INFO 2025-10-21 18:32:26,293 process.py process_mission():429 [1] commandline = /src/data/process_i2map.py -v --noinput --start_year 2023 --end_year 2023 --start_yd 1 --end_yd 365 --num_cores 1 --clobber INFO 2025-10-21 18:32:26,293 process.py process_mission():449 [1] Processing i2map mission 2023.352.01 by user docker_user on host a6fbce5c76fd INFO 2025-10-21 18:32:26,294 process.py download_process():165 [1] Download and processing steps for 2023.352.01 INFO 2025-10-21 18:32:26,294 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/M3/master/i2MAP/2023/12/20231218/2023.352.01 INFO 2025-10-21 18:32:26,296 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/M3/master/i2MAP/2023/12/20231218/2023.352.01 to /data/auv_data/i2map/missionlogs/2023.352.01 INFO 2025-10-21 18:32:29,347 logs2netcdfs.py download_process_logs():779 [1] Processing mission: i2map 2023.352.01 INFO 2025-10-21 18:32:29,347 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/i2map/missionlogs/2023.352.01/gps.log (942260 bytes) INFO 2025-10-21 18:32:29,564 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/i2map/missionlogs/2023.352.01/navigation.log (142175244 bytes) INFO 2025-10-21 18:32:43,201 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/i2map/missionlogs/2023.352.01/parosci.log (39962678 bytes) INFO 2025-10-21 18:32:46,891 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/i2map/missionlogs/2023.352.01/parosci.log: [352258 352259 395948 395949 439639 712706 712707] INFO 2025-10-21 18:32:47,016 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/i2map/missionlogs/2023.352.01/seabird25p.log (80192648 bytes) INFO 2025-10-21 18:32:52,953 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/i2map/missionlogs/2023.352.01/seabird25p.log: [ 1 7920 655353 ... 664089 664090 664091] INFO 2025-10-21 18:32:53,274 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/i2map/missionlogs/2023.352.01/tailCone.log (20079211 bytes) INFO 2025-10-21 18:32:56,007 logs2netcdfs.py download_process_logs():807 [1] Time to process: 26.66 seconds INFO 2025-10-21 18:32:56,007 process.py calibrate():227 [1] Calibration steps for 2023.352.01 INFO 2025-10-21 18:32:56,496 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-10-21 18:32:56,499 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-10-21 18:32:57,754 calibrate.py _nudge_pos():1806 [1] 113: 0.190 -0.0014684 0.0027010 32655 108.85 -2.004 4.598 2023-12-18T18:51:55.254175232 INFO 2025-10-21 18:32:58,483 calibrate.py _nudge_pos():1806 [1] 158: 0.150 -0.0002496 0.0001650 3145 10.48 -3.538 2.918 2023-12-18T19:03:08.248071936 INFO 2025-10-21 18:32:58,803 calibrate.py _nudge_pos():1806 [1] 180: 0.060 0.0026504 0.0023117 36638 122.12 3.224 3.508 2023-12-18T21:05:37.854589440 INFO 2025-10-21 18:33:00,726 calibrate.py _nudge_pos():1806 [1] 291: 0.150 0.0006453 0.0006334 2945 9.81 9.769 11.961 2023-12-18T21:17:16.846705152 INFO 2025-10-21 18:33:01,228 calibrate.py _nudge_pos():1806 [1] 324: 0.120 0.0000239 0.0000162 15 0.05 76.071 64.352 2023-12-18T21:17:51.854306816 INFO 2025-10-21 18:33:01,245 calibrate.py _nudge_pos():1806 [1] 325: 0.110 0.0000272 0.0000067 15 0.05 86.751 26.757 2023-12-18T21:17:54.854101504 INFO 2025-10-21 18:33:01,329 calibrate.py _nudge_pos():1806 [1] 330: 0.160 0.0004592 0.0006589 2475 8.25 8.273 14.805 2023-12-18T21:26:13.849917952 INFO 2025-10-21 18:33:01,380 calibrate.py _nudge_pos():1806 [1] 333: 0.180 0.0000532 0.0000167 115 0.38 20.814 8.120 2023-12-18T21:26:38.848205312 INFO 2025-10-21 18:33:02,747 calibrate.py _nudge_pos():1806 [1] 427: 0.010 