py constructTimestampList():1446 [1] Subsampling timestampList (len = 179575) according to what got written to the netCDF file by the binning interval INFO 2025-06-27 11:16:29,741 lopcToNetCDF.py constructTimestampList():1457 [1] Taking indices [[np.int32(19), np.int32(40)] ... [np.int32(179548), np.int32(179569)]] from timestampList to create subSampledTimestampList INFO 2025-06-27 11:16:29,749 lopcToNetCDF.py constructTimestampList():1463 [1] len(subSampledTimestampList) = 8551 INFO 2025-06-27 11:16:29,751 lopcToNetCDF.py constructTimestampList():1477 [1] Finding elements of cFrameEsecsList that != -9999 INFO 2025-06-27 11:16:29,792 lopcToNetCDF.py closeNetCDFFile():2096 [1] Writing time axis for len(tsList) = 8551 INFO 2025-06-27 11:16:29,792 lopcToNetCDF.py closeNetCDFFile():2099 [1] tsList[:1] = [np.float64(1744133680.806895)], ..., tsList[-2:] = [np.float64(1744223446.306895), np.float64(1744223456.806895)] INFO 2025-06-27 11:16:29,793 lopcToNetCDF.py closeNetCDFFile():2100 [1] Begin time = 2025-04-08 17:34:40 Z INFO 2025-06-27 11:16:29,793 lopcToNetCDF.py closeNetCDFFile():2103 [1] End time = 2025-04-09 18:30:56 Z INFO 2025-06-27 11:16:29,793 lopcToNetCDF.py closeNetCDFFile():2107 [1] Writing time axis for len(cFrameEsecsList) = 8551 INFO 2025-06-27 11:16:29,793 lopcToNetCDF.py closeNetCDFFile():2111 [1] cFrameEsecsList[:1] = [1.74413391e+09], ..., cFrameEsecsList[-2:] = [1.74415814e+09 1.74415815e+09] INFO 2025-06-27 11:16:29,793 lopcToNetCDF.py closeNetCDFFile():2116 [1] Begin time = 2025-04-08 17:38:28 Z INFO 2025-06-27 11:16:29,793 lopcToNetCDF.py closeNetCDFFile():2120 [1] End time = 2025-04-09 00:22:29 Z INFO 2025-06-27 11:16:29,798 lopcToNetCDF.py main():2381 [1] Created file: /data/auv_data/dorado/missionnetcdfs/2025.098.01/lopc.nc INFO 2025-06-27 11:16:29,798 lopcToNetCDF.py main():2384 [1] Processing finished: Fri Jun 27 11:16:29 2025 Elapsed processing time from start of processing = 137 seconds INFO 2025-06-27 11:16:29,804 process.py calibrate():227 [1] Calibration steps for 2025.098.01 INFO 2025-06-27 11:16:30,424 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-06-27 11:16:30,426 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-06-27 11:16:32,121 calibrate.py _nudge_pos():1806 [1] 199: 0.200 0.0028764 -0.0016968 7315 24.38 17.507 -12.896 2025-04-08T18:01:59.114012416 INFO 2025-06-27 11:16:34,833 calibrate.py _nudge_pos():1806 [1] 464: 0.050 0.0027448 -0.0049666 14956 49.85 8.172 -18.461 2025-04-08T18:56:14.511002624 INFO 2025-06-27 11:16:37,848 calibrate.py _nudge_pos():1806 [1] 756: 0.180 -0.0000369 -0.0042981 12511 41.70 -0.131 -19.099 2025-04-08T19:42:47.709655296 INFO 2025-06-27 11:16:40,578 calibrate.py _nudge_pos():1806 [1] 1017: 0.050 0.0006333 -0.0039239 12656 42.18 2.228 -17.236 2025-04-08T20:29:18.908445184 INFO 2025-06-27 11:16:43,036 calibrate.py _nudge_pos():1806 [1] 1257: 0.060 0.0006480 -0.0046841 14151 47.17 2.040 -18.402 2025-04-08T21:20:28.108190464 INFO 2025-06-27 11:16:45,473 calibrate.py _nudge_pos():1806 [1] 1492: 0.080 -0.0004919 -0.0043968 12366 41.22 -1.772 -19.767 2025-04-08T22:05:35.312734464 INFO 2025-06-27 11:16:48,029 calibrate.py _nudge_pos():1806 [1] 1735: 0.090 -0.0000305 0.0000738 20 0.06 -71.555 215.956 2025-04-08T22:09:41.305882624 INFO 2025-06-27 11:16:48,095 calibrate.py _nudge_pos():1806 [1] 1741: 0.060 -0.0002029 -0.0055369 12426 41.42 -0.727 -24.772 2025-04-08T22:51:12.505223680 INFO 2025-06-27 11:16:50,953 calibrate.py _nudge_pos():1806 [1] 2013: 0.070 -0.0000429 -0.0063243 12951 43.17 -0.148 -27.148 2025-04-08T23:38:54.709149440 INFO 2025-06-27 11:16:54,140 calibrate.py _nudge_pos():1806 [1] 2314: 0.060 0.0007950 -0.0074666 12451 41.50 2.845 -33.339 2025-04-09T00:25:24.908007680 INFO 2025-06-27 11:16:56,904 calibrate.py _nudge_pos():1806 [1] 2573: 0.080 -0.0018828 -0.0108370 14411 48.03 -5.822 -41.806 2025-04-09T01:17:45.112889088 INFO 2025-06-27 11:16:59,845 calibrate.py _nudge_pos():1806 [1] 2849: 0.080 -0.0026159 -0.0075505 12415 41.38 -9.390 -33.808 2025-04-09T02:03:43.313939456 INFO 2025-06-27 11:17:01,298 calibrate.py _nudge_pos():1806 [1] 2983: 