INFO 2025-10-21 17:42:01,243 process.py process_mission():429 [1] commandline = /src/data/process_i2map.py -v --noinput --start_year 2022 --end_year 2022 --start_yd 1 --end_yd 365 --num_cores 1 --clobber INFO 2025-10-21 17:42:01,243 process.py process_mission():449 [1] Processing i2map mission 2022.234.00 by user docker_user on host cb88459c7ecc INFO 2025-10-21 17:42:01,244 process.py download_process():165 [1] Download and processing steps for 2022.234.00 INFO 2025-10-21 17:42:01,244 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/M3/master/i2MAP/2022/08/20220822/2022.234.00 INFO 2025-10-21 17:42:01,244 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/M3/master/i2MAP/2022/08/20220822/2022.234.00 to /data/auv_data/i2map/missionlogs/2022.234.00 INFO 2025-10-21 17:42:03,647 logs2netcdfs.py download_process_logs():779 [1] Processing mission: i2map 2022.234.00 INFO 2025-10-21 17:42:03,648 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/i2map/missionlogs/2022.234.00/gps.log (1915340 bytes) INFO 2025-10-21 17:42:03,861 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/i2map/missionlogs/2022.234.00/navigation.log (168253584 bytes) INFO 2025-10-21 17:42:16,990 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/i2map/missionlogs/2022.234.00/parosci.log (47302454 bytes) INFO 2025-10-21 17:42:20,840 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/i2map/missionlogs/2022.234.00/parosci.log: [2050 2051] INFO 2025-10-21 17:42:20,981 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/i2map/missionlogs/2022.234.00/seabird25p.log (94989488 bytes) INFO 2025-10-21 17:42:27,328 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/i2map/missionlogs/2022.234.00/seabird25p.log: [ 1 629966] INFO 2025-10-21 17:42:27,672 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/i2map/missionlogs/2022.234.00/tailCone.log (23766571 bytes) INFO 2025-10-21 17:42:30,639 logs2netcdfs.py download_process_logs():807 [1] Time to process: 26.99 seconds INFO 2025-10-21 17:42:30,640 process.py calibrate():227 [1] Calibration steps for 2022.234.00 INFO 2025-10-21 17:42:31,272 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-10-21 17:42:31,274 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-10-21 17:42:32,495 calibrate.py _nudge_pos():1806 [1] 141: 0.190 -0.0005919 0.0066790 32517 108.39 -0.811 11.419 2022-08-22T17:55:10.160000000 INFO 2025-10-21 17:42:34,278 calibrate.py _nudge_pos():1806 [1] 304: 0.060 -0.0013151 0.0006282 4830 16.10 -12.139 7.232 2022-08-22T18:13:58.352713472 INFO 2025-10-21 17:42:34,456 calibrate.py _nudge_pos():1806 [1] 320: 0.040 0.0007917 0.0039974 37277 124.26 0.947 5.961 2022-08-22T20:18:28.960941824 INFO 2025-10-21 17:42:34,829 calibrate.py _nudge_pos():1806 [1] 353: 0.010 -0.0000070 -0.0000177 20 0.06 -16.396 -51.933 2022-08-22T20:19:04.958475776 INFO 2025-10-21 17:42:35,474 calibrate.py _nudge_pos():1806 [1] 411: 0.080 -0.0008348 0.0012231 4300 14.33 -8.656 15.816 2022-08-22T20:34:22.955588608 INFO 2025-10-21 17:42:35,756 calibrate.py _nudge_pos():1806 [1] 436: 0.130 -0.0004187 0.0005306 2305 7.68 -8.100 12.802 2022-08-22T20:42:27.962363392 INFO 2025-10-21 17:42:36,023 calibrate.py _nudge_pos():1806 [1] 460: 0.150 -0.0001516 0.0003826 1910 6.36 -3.540 11.140 2022-08-22T20:49:13.954551040 INFO 2025-10-21 17:42:36,321 calibrate.py _nudge_pos():1806 [1] 487: 0.030 