0.0004854 0.0005153 2581 8.60 8.386 11.102 2023-12-18T21:36:48.056471808 INFO 2025-10-21 18:33:03,207 calibrate.py _nudge_pos():1806 [1] 457: 0.060 0.0047260 0.0059473 32726 109.09 6.436 10.102 2023-12-18T23:26:23.456026112 INFO 2025-10-21 18:33:03,663 calibrate.py _nudge_pos():1806 [1] 489: 0.080 0.0000255 -0.0000288 30 0.10 39.222 -55.250 2023-12-18T23:27:00.453491712 INFO 2025-10-21 18:33:03,681 calibrate.py _nudge_pos():1806 [1] 490: 0.140 -0.0003927 0.0012805 4420 14.73 -3.961 16.108 2023-12-18T23:41:44.452933632 INFO 2025-10-21 18:33:04,066 calibrate.py _nudge_pos():1806 [1] 513: 0.150 0.0008403 0.0031180 36738 122.46 1.020 4.718 2023-12-19T01:44:34.048081664 INFO 2025-10-21 18:33:05,415 calibrate.py _nudge_pos():1806 [1] 602: 0.170 -0.0008736 0.0017779 3650 12.16 -10.671 27.085 2023-12-19T01:58:12.052044544 INFO 2025-10-21 18:33:05,615 calibrate.py _nudge_pos():1806 [1] 614: 0.200 -0.0005240 0.0010342 2645 8.81 -8.833 21.743 2023-12-19T02:07:12.055051776 INFO 2025-10-21 18:33:06,426 calibrate.py _nudge_pos():1806 [1] 666: 0.030 -0.0005591 0.0007969 2086 6.95 -11.952 21.246 2023-12-19T02:15:00.252978176 INFO 2025-10-21 18:33:07,256 calibrate.py _nudge_pos():1806 [1] 716: 0.010 -0.0044111 0.0108920 14146 47.15 -13.898 42.805 2023-12-19T03:02:58.455807744 INFO 2025-10-21 18:33:08,225 calibrate.py _nudge_pos():1806 [1] 775: 0.010 -0.0021168 0.0064586 14286 47.62 -6.604 25.134 2023-12-19T03:51:33.656102656 INFO 2025-10-21 18:33:09,187 calibrate.py _nudge_pos():1806 [1] 843: 0.070 -0.0002085 0.0001312 280 0.93 -33.316 26.144 2023-12-19T03:53:36.647677184 INFO 2025-10-21 18:33:10,016 calibrate.py _nudge_pos():1806 [1] 895: 0.160 -0.0013516 0.0029301 7975 26.58 -7.555 20.427 2023-12-19T04:21:02.654917888 INFO 2025-10-21 18:33:10,033 calibrate.py _nudge_pos():1806 [1] 896: 0.130 -0.0000434 0.0000585 50 0.16 -39.486 66.394 2023-12-19T04:21:12.654233088 INFO 2025-10-21 18:33:11,258 calibrate.py _nudge_pos():1806 [1] 972: 0.190 -0.0001147 0.0001169 300 1.00 -17.100 21.729 2023-12-19T04:23:27.654984704 INFO 2025-10-21 18:33:11,683 calibrate.py _nudge_pos():1806 [1] 998: 0.020 -0.0006484 0.0008610 3066 10.22 -9.430 15.617 2023-12-19T04:34:05.851265536 INFO 2025-10-21 18:33:12,851 calibrate.py _nudge_pos():1806 [1] 1070: 0.030 -0.0002011 0.0003564 1511 5.03 -5.936 13.123 2023-12-19T04:40:18.855712768 INFO 2025-10-21 18:33:12,904 calibrate.py _nudge_pos():1806 [1] 1073: 0.030 -0.0000087 -0.0000165 25 0.08 -16.090 -38.238 2023-12-19T04:40:26.855164672 INFO 2025-10-21 18:33:13,714 calibrate.py _nudge_pos():1806 [1] 1122: 0.060 -0.0003645 0.0005215 1955 6.51 -8.315 14.835 2023-12-19T04:47:45.855091456 INFO 2025-10-21 18:33:13,945 calibrate.py _nudge_pos():1806 [1] 1138: 0.110 -0.0003748 0.0005705 1965 6.55 -8.505 16.147 2023-12-19T04:54:33.847141888 INFO 2025-10-21 18:33:21,437 calibrate.py _nudge_pos():1806 [1] 1564: 0.180 -0.0005524 0.0005340 2335 7.78 -10.550 12.718 2023-12-19T05:09:25.856035072 INFO 2025-10-21 18:33:22,125 calibrate.py _nudge_pos():1806 [1] 1610: 0.200 -0.0004191 0.0004883 1850 6.16 -10.103 14.679 2023-12-19T05:16:20.847606272 INFO 2025-10-21 18:33:22,280 calibrate.py _nudge_pos():1806 [1] 1623: 0.060 -0.0028603 0.0048421 32123 107.07 -3.969 8.380 2023-12-19T07:03:37.446669056 INFO 2025-10-21 18:33:23,101 calibrate.py _nudge_pos():1806 [1] 1691: 0.040 0.0002260 0.0010445 4086 13.62 2.466 14.214 2023-12-19T07:18:21.656096512 INFO 2025-10-21 18:33:23,616 calibrate.py _nudge_pos():1806 [1] 1727: 0.050 0.0018655 0.0019989 36498 121.66 2.278 3.045 2023-12-19T09:20:36.053655808 INFO 2025-10-21 