0.090 -0.0000239 -0.0000563 35 0.11 -31.238 -91.980 2025-04-09T02:06:03.314348544 INFO 2025-06-27 11:17:02,325 calibrate.py _nudge_pos():1806 [1] 3078: 0.080 -0.0033423 -0.0073476 12316 41.05 -12.096 -33.167 2025-04-09T02:48:40.509168640 INFO 2025-06-27 11:17:02,337 calibrate.py _nudge_pos():1806 [1] 3079: 0.080 -0.0000114 0.0000183 20 0.06 -26.834 53.565 2025-04-09T02:48:44.508894720 INFO 2025-06-27 11:17:04,698 calibrate.py _nudge_pos():1806 [1] 3296: 0.070 0.0000291 0.0000202 15 0.05 92.614 80.237 2025-04-09T02:52:24.513823232 INFO 2025-06-27 11:17:04,838 calibrate.py _nudge_pos():1806 [1] 3309: 0.050 -0.0031003 -0.0044307 11171 37.23 -12.371 -22.050 2025-04-09T03:29:50.709948416 INFO 2025-06-27 11:17:04,850 calibrate.py _nudge_pos():1806 [1] 3310: 0.050 -0.0000085 0.0000195 25 0.08 -15.722 45.162 2025-04-09T03:29:55.709605888 INFO 2025-06-27 11:17:08,020 calibrate.py _nudge_pos():1806 [1] 3604: 0.030 -0.0014801 -0.0047647 12211 40.70 -5.403 -21.693 2025-04-09T04:15:31.912163328 INFO 2025-06-27 11:17:10,621 calibrate.py _nudge_pos():1806 [1] 3844: 0.160 -0.0008752 -0.0008913 4970 16.56 -7.851 -9.972 2025-04-09T04:36:04.907697152 INFO 2025-06-27 11:17:11,247 calibrate.py _nudge_pos():1806 [1] 3901: 0.170 -0.0001006 -0.0002712 1410 4.70 -3.181 -10.698 2025-04-09T04:41:43.914473472 INFO 2025-06-27 11:17:11,610 calibrate.py _nudge_pos():1806 [1] 3934: 0.060 -0.0014564 0.0011223 6611 22.03 -9.821 9.439 2025-04-09T05:04:18.111704832 INFO 2025-06-27 11:17:13,530 calibrate.py _nudge_pos():1806 [1] 4107: 0.130 -0.0024220 -0.0097865 19471 64.90 -5.545 -27.942 2025-04-09T06:12:04.313150976 INFO 2025-06-27 11:17:15,336 calibrate.py _nudge_pos():1806 [1] 4271: 0.180 0.0001394 -0.0133155 19152 63.84 0.324 -38.651 2025-04-09T07:18:37.709584384 INFO 2025-06-27 11:17:16,953 calibrate.py _nudge_pos():1806 [1] 4420: 0.130 0.0029293 -0.0168554 19440 64.80 6.716 -48.199 2025-04-09T08:25:53.913085696 INFO 2025-06-27 11:17:18,645 calibrate.py _nudge_pos():1806 [1] 4573: 0.190 0.0063530 -0.0141267 17301 57.67 16.365 -45.393 2025-04-09T09:26:06.105633536 INFO 2025-06-27 11:17:20,466 calibrate.py _nudge_pos():1806 [1] 4731: 0.200 0.0045052 -0.0118739 14635 48.78 13.718 -45.105 2025-04-09T10:17:30.314350592 INFO 2025-06-27 11:17:20,573 calibrate.py _nudge_pos():1806 [1] 4740: 0.200 -0.0000398 -0.0000080 40 0.13 -45.419 -11.436 2025-04-09T10:17:47.313186048 INFO 2025-06-27 11:17:20,724 calibrate.py _nudge_pos():1806 [1] 4753: 0.010 -0.0000212 -0.0000014 101 0.33 -9.435 -0.777 2025-04-09T10:18:19.510980608 INFO 2025-06-27 11:17:22,102 calibrate.py _nudge_pos():1806 [1] 4872: 0.020 0.0040349 -0.0097349 13946 46.48 12.891 -38.807 2025-04-09T11:06:46.711823616 INFO 2025-06-27 11:17:23,922 calibrate.py _nudge_pos():1806 [1] 5033: 0.030 0.0031260 -0.0082626 13210 44.03 10.542 -34.771 2025-04-09T11:53:28.909859840 INFO 2025-06-27 11:17:25,637 calibrate.py _nudge_pos():1806 [1] 5187: 0.020 0.0034865 -0.0068800 12371 41.23 12.555 -30.918 2025-04-09T12:37:16.109884160 INFO 2025-06-27 11:17:26,151 calibrate.py _nudge_pos():1806 [1] 5233: 0.050 0.0012979 0.0002112 3215 10.71 17.987 3.654 2025-04-09T12:48:44.112752896 INFO 2025-06-27 11:17:26,907 calibrate.py _nudge_pos():1806 [1] 5301: 0.160 0.0009736 0.0003971 6020 20.06 7.205 3.668 2025-04-09T13:09:56.105615360 INFO 2025-06-27 11:17:29,855 calibrate.py _nudge_pos():1806 [1] 5561: 0.190 0.0029875 -0.0071355 14561 48.53 9.139 -27.243 2025-04-09T14:02:47.308373248 INFO 2025-06-27 11:17:32,594 calibrate.py _nudge_pos():1806 [1] 5802: 0.190 0.0045239 -0.0074050 12915 43.05 15.601 -31.876 2025-04-09T14:49:50.504971008 INFO 2025-06-27 11:17:35,576 calibrate.py _nudge_pos():1806 [1] 6068: 0.030 0.0053693 -0.0080054 13271 44.23 18.017 -33.536 2025-04-09T15:38:30.904909824 INFO 2025-06-27 11:17:38,379 calibrate.py _nudge_pos():1806 [1] 6312: 0.200 0.0053119 -0.0072726 12070 40.23 19.595 -33.498 2025-04-09T16:22:47.912892416 INFO 2025-06-27 11:17:38,547 calibrate.py _nudge_pos():1806 [1] 6326: 0.200 -0.0000150 -0.0000316 160 0.53 -4.208 -11.054 2025-04-09T16:23:33.909741312 INFO 2025-06-27 11:17:40,852 calibrate.py _nudge_pos():1806 [1] 6529: 0.130 0.0043314 -0.0037696 7300 24.33 26.417 -28.709 2025-04-09T16:51:16.105873152 INFO 2025-06-27 11:17:41,933 calibrate.py _nudge_pos():1806 [1] 6623: 0.150 0.0000377 -0.0027221 2310 7.70 0.727 -65.537 2025-04-09T17:00:31.107853056 INFO 2025-06-27 11:17:42,282 calibrate.py _nudge_pos():1806 [1] 6653: 0.170 -0.0000464 0.0000094 30 0.10 -71.219 18.084 2025-04-09T17:01:06.105455360 INFO 2025-06-27 11:17:42,786 calibrate.py _nudge_pos():1806 [1] 6698: 0.040 0.0016237 0.0001346 5861 19.53 12.334 1.277 2025-04-09T17:21:22.312139520 INFO 2025-06-27 11:17:42,932 calibrate.py _nudge_pos():1806 [1] 6711: 0.030 -0.0000155 -0.0000194 35 0.11 -20.262 -31.702 2025-04-09T17:21:41.310838016 INFO 2025-06-27 11:17:43,619 calibrate.py _nudge_pos():1806 [1] 6772: 0.200 0.0012091 -0.0037480 8915 29.71 6.038 -23.373 2025-04-09T17:52:24.304584192 INFO 2025-06-27 11:18:10,171 calibrate.py _nudge_pos():1862 [1] 9030: - - - 5 0.01 - - INFO 2025-06-27 11:18:10,172 calibrate.py _nudge_pos():1868 [1] Points in final series = 448370 INFO 2025-06-27 11:18:14,189 calibrate.py _geometric_depth_correction():3423 [1] hs2: d_beg_time_diff: -9 seconds, d_end_time_diff: 0 seconds INFO 2025-06-27 11:18:17,599 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 9 seconds, d_end_time_diff: 0 seconds INFO 2025-06-27 11:18:20,234 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 9 seconds, d_end_time_diff: 0 seconds INFO 2025-06-27 11:18:20,238 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2025.098.01/ctd1.nc INFO 2025-06-27 11:18:20,240 calibrate.py _range_qc_combined_nc():898 [1] Setting 3 ctd1_salinity values to NaN INFO 2025-06-27 11:18:20,240 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-06-27 11:18:20,241 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1 INFO 2025-06-27 11:18:23,503 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 41 seconds, d_end_time_diff: -1 seconds INFO 2025-06-27 11:18:26,323 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 41 seconds, d_end_time_diff: -1 seconds INFO 2025-06-27 11:18:26,329 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2025.098.01/ctd2.nc INFO 2025-06-27 11:18:26,330 calibrate.py _range_qc_combined_nc():898 [1] Setting 8 ctd2_salinity values to NaN INFO 2025-06-27 11:18:26,331 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-06-27 11:18:26,331 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2 ERROR 2025-06-27 11:18:26,331 calibrate.py process_logs():3542 [1] Error processing isus: isus has no orig_data - likely a missing or zero-sized .log file in missionlogs/2025.098.01 ERROR 2025-06-27 11:18:26,331 calibrate.py process_logs():3542 [1] Error processing biolume: biolume has no orig_data - likely a missing or zero-sized .log file in missionlogs/2025.098.01 INFO 2025-06-27 11:19:11,345 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2025.098.01/dorado_2025.098.01_cal.nc INFO 2025-06-27 11:19:11,666 calibrate.py write_netcdf():3512 [1] Data variables written: ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_salinity_onboard, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_par, ctd2_salinity, ctd2_salinity_onboard, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, ecopuck_bbp700, ecopuck_cdom, ecopuck_chl, ecopuck_time, gps_latitude, gps_longitude, gps_time, hs2_bbp420, hs2_bbp700, hs2_depth, hs2_fl700, hs2_time, lopc_LCcount, lopc_countListSum, lopc_flowSpeed, lopc_nonTransCount, lopc_time, lopc_transCount, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, tailcone_propRpm, tailcone_time, time INFO 2025-06-27 11:19:11,673 process.py align():251 [1] Alignment steps for 2025.098.01 INFO 2025-06-27 11:19:11,730 align.py process_cal():139 [1] Processing dorado_2025.098.01_cal.nc from /data/auv_data/dorado/missionnetcdfs/2025.098.01 INFO 2025-06-27 11:19:11,842 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-27 11:19:11,853 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-06-27 11:19:12,143 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-27 11:19:12,160 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-06-27 