0.0016006 0.0080154 32618 108.72 2.187 13.661 2022-08-22T22:38:23.555872768 INFO 2025-10-21 17:42:37,041 calibrate.py _nudge_pos():1806 [1] 551: 0.110 -0.0004790 0.0013831 5305 17.68 -4.025 14.496 2022-08-22T22:57:07.558873088 INFO 2025-10-21 17:42:37,054 calibrate.py _nudge_pos():1806 [1] 552: 0.110 0.0016813 0.0034437 37603 125.34 1.993 5.091 2022-08-23T01:02:28.153677056 INFO 2025-10-21 17:42:38,152 calibrate.py _nudge_pos():1806 [1] 647: 0.130 0.0012806 0.0015623 3820 12.73 14.946 22.742 2022-08-23T01:16:47.154831360 INFO 2025-10-21 17:42:38,348 calibrate.py _nudge_pos():1806 [1] 664: 0.170 0.0006169 0.0007569 2955 9.85 9.308 14.244 2022-08-23T01:26:54.153249280 INFO 2025-10-21 17:42:38,475 calibrate.py _nudge_pos():1806 [1] 675: 0.170 -0.0000359 0.0000408 20 0.06 -84.028 119.078 2022-08-23T01:27:08.162289664 INFO 2025-10-21 17:42:38,962 calibrate.py _nudge_pos():1806 [1] 717: 0.200 0.0005783 0.0007767 2315 7.71 11.138 18.658 2022-08-23T01:35:32.157763584 INFO 2025-10-21 17:42:39,877 calibrate.py _nudge_pos():1806 [1] 796: 0.090 0.0053597 0.0129454 17991 59.97 13.277 40.002 2022-08-23T02:36:48.555912960 INFO 2025-10-21 17:42:40,067 calibrate.py _nudge_pos():1806 [1] 812: 0.060 0.0054421 0.0047985 14456 48.18 16.780 18.454 2022-08-23T03:25:14.756824576 INFO 2025-10-21 17:42:40,821 calibrate.py _nudge_pos():1806 [1] 876: 0.090 0.0000461 -0.0000129 335 1.11 6.149 -2.142 2022-08-23T03:27:26.757782016 INFO 2025-10-21 17:42:41,285 calibrate.py _nudge_pos():1806 [1] 915: 0.180 0.0013150 0.0008083 5365 17.88 10.927 8.377 2022-08-23T03:45:57.761672960 INFO 2025-10-21 17:42:41,852 calibrate.py _nudge_pos():1806 [1] 963: 0.200 -0.0000009 0.0000192 15 0.05 -2.726 76.148 2022-08-23T03:46:48.758179328 INFO 2025-10-21 17:42:41,888 calibrate.py _nudge_pos():1806 [1] 966: 0.180 -0.0000422 0.0000136 15 0.05 -134.251 54.105 2022-08-23T03:46:53.757836800 INFO 2025-10-21 17:42:42,018 calibrate.py _nudge_pos():1806 [1] 977: 0.010 -0.0000028 -0.0003509 291 0.97 -0.433 -67.271 2022-08-23T03:48:02.953096704 INFO 2025-10-21 17:42:42,220 calibrate.py _nudge_pos():1806 [1] 994: 0.180 0.0000292 -0.0000194 25 0.08 54.327 -45.025 2022-08-23T03:48:23.761671424 INFO 2025-10-21 17:42:42,291 calibrate.py _nudge_pos():1806 [1] 1000: 0.180 0.0000447 -0.0000649 39 0.13 52.434 -94.941 2022-08-23T03:48:36.760780800 INFO 2025-10-21 17:42:42,316 calibrate.py _nudge_pos():1806 [1] 1002: 0.020 0.0005047 0.0002531 2396 7.98 9.393 5.875 2022-08-23T03:56:36.957884928 INFO 2025-10-21 17:42:43,095 calibrate.py _nudge_pos():1806 [1] 1068: 0.050 0.0004729 -0.0000828 1390 4.63 15.175 -3.315 2022-08-23T04:02:19.954388224 INFO 2025-10-21 17:42:43,477 calibrate.py _nudge_pos():1806 [1] 1100: 0.100 0.0005733 0.0001406 2040 6.80 12.533 3.833 2022-08-23T04:09:38.954314496 INFO 2025-10-21 17:42:43,840 calibrate.py _nudge_pos():1806 [1] 1130: 0.110 0.0005049 -0.0001598 2020 6.73 11.148 -4.400 2022-08-23T04:16:51.954652160 INFO 2025-10-21 17:43:33,068 calibrate.py _nudge_pos():1806 [1] 5225: 0.100 0.0048490 0.0007900 6315 21.05 34.230 6.955 2022-08-23T05:46:11.357507584 INFO 2025-10-21 17:43:33,985 calibrate.py _nudge_pos():1806 [1] 5302: 0.150 0.0001820 0.0004844 3860 12.86 2.102 6.978 2022-08-23T06:00:19.359415552 INFO 2025-10-21 17:43:34,069 calibrate.py _nudge_pos():1806 [1] 5309: 0.030 0.0039859 0.0040615 33038 110.12 5.377 6.834 2022-08-23T07:50:33.956284672 