18:33:23,739 calibrate.py _nudge_pos():1806 [1] 1734: 0.020 0.0000155 0.0000142 20 0.06 36.246 41.524 2023-12-19T09:20:46.052971008 INFO 2025-10-21 18:33:24,280 calibrate.py _nudge_pos():1806 [1] 1765: 0.090 0.0011408 0.0006856 3300 11.00 15.413 11.552 2023-12-19T09:32:18.055565312 INFO 2025-10-21 18:33:24,785 calibrate.py _nudge_pos():1806 [1] 1794: 0.070 0.0000068 -0.0000090 15 0.05 21.595 -35.879 2023-12-19T09:32:49.053442048 INFO 2025-10-21 18:33:24,822 calibrate.py _nudge_pos():1806 [1] 1796: 0.140 0.0005954 0.0005897 2615 8.71 10.152 12.541 2023-12-19T09:41:33.047545856 INFO 2025-10-21 18:33:25,165 calibrate.py _nudge_pos():1806 [1] 1815: 0.190 0.0005172 0.0004481 2230 7.43 10.342 11.176 2023-12-19T09:49:17.055759104 INFO 2025-10-21 18:33:25,954 calibrate.py _nudge_pos():1806 [1] 1878: 0.030 0.0032449 0.0071086 32667 108.89 4.427 12.097 2023-12-19T11:39:12.653929728 INFO 2025-10-21 18:33:26,031 calibrate.py _nudge_pos():1806 [1] 1884: 0.020 0.0001127 0.0000593 80 0.26 63.562 41.750 2023-12-19T11:39:34.652422656 INFO 2025-10-21 18:33:26,612 calibrate.py _nudge_pos():1806 [1] 1923: 0.040 0.0000128 0.0000145 20 0.06 30.075 42.402 2023-12-19T11:40:16.649545728 INFO 2025-10-21 18:33:31,515 calibrate.py _nudge_pos():1806 [1] 2213: 0.200 0.0012189 0.0025789 9690 32.30 5.607 14.796 2023-12-19T12:17:23.646985984 INFO 2025-10-21 18:33:31,590 calibrate.py _nudge_pos():1806 [1] 2218: 0.010 -0.0000331 0.0000443 61 0.20 -24.592 41.004 2023-12-19T12:17:39.855875584 INFO 2025-10-21 18:33:31,923 calibrate.py _nudge_pos():1806 [1] 2238: 0.140 0.0012150 0.0022120 9566 31.88 5.662 12.856 2023-12-19T12:49:51.853524736 INFO 2025-10-21 18:33:31,977 calibrate.py _nudge_pos():1806 [1] 2241: 0.140 -0.0000091 -0.0000087 60 0.20 -6.879 -8.180 2023-12-19T12:50:05.852565504 INFO 2025-10-21 18:33:37,262 calibrate.py _nudge_pos():1806 [1] 2566: 0.190 0.0000399 0.0012381 3425 11.41 0.519 20.101 2023-12-19T13:06:54.853444352 INFO 2025-10-21 18:33:37,817 calibrate.py _nudge_pos():1806 [1] 2601: 0.020 0.0004546 0.0006382 1925 6.41 10.532 18.439 2023-12-19T13:13:54.054727168 INFO 2025-10-21 18:33:38,858 calibrate.py _nudge_pos():1806 [1] 2668: 0.070 -0.0000148 0.0010831 2145 7.15 -0.307 28.082 2023-12-19T13:22:09.050817536 INFO 2025-10-21 18:35:46,520 calibrate.py _nudge_pos():1806 [1] 11112: 0.080 -0.0000280 0.0000088 15 0.05 -89.208 34.878 2023-12-19T15:42:57.652048640 INFO 2025-10-21 18:35:52,788 calibrate.py _nudge_pos():1806 [1] 11526: 0.110 0.0000142 0.0000201 15 0.05 45.216 79.629 2023-12-19T15:49:53.653550592 INFO 2025-10-21 18:36:16,664 calibrate.py _nudge_pos():1862 [1] 13037: - - - 2 0.00 - - INFO 2025-10-21 18:36:16,665 calibrate.py _nudge_pos():1868 [1] Points in final series = 417476 INFO 2025-10-21 18:37:22,931 calibrate.py _read_oxy_coeffs():1189 [1] Looking for calibration file for O2 sensor serial number 2510 on port side INFO 2025-10-21 18:37:22,934 calibrate.py _read_oxy_coeffs():1219 [1] Executing: find "/Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files" -name "2510" INFO 2025-10-21 18:37:23,210 calibrate.py _read_oxy_coeffs():1238 [1] Found calibration date dirs: 2013_Jan 2014_sep 2016_Jan 2018_apr 2019_Jun 2022_Jun 2025_Jan WARNING 2025-10-21 18:37:23,216 calibrate.py _cal_date_xml_files():1081 [1] Found 8 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/2510/2013_Jan INFO 2025-10-21 18:37:23,216 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-21 18:37:23,221 calibrate.py _cal_date_xml_files():1081 [1] Found 8 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/2510/2014_sep