11:19:12,431 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-27 11:19:12,451 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-06-27 11:19:12,613 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-06-27 11:19:12,613 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-06-27 11:19:12,725 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-27 11:19:12,740 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-06-27 11:19:13,003 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2025.098.01_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-27 11:19:13,016 align.py process_cal():249 [1] hs2_bbp420: instrument_sample_rate_hz = 4.00 INFO 2025-06-27 11:19:13,247 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2025.098.01_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-27 11:19:13,260 align.py process_cal():249 [1] hs2_bbp700: instrument_sample_rate_hz = 4.00 INFO 2025-06-27 11:19:13,496 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2025.098.01_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-27 11:19:13,508 align.py process_cal():249 [1] hs2_fl700: instrument_sample_rate_hz = 4.00 INFO 2025-06-27 11:19:13,738 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2025.098.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-27 11:19:13,750 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-27 11:19:13,985 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2025.098.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-27 11:19:13,998 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-27 11:19:14,228 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2025.098.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-27 11:19:14,240 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-27 11:19:14,477 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2025.098.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-27 11:19:14,490 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-27 11:19:14,720 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2025.098.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-27 11:19:14,732 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-27 11:19:14,962 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2025.098.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-27 11:19:14,974 align.py process_cal():249 [1] ctd1_salinity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-27 11:19:15,205 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2025.098.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-27 11:19:15,220 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 4.00 INFO 2025-06-27 11:19:15,456 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2025.098.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-27 11:19:15,468 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 4.00 INFO 2025-06-27 11:19:15,700 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2025.098.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-27 11:19:15,712 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 4.00 INFO 2025-06-27 11:19:15,946 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2025.098.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-27 11:19:15,959 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 4.00 INFO 2025-06-27 11:19:16,192 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2025.098.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-27 11:19:16,203 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-27 11:19:16,437 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2025.098.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-27 11:19:16,449 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-27 11:19:16,683 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2025.098.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-27 11:19:16,695 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-27 11:19:16,929 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2025.098.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-27 11:19:16,942 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-27 11:19:17,173 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2025.098.