INFO 2025-10-21 17:43:34,313 calibrate.py _nudge_pos():1806 [1] 5329: 0.120 -0.0003366 -0.0002909 3965 13.21 -3.785 -4.080 2022-08-23T08:04:05.960658432 INFO 2025-10-21 17:43:35,242 calibrate.py _nudge_pos():1806 [1] 5405: 0.070 0.0063523 0.0042375 36928 123.09 7.667 6.379 2022-08-23T10:08:26.559572480 INFO 2025-10-21 17:43:35,843 calibrate.py _nudge_pos():1806 [1] 5454: 0.090 0.0002732 0.0000825 3495 11.65 3.485 1.312 2022-08-23T10:20:53.558399744 INFO 2025-10-21 17:43:36,786 calibrate.py _nudge_pos():1806 [1] 5531: 0.160 0.0000397 0.0002603 2000 6.66 0.884 7.238 2022-08-23T10:28:49.555791616 INFO 2025-10-21 17:43:37,131 calibrate.py _nudge_pos():1806 [1] 5559: 0.160 -0.0000692 0.0000145 1970 6.56 -1.567 0.408 2022-08-23T10:35:50.556951040 INFO 2025-10-21 17:43:37,833 calibrate.py _nudge_pos():1806 [1] 5616: 0.030 0.0040443 0.0025073 32473 108.24 5.551 4.292 2022-08-23T12:25:01.158204160 INFO 2025-10-21 17:43:37,848 calibrate.py _nudge_pos():1806 [1] 5617: 0.040 0.0000382 -0.0000350 15 0.05 121.547 -139.109 2022-08-23T12:25:04.157998592 INFO 2025-10-21 17:43:38,147 calibrate.py _nudge_pos():1806 [1] 5641: 0.030 -0.0000129 0.0000038 20 0.06 -30.198 11.057 2022-08-23T12:25:31.156149248 INFO 2025-10-21 17:43:41,938 calibrate.py _nudge_pos():1806 [1] 5946: 0.010 0.0012180 0.0013516 9711 32.37 5.591 7.738 2022-08-23T13:02:57.362273536 INFO 2025-10-21 17:43:42,753 calibrate.py _nudge_pos():1806 [1] 6005: 0.120 0.0014176 0.0002447 8531 28.43 7.408 1.594 2022-08-23T13:32:21.361431040 INFO 2025-10-21 17:43:47,342 calibrate.py _nudge_pos():1806 [1] 6372: 0.020 0.0002050 0.0001527 2081 6.93 4.394 4.080 2022-08-23T13:45:23.557847040 INFO 2025-10-21 17:43:47,859 calibrate.py _nudge_pos():1806 [1] 6413: 0.020 -0.0001914 0.0002310 1991 6.63 -4.287 6.453 2022-08-23T13:52:41.557841920 INFO 2025-10-21 17:43:48,049 calibrate.py _nudge_pos():1806 [1] 6428: 0.050 -0.0002359 0.0002249 1815 6.05 -5.798 6.892 2022-08-23T13:58:58.562015488 INFO 2025-10-21 17:48:09,398 calibrate.py _nudge_pos():1862 [1] 26552: - - - 0 0.00 - - INFO 2025-10-21 17:48:09,398 calibrate.py _nudge_pos():1868 [1] Points in final series = 493594 INFO 2025-10-21 17:49:10,002 calibrate.py _read_oxy_coeffs():1189 [1] Looking for calibration file for O2 sensor serial number 143 on port side INFO 2025-10-21 17:49:10,004 calibrate.py _read_oxy_coeffs():1219 [1] Executing: find "/Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files" -name "143" INFO 2025-10-21 17:49:10,236 calibrate.py _read_oxy_coeffs():1238 [1] Found calibration date dirs: 2011_June 2012_Oct 2013-Dec 2013_July 2015-Oct 2017_Mar 2020_Feb 2023_Jan 2024_Jan WARNING 2025-10-21 17:49:10,242 calibrate.py _cal_date_xml_files():1081 [1] Found 11 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/143/2011_June INFO 2025-10-21 17:49:10,242 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-21 17:49:10,248 calibrate.py _cal_date_xml_files():1081 [1] Found 11 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/143/2012_Oct INFO 2025-10-21 17:49:10,248 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-21 17:49:10,253 calibrate.py _cal_date_xml_files():1081 [1] Found 11 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/143/2013-Dec INFO 2025-10-21 17:49:10,253 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-21 17:49:10,258 calibrate.py _cal_date_xml_files():1081 [1] Found 11 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/143/2013_July INFO 2025-10-21 17:49:10,259 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-21 17:49:10,265 calibrate.py _cal_date_xml_files():1081 [1] Found 11 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/143/2015-Oct INFO 2025-10-21 17:49:10,266 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-21 17:49:10,271 calibrate.py _cal_date_xml_files():1081 [1] Found 11 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/143/2017_Mar INFO 2025-10-21 17:49:10,272 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-21 17:49:10,277 calibrate.py _cal_date_xml_files():1081 [1] Found 11 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/143/2020_Feb INFO 2025-10-21 17:49:10,278 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-21 17:49:10,284 calibrate.py _cal_date_xml_files():1081 [1] Found 11 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/143/2023_Jan INFO 2025-10-21 17:49:10,284 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-21 17:49:10,290 calibrate.py _cal_date_xml_files():1081 [1] Found 11 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/143/2024_Jan INFO 2025-10-21 17:49:10,290 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} INFO 2025-10-21 17:49:10,305 calibrate.py _read_oxy_coeffs():1247 [1] File /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/143/2013_July/Oxygen_SBE43_0143.XML has CalibrationDate 2013-07-17 00:00:00+00:00 INFO 2025-10-21 17:49:10,305 calibrate.py _read_oxy_coeffs():1263 [1] File /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/143/2013_July/Oxygen_SBE43_0143.XML is just before 2022.234.00 with mission_start=2022-08-22T16:04:45.943790080 INFO 2025-10-21 17:49:24,574 calibrate.py _calibrated_oxygen():2513 [1] dissolvedO2_port: parsed from /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/143/2013_July/Oxygen_SBE43_0143.XML file: {'Soc': 0.42815, 'offset': -0.4829, 'A': -0.0031081, 'B': 0.0001985, 'C': -3.3814e-06, 'D0': 2.5826, 'D1': 0.000192634, 'D2': -0.0464803, 'E': 0.036, 'Tau20': 1.28, 'H1': -0.033, 'H2': 5000.0, 'H3': 1450.0} INFO 2025-10-21 17:49:24,582 calibrate.py _read_oxy_coeffs():1189 [1] Looking for calibration file for O2 sensor serial number 3968 on stbd side INFO 2025-10-21 17:49:24,582 calibrate.py _read_oxy_coeffs():1219 [1] Executing: find "/Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files" -name "3968" INFO 2025-10-21 17:49:24,773 calibrate.py _read_oxy_coeffs():1238 [1] Found calibration date dirs: 2020_Jul 2025_Jan WARNING 2025-10-21 17:49:24,776 calibrate.py _cal_date_xml_files():1081 [1] Found 3 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/3968/2020_Jul INFO 2025-10-21 17:49:24,776 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-21 17:49:24,781 calibrate.py _cal_date_xml_files():1081 [1] Found 3 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/3968/2025_Jan INFO 2025-10-21 17:49:24,781 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} INFO 2025-10-21 17:49:24,787 calibrate.py _read_oxy_coeffs():1247 [1] File /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/3968/2020_Jul/SBE43_3968.xml has CalibrationDate 2020-06-16 00:00:00+00:00 INFO 2025-10-21 17:49:24,787 calibrate.py _read_oxy_coeffs():1263 [1] File /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/3968/2020_Jul/SBE43_3968.xml