INFO 2025-10-21 18:37:23,221 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-21 18:37:23,227 calibrate.py _cal_date_xml_files():1081 [1] Found 8 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/2510/2016_Jan INFO 2025-10-21 18:37:23,227 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-21 18:37:23,232 calibrate.py _cal_date_xml_files():1081 [1] Found 8 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/2510/2018_apr INFO 2025-10-21 18:37:23,232 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-21 18:37:23,238 calibrate.py _cal_date_xml_files():1081 [1] Found 8 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/2510/2019_Jun INFO 2025-10-21 18:37:23,238 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-21 18:37:23,244 calibrate.py _cal_date_xml_files():1081 [1] Found 8 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/2510/2022_Jun INFO 2025-10-21 18:37:23,244 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-21 18:37:23,251 calibrate.py _cal_date_xml_files():1081 [1] Found 8 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/2510/2025_Jan INFO 2025-10-21 18:37:23,251 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} INFO 2025-10-21 18:37:23,258 calibrate.py _read_oxy_coeffs():1247 [1] File /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/2510/2025_Jan/Oxygen_SBE43_2510.xml has CalibrationDate 2024-12-24 00:00:00+00:00 INFO 2025-10-21 18:37:23,258 calibrate.py _read_oxy_coeffs():1253 [1] Breaking from loop as /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/2510/2025_Jan/Oxygen_SBE43_2510.xml is after 2023.352.01 with mission_start=2023-12-18T17:02:30.923862784 INFO 2025-10-21 18:37:23,258 calibrate.py _read_oxy_coeffs():1270 [1] File /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/2510/2025_Jan/Oxygen_SBE43_2510.xml is the first calibration file, but is after 2023.352.01 with mission_start=2023-12-18T17:02:30.923862784 INFO 2025-10-21 18:37:38,872 calibrate.py _calibrated_oxygen():2513 [1] dissolvedO2_port: parsed from /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/2510/2025_Jan/Oxygen_SBE43_2510.xml file: {'Soc': 0.58626, 'offset': -0.517, 'A': -0.0038384, 'B': 0.00019113, 'C': -3.1968e-06, 'D0': 2.5826, 'D1': 0.000192634, 'D2': -0.0464803, 'E': 0.036, 'Tau20': 1.65, 'H1': -0.033, 'H2': 5000.0, 'H3': 1450.0} INFO 2025-10-21 18:37:38,883 calibrate.py _read_oxy_coeffs():1189 [1] Looking for calibration file for O2 sensor serial number 3968 on stbd side INFO 2025-10-21 18:37:38,883 calibrate.py _read_oxy_coeffs():1219 [1] Executing: find "/Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files" -name "3968" INFO 2025-10-21 18:37:39,119 calibrate.py _read_oxy_coeffs():1238 [1] Found calibration date dirs: 2020_Jul 2025_Jan WARNING 2025-10-21 18:37:39,124 calibrate.py _cal_date_xml_files():1081 [1] Found 3 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/3968/2020_Jul INFO 2025-10-21 18:37:39,124 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-21 18:37:39,130 calibrate.py _cal_date_xml_files():1081 [1] Found 3 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/3968/2025_Jan INFO 2025-10-21 18:37:39,130 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} INFO 2025-10-21 18:37:39,136 calibrate.py _read_oxy_coeffs():1247 [1] File /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/3968/2020_Jul/SBE43_3968.xml has CalibrationDate 2020-06-16 00:00:00+00:00 INFO 2025-10-21 18:37:39,137 calibrate.py _read_oxy_coeffs():1263 [1] File /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/3968/2020_Jul/SBE43_3968.xml