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-27 11:19:17,186 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-27 11:19:17,421 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2025.098.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-27 11:19:17,433 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-27 11:19:17,667 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2025.098.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-27 11:19:17,680 align.py process_cal():249 [1] ctd2_salinity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-27 11:19:17,917 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2025.098.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-27 11:19:17,932 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 4.00 INFO 2025-06-27 11:19:18,163 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2025.098.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-27 11:19:18,174 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-27 11:19:18,409 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2025.098.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-27 11:19:18,423 align.py process_cal():249 [1] ctd2_par: instrument_sample_rate_hz = 4.00 INFO 2025-06-27 11:19:18,710 align.py process_cal():249 [1] lopc_countListSum: instrument_sample_rate_hz = 0.10 INFO 2025-06-27 11:19:18,871 align.py process_cal():249 [1] lopc_transCount: instrument_sample_rate_hz = 0.10 INFO 2025-06-27 11:19:19,032 align.py process_cal():249 [1] lopc_nonTransCount: instrument_sample_rate_hz = 0.10 INFO 2025-06-27 11:19:19,192 align.py process_cal():249 [1] lopc_LCcount: instrument_sample_rate_hz = 0.10 INFO 2025-06-27 11:19:19,353 align.py process_cal():249 [1] lopc_flowSpeed: instrument_sample_rate_hz = 0.10 INFO 2025-06-27 11:19:19,531 align.py process_cal():249 [1] ecopuck_bbp700: instrument_sample_rate_hz = 10.42 INFO 2025-06-27 11:19:20,113 align.py process_cal():249 [1] ecopuck_cdom: instrument_sample_rate_hz = 10.42 INFO 2025-06-27 11:19:20,624 align.py process_cal():249 [1] ecopuck_chl: instrument_sample_rate_hz = 10.42 INFO 2025-06-27 11:19:21,178 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 5.00 INFO 2025-06-27 11:19:21,354 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2025.098.01/dorado_2025.098.01_align.nc INFO 2025-06-27 11:19:21,617 align.py write_netcdf():342 [1] Data variables written: ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_salinity_onboard, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_par, ctd2_salinity, ctd2_salinity_onboard, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, ecopuck_bbp700, ecopuck_cdom, ecopuck_chl, ecopuck_depth, ecopuck_latitude, ecopuck_longitude, ecopuck_time, hs2_bbp420, hs2_bbp700, hs2_depth, hs2_fl700, hs2_latitude, hs2_longitude, hs2_time, lopc_LCcount, lopc_countListSum, lopc_depth, lopc_flowSpeed, lopc_latitude, lopc_longitude, lopc_nonTransCount, lopc_time, lopc_transCount, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-06-27 11:19:21,620 process.py resample():273 [1] Resampling steps for 2025.098.01 INFO 2025-06-27 11:19:21,621 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-06-27 11:19:21,667 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2025.098.01/dorado_2025.098.01_align.nc mission netCDF file INFO 2025-06-27 11:19:21,680 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2025.098.01/dorado_2025.098.01_align.nc mission netCDF file INFO 2025-06-27 11:19:21,683 resample.py get_mission_start_end():1145 [1] navigation: 2025-04-08T17:35:06.744467456 to 2025-04-09T18:30:50.506598656 (0 days 00:00:06.300296448 before mission_end) INFO 2025-06-27 11:19:21,687 resample.py get_mission_start_end():1145 [1] hs2 : 2025-04-08T17:34:22.847474688 to 2025-04-09T18:30:50.556595200 (0 days 00:00:06.250299904 before mission_end) INFO 2025-06-27 11:19:21,690 resample.py get_mission_start_end():1145 [1] ctd1 : 2025-04-08T17:34:40.486266368 to 2025-04-09T18:30:50.566594560 (0 days 00:00:06.240300544 before mission_end) INFO 2025-06-27 