is just before 2022.234.00 with mission_start=2022-08-22T16:04:45.943790080 INFO 2025-10-21 17:49:38,990 calibrate.py _calibrated_oxygen():2513 [1] dissolvedO2_stbd: parsed from /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/3968/2020_Jul/SBE43_3968.xml file: {'Soc': 0.43332, 'offset': -0.5106, 'A': -0.0037655, 'B': 0.00018802, 'C': -3.038e-06, 'D0': 2.5826, 'D1': 0.000192634, 'D2': -0.0464803, 'E': 0.036, 'Tau20': 1.54, 'H1': -0.033, 'H2': 5000.0, 'H3': 1450.0} INFO 2025-10-21 17:49:58,322 calibrate.py _geometric_depth_correction():3423 [1] seabird25p: d_beg_time_diff: 5 seconds, d_end_time_diff: 0 seconds INFO 2025-10-21 17:50:04,065 calibrate.py _geometric_depth_correction():3423 [1] seabird25p: d_beg_time_diff: 5 seconds, d_end_time_diff: 0 seconds INFO 2025-10-21 17:50:04,075 calibrate.py _ctd_process():2919 [1] Performing range checking of ['seabird25p_salinity'] in 2022.234.00/seabird25p.nc WARNING 2025-10-21 17:50:04,088 calibrate.py _range_qc_combined_nc():890 [1] More than 500 (115414) seabird25p_salinity values found outside of range. This may indicate a problem with the seabird25p data. INFO 2025-10-21 17:50:04,088 calibrate.py _range_qc_combined_nc():898 [1] Setting 115414 seabird25p_salinity values to NaN INFO 2025-10-21 17:50:04,089 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('seabird25p_salinity', Range(min=30, max=40))] INFO 2025-10-21 17:50:04,089 calibrate.py _range_qc_combined_nc():936 [1] Done range checking seabird25p INFO 2025-10-21 17:50:04,467 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/i2map/missionnetcdfs/2022.234.00/i2map_2022.234.00_cal.nc INFO 2025-10-21 17:51:13,885 calibrate.py write_netcdf():3512 [1] Data variables written: depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, seabird25p_beam_transmittance, seabird25p_conductivity, seabird25p_conductivity_onboard, seabird25p_depth, seabird25p_dissolvedO2_port, seabird25p_dissolvedO2_stbd, seabird25p_oxygen_mll_port, seabird25p_oxygen_mll_stbd, seabird25p_oxygen_umolkg_port, seabird25p_oxygen_umolkg_stbd, seabird25p_par, seabird25p_salinity, seabird25p_salinity_onboard, seabird25p_temperature, seabird25p_temperature_onboard, seabird25p_time, tailcone_propRpm, tailcone_time, time INFO 2025-10-21 17:51:13,890 process.py align():251 [1] Alignment steps for 2022.234.00 INFO 2025-10-21 17:51:13,939 align.py process_cal():139 [1] Processing i2map_2022.234.00_cal.nc from /data/auv_data/i2map/missionnetcdfs/2022.234.00 INFO 2025-10-21 17:51:14,069 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-10-21 17:51:14,082 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-10-21 17:51:14,407 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-10-21 17:51:14,423 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-10-21 17:51:14,733 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-10-21 17:51:14,755 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-10-21 17:51:14,943 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-10-21 17:51:14,944 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-10-21 17:51:15,068 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-10-21 17:51:15,085 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-10-21 17:51:15,427 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2022.234.00_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 