is just before 2023.352.01 with mission_start=2023-12-18T17:02:30.923862784 INFO 2025-10-21 18:37:56,036 calibrate.py _calibrated_oxygen():2513 [1] dissolvedO2_stbd: parsed from /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/3968/2020_Jul/SBE43_3968.xml file: {'Soc': 0.43332, 'offset': -0.5106, 'A': -0.0037655, 'B': 0.00018802, 'C': -3.038e-06, 'D0': 2.5826, 'D1': 0.000192634, 'D2': -0.0464803, 'E': 0.036, 'Tau20': 1.54, 'H1': -0.033, 'H2': 5000.0, 'H3': 1450.0} INFO 2025-10-21 18:38:18,377 calibrate.py _geometric_depth_correction():3423 [1] seabird25p: d_beg_time_diff: 65 seconds, d_end_time_diff: -1 seconds INFO 2025-10-21 18:38:24,513 calibrate.py _geometric_depth_correction():3423 [1] seabird25p: d_beg_time_diff: 65 seconds, d_end_time_diff: -1 seconds INFO 2025-10-21 18:38:24,523 calibrate.py _ctd_process():2919 [1] Performing range checking of ['seabird25p_salinity'] in 2023.352.01/seabird25p.nc WARNING 2025-10-21 18:38:24,526 calibrate.py _range_qc_combined_nc():890 [1] More than 500 (1129) seabird25p_salinity values found outside of range. This may indicate a problem with the seabird25p data. INFO 2025-10-21 18:38:24,526 calibrate.py _range_qc_combined_nc():898 [1] Setting 1129 seabird25p_salinity values to NaN INFO 2025-10-21 18:38:24,526 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('seabird25p_salinity', Range(min=30, max=40))] INFO 2025-10-21 18:38:24,526 calibrate.py _range_qc_combined_nc():936 [1] Done range checking seabird25p INFO 2025-10-21 18:38:25,042 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/i2map/missionnetcdfs/2023.352.01/i2map_2023.352.01_cal.nc INFO 2025-10-21 18:39:42,242 calibrate.py write_netcdf():3512 [1] Data variables written: depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, seabird25p_beam_transmittance, seabird25p_conductivity, seabird25p_conductivity_onboard, seabird25p_depth, seabird25p_dissolvedO2_port, seabird25p_dissolvedO2_stbd, seabird25p_oxygen_mll_port, seabird25p_oxygen_mll_stbd, seabird25p_oxygen_umolkg_port, seabird25p_oxygen_umolkg_stbd, seabird25p_par, seabird25p_salinity, seabird25p_salinity_onboard, seabird25p_temperature, seabird25p_temperature_onboard, seabird25p_time, tailcone_propRpm, tailcone_time, time INFO 2025-10-21 18:39:42,245 process.py align():251 [1] Alignment steps for 2023.352.01 INFO 2025-10-21 18:39:42,296 align.py process_cal():139 [1] Processing i2map_2023.352.01_cal.nc from /data/auv_data/i2map/missionnetcdfs/2023.352.01 INFO 2025-10-21 18:39:42,441 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-10-21 18:39:42,455 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-10-21 18:39:42,806 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-10-21 18:39:42,821 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-10-21 18:39:43,096 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-10-21 18:39:43,117 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-10-21 18:39:43,325 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-10-21 18:39:43,325 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-10-21 18:39:43,461 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-10-21 18:39:43,478 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-10-21 18:39:43,856 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2023.352.01_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 18:39:43,883 align.py process_cal():249 [1] seabird25p_temperature: instrument_sample_rate_hz = 7.89 INFO 2025-10-21 18:39:44,330 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2023.352.01_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 