11:19:21,693 resample.py get_mission_start_end():1145 [1] ctd2 : 2025-04-08T17:35:12.794053120 to 2025-04-09T18:30:50.436603392 (0 days 00:00:06.370291712 before mission_end) INFO 2025-06-27 11:19:21,695 resample.py get_mission_start_end():1145 [1] lopc : 2025-04-08T17:34:40.806895104 to 2025-04-09T18:30:56.806895104 (0 days 00:00:00 before mission_end) INFO 2025-06-27 11:19:21,699 resample.py get_mission_start_end():1145 [1] ecopuck : 2025-04-08T17:34:16.517908224 to 2025-04-09T18:30:50.576593920 (0 days 00:00:06.230301184 before mission_end) INFO 2025-06-27 11:19:21,703 resample.py get_mission_start_end():1145 [1] tailcone : 2025-04-08T17:34:25.907265024 to 2025-04-09T18:30:37.897462272 (0 days 00:00:18.909432832 before mission_end) INFO 2025-06-27 11:19:21,704 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2025.098.01/dorado_2025.098.01_align.nc mission netCDF file INFO 2025-06-27 11:19:21,705 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-06-27 11:19:22,609 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-06-27 11:19:22,752 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-06-27 11:19:22,888 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-06-27 11:19:23,026 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-06-27 11:19:23,144 resample.py resample_variable():1031 [1] Resampling hs2_bbp420 with frequency 1S following 3 point median filter INFO 2025-06-27 11:19:23,267 resample.py resample_variable():1031 [1] Resampling hs2_bbp700 with frequency 1S following 3 point median filter INFO 2025-06-27 11:19:23,387 resample.py resample_variable():1031 [1] Resampling hs2_fl700 with frequency 1S following 3 point median filter INFO 2025-06-27 11:19:23,504 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-06-27 11:19:23,614 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-06-27 11:19:23,732 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-06-27 11:19:23,841 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-27 11:19:23,951 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-27 11:19:24,061 resample.py resample_variable():1031 [1] Resampling ctd1_salinity_onboard with frequency 1S following 3 point median filter INFO 2025-06-27 11:19:24,171 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-06-27 11:19:24,282 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-06-27 11:19:24,392 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-06-27 11:19:24,503 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-06-27 11:19:24,616 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-06-27 11:19:24,734 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-06-27 11:19:24,857 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-06-27 11:19:24,972 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-27 11:19:25,089 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-27 11:19:25,204 resample.py resample_variable():1031 [1] Resampling ctd2_salinity_onboard with frequency 1S following 3 point median filter INFO 2025-06-27 11:19:25,319 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-06-27 11:19:25,435 resample.py resample_variable():1031 [1] Resampling ctd2_par with frequency 1S following 3 point median filter INFO 2025-06-27 11:19:25,464 resample.py resample_variable():1031 [1] Resampling lopc_countListSum with frequency 1S following 3 point median filter INFO 2025-06-27 11:19:25,483 resample.py resample_variable():1031 [1] Resampling lopc_transCount with frequency 1S following 3 point median filter INFO 2025-06-27 11:19:25,499 resample.py resample_variable():1031 [1] Resampling lopc_nonTransCount with frequency 1S following 3 point median filter INFO 2025-06-27 11:19:25,515 resample.py resample_variable():1031 [1] Resampling lopc_LCcount with frequency 1S following 3 point median filter INFO 2025-06-27 11:19:25,532 resample.py resample_variable():1031 [1] Resampling lopc_flowSpeed with frequency 1S following 3 point median filter INFO 2025-06-27 11:19:25,784 resample.py resample_variable():1031 [1] Resampling ecopuck_bbp700 with frequency 1S following 3 point median filter INFO 2025-06-27 11:19:26,069 resample.py resample_variable():1031 [1] Resampling ecopuck_cdom with frequency 1S following 3 point median filter INFO 2025-06-27 11:19:26,352 resample.py resample_variable():1031 [1] Resampling ecopuck_chl with frequency 1S following 3 point median filter INFO 2025-06-27 11:19:26,512 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-06-27 11:19:27,149 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2025.098.01/dorado_2025.098.01_1S.nc INFO 2025-06-27 11:19:30,266 create_products.py _get_best_ctd():380 [1] ctdToUse = ctd1 INFO 2025-06-27 11:19:52,496 create_products.py gulper_odv():522 [1] Wrote 20 Gulper data lines to /data/auv_data/dorado/missionodvs/2025.098.01/dorado_2025.098.01_1S_Gulper.txt INFO 2025-06-27 11:19:52,497 process.py archive():337 [1] Archiving steps for 2025.098.01 INFO 2025-06-27 11:19:52,497 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2025.098.01/dorado_2025.098.01, BASE_PATH = /data/auv_data INFO 2025-06-27 11:19:52,499 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2025.098.01/dorado_2025.098.01 files to /Volumes/AUVCTD/surveys/2025/netcdf INFO 2025-06-27 11:19:52,500 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2025/netcdf/dorado_2025.098.01_1S.nc INFO 2025-06-27 11:19:52,572 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2025.098.01/dorado_2025.098.01_1S.nc /Volumes/AUVCTD/surveys/2025/netcdf done. INFO 2025-06-27 11:19:52,573 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2025/netcdf/dorado_2025.098.01_cal.nc INFO 2025-06-27 11:19:53,008 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2025.098.01/dorado_2025.098.01_cal.nc /Volumes/AUVCTD/surveys/2025/netcdf done. INFO 2025-06-27 11:19:53,009 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2025/netcdf/dorado_2025.098.01_align.nc INFO 2025-06-27 11:19:53,481 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2025.098.01/dorado_2025.098.01_align.nc /Volumes/AUVCTD/surveys/2025/netcdf done. INFO 2025-06-27 11:19:53,595 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2025.098.01/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2025/2025098/2025.098.01 done. INFO 2025-06-27 11:19:53,699 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2025.098.01/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2025/2025098/2025.098.01 done. INFO 2025-06-27 11:19:53,712 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2025.098.01/gps.nc /Volumes/AUVCTD/missionnetcdfs/2025/2025098/2025.098.01 done. INFO 2025-06-27 11:19:53,809 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2025.098.01/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2025/2025098/2025.098.01 done. INFO 2025-06-27 11:19:54,245 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2025.098.01/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2025/2025098/2025.098.01 done. INFO 2025-06-27 11:19:54,375 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2025.098.01/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2025/2025098/2025.098.01 done. INFO 2025-06-27 11:19:54,475 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2025.098.01/FLBBCD2K.nc /Volumes/AUVCTD/missionnetcdfs/2025/2025098/2025.098.01 done. INFO 2025-06-27 11:19:54,601 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2025.098.01/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2025/2025098/2025.098.01 done. INFO 2025-06-27 11:19:54,922 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2025.098.01/lopc.nc /Volumes/AUVCTD/missionnetcdfs/2025/2025098/2025.098.01 done. INFO 2025-06-27 11:19:54,922 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-06-27 11:19:54,924 archive.py copy_to_AUVTCD():133 [1] Removing /Volumes/AUVCTD/surveys/2025/odv/dorado_2025.098.01_1S_Gulper.txt INFO 2025-06-27 11:19:54,932 archive.py copy_to_AUVTCD():136 [1] copyfile /data/auv_data/dorado/missionodvs/2025.098.01/dorado_2025.098.01_1S_Gulper.txt /Volumes/AUVCTD/surveys/2025/odv done. INFO 2025-06-27 11:19:54,933 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2025.098.01/dorado_2025.098.01_processing.log /Volumes/AUVCTD/surveys/2025/netcdf