18:39:44,361 align.py process_cal():249 [1] seabird25p_conductivity: instrument_sample_rate_hz = 7.89 INFO 2025-10-21 18:39:44,833 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2023.352.01_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 18:39:44,863 align.py process_cal():249 [1] seabird25p_salinity: instrument_sample_rate_hz = 7.89 INFO 2025-10-21 18:39:45,350 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2023.352.01_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 18:39:45,381 align.py process_cal():249 [1] seabird25p_temperature_onboard: instrument_sample_rate_hz = 7.89 INFO 2025-10-21 18:39:45,855 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2023.352.01_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 18:39:45,891 align.py process_cal():249 [1] seabird25p_conductivity_onboard: instrument_sample_rate_hz = 7.89 INFO 2025-10-21 18:39:46,282 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2023.352.01_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 18:39:46,305 align.py process_cal():249 [1] seabird25p_salinity_onboard: instrument_sample_rate_hz = 7.89 INFO 2025-10-21 18:39:46,774 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2023.352.01_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 18:39:46,802 align.py process_cal():249 [1] seabird25p_dissolvedO2_port: instrument_sample_rate_hz = 7.89 INFO 2025-10-21 18:39:47,229 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2023.352.01_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 18:39:47,251 align.py process_cal():249 [1] seabird25p_oxygen_mll_port: instrument_sample_rate_hz = 7.89 INFO 2025-10-21 18:39:47,701 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2023.352.01_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 18:39:47,722 align.py process_cal():249 [1] seabird25p_oxygen_umolkg_port: instrument_sample_rate_hz = 7.89 INFO 2025-10-21 18:39:48,085 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2023.352.01_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 18:39:48,120 align.py process_cal():249 [1] seabird25p_dissolvedO2_stbd: instrument_sample_rate_hz = 7.89 INFO 2025-10-21 18:39:48,613 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2023.352.01_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 18:39:48,641 align.py process_cal():249 [1] seabird25p_oxygen_mll_stbd: instrument_sample_rate_hz = 7.89 INFO 2025-10-21 18:39:49,119 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2023.352.01_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 18:39:49,146 align.py process_cal():249 [1] seabird25p_oxygen_umolkg_stbd: instrument_sample_rate_hz = 7.89 INFO 2025-10-21 18:39:49,615 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2023.352.01_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 18:39:49,642 align.py process_cal():249 [1] seabird25p_beam_transmittance: instrument_sample_rate_hz = 7.89 INFO 2025-10-21 18:39:50,114 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2023.352.01_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 18:39:50,140 align.py process_cal():249 [1] seabird25p_depth: instrument_sample_rate_hz = 7.89 INFO 2025-10-21 18:39:50,656 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2023.352.01_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 18:39:50,692 align.py process_cal():249 [1] seabird25p_par: instrument_sample_rate_hz = 7.89 INFO 2025-10-21 18:39:51,195 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 5.00 INFO 2025-10-21 18:39:51,402 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/i2map/missionnetcdfs/2023.352.01/i2map_2023.352.01_align.nc INFO 2025-10-21 18:39:51,578 align.py write_netcdf():342 [1] Data variables written: navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, seabird25p_beam_transmittance, seabird25p_conductivity, seabird25p_conductivity_onboard, seabird25p_depth, seabird25p_dissolvedO2_port, seabird25p_dissolvedO2_stbd, seabird25p_latitude, seabird25p_longitude, seabird25p_oxygen_mll_port, seabird25p_oxygen_mll_stbd, seabird25p_oxygen_umolkg_port, seabird25p_oxygen_umolkg_stbd, seabird25p_par, seabird25p_salinity, seabird25p_salinity_onboard, seabird25p_temperature, seabird25p_temperature_onboard, seabird25p_time, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-10-21 18:39:51,580 process.py resample():273 [1] Resampling steps for 2023.352.01 INFO 2025-10-21 18:39:51,580 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-10-21 18:39:51,608 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/i2map/missionnetcdfs/2023.352.01/i2map_2023.352.01_align.nc mission netCDF file INFO 2025-10-21 18:39:51,615 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/i2map/missionnetcdfs/2023.352.01/i2map_2023.352.01_align.nc mission netCDF file INFO 2025-10-21 18:39:51,619 resample.py get_mission_start_end():1145 [1] navigation: 2023-12-18T17:01:50.686619136 to 2023-12-19T16:15:42.247464704 (0 days 00:00:00 before mission_end) INFO 2025-10-21 18:39:51,624 resample.py get_mission_start_end():1145 [1] seabird25p: 2023-12-18T17:02:30.923862784 to 2023-12-19T16:15:42.177469440 (0 days 00:00:00.069995264 before mission_end) INFO 2025-10-21 18:39:51,629 resample.py get_mission_start_end():1145 [1] tailcone : 2023-12-18T17:01:20.928657408 to 2023-12-19T16:15:42.127472896 (0 days 00:00:00.119991808 before mission_end) INFO 2025-10-21 18:39:51,630 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/i2map/missionnetcdfs/2023.352.01/i2map_2023.352.01_align.nc mission netCDF file INFO 2025-10-21 18:39:51,631 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-10-21 18:39:52,945 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-10-21 18:39:53,105 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-10-21 18:39:53,264 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-10-21 18:39:53,416 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-10-21 18:39:53,604 resample.py resample_variable():1031 [1] Resampling seabird25p_temperature with frequency 1S following 3 point median filter INFO 2025-10-21 18:39:53,796 resample.py resample_variable():1031 [1] Resampling seabird25p_conductivity with frequency 1S following 3 point median filter INFO 2025-10-21 18:39:54,016 resample.py resample_variable():1031 [1] Resampling seabird25p_salinity with frequency 1S following 3 point median filter INFO 2025-10-21 18:39:54,245 resample.py resample_variable():1031 [1] Resampling seabird25p_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-10-21 18:39:54,476 resample.py resample_variable():1031 [1] Resampling seabird25p_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-10-21 18:39:54,675 resample.py resample_variable():1031 [1] Resampling seabird25p_salinity_onboard with frequency 1S following 3 point median filter INFO 2025-10-21 18:39:54,863 resample.py resample_variable():1031 [1] Resampling seabird25p_dissolvedO2_port with frequency 1S following 3 point median filter INFO 2025-10-21 18:39:55,052 resample.py resample_variable():1031 [1] Resampling seabird25p_oxygen_mll_port with frequency 1S following 3 point median filter INFO 2025-10-21 18:39:55,241 resample.py resample_variable():1031 [1] Resampling seabird25p_oxygen_umolkg_port with frequency 1S following 3 point median filter INFO 2025-10-21 18:39:55,429 resample.py resample_variable():1031 [1] Resampling seabird25p_dissolvedO2_stbd with frequency 1S following 3 point median filter INFO 2025-10-21 18:39:55,655 resample.py resample_variable():1031 [1] Resampling seabird25p_oxygen_mll_stbd with frequency 1S following 3 point median filter INFO 2025-10-21 18:39:55,893 resample.py resample_variable():1031 [1] Resampling seabird25p_oxygen_umolkg_stbd with frequency 1S following 3 point median filter INFO 2025-10-21 18:39:56,152 resample.py resample_variable():1031 [1] Resampling seabird25p_beam_transmittance with frequency 1S following 3 point median filter INFO 2025-10-21 18:39:56,418 resample.py resample_variable():1031 [1] Resampling seabird25p_par with frequency 1S following 3 point median filter INFO 2025-10-21 18:39:56,601 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-10-21 18:39:57,436 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/i2map/missionnetcdfs/2023.352.01/i2map_2023.352.01_1S.nc INFO 2025-10-21 18:39:57,438 process.py archive():337 [1] Archiving steps for 2023.352.01 INFO 2025-10-21 18:39:57,438 process.py archive():347 [1] nc_file_base = /data/auv_data/i2map/missionnetcdfs/2023.352.01/i2map_2023.352.01, BASE_PATH = /data/auv_data INFO 2025-10-21 18:39:57,440 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/i2map/missionnetcdfs/2023.352.01/i2map_2023.352.01 files to /Volumes/AUVCTD/surveys/2023/netcdf INFO 2025-10-21 18:39:57,442 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2023/netcdf/i2map_2023.352.01_1S.nc INFO 2025-10-21 18:39:57,510 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2023.352.01/i2map_2023.352.01_1S.nc /Volumes/AUVCTD/surveys/2023/netcdf done. INFO 2025-10-21 18:39:57,512 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2023/netcdf/i2map_2023.352.01_cal.nc INFO 2025-10-21 18:39:57,991 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2023.352.01/i2map_2023.352.01_cal.nc /Volumes/AUVCTD/surveys/2023/netcdf done. INFO 2025-10-21 18:39:57,992 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2023/netcdf/i2map_2023.352.01_align.nc INFO 2025-10-21 18:39:58,486 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2023.352.01/i2map_2023.352.01_align.nc /Volumes/AUVCTD/surveys/2023/netcdf done. INFO 2025-10-21 18:39:58,519 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2023.352.01/gps.nc /Volumes/AUVCTD/missionnetcdfs/2023/2023352/2023.352.01 done. INFO 2025-10-21 18:39:58,970 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2023.352.01/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2023/2023352/2023.352.01 done. INFO 2025-10-21 18:39:59,094 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2023.352.01/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2023/2023352/2023.352.01 done. INFO 2025-10-21 18:39:59,416 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2023.352.01/seabird25p.nc /Volumes/AUVCTD/missionnetcdfs/2023/2023352/2023.352.01 done. INFO 2025-10-21 18:39:59,507 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2023.352.01/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2023/2023352/2023.352.01 done. INFO 2025-10-21 18:39:59,507 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-10-21 18:39:59,508 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2023.352.01/i2map_2023.352.01_processing.log /Volumes/AUVCTD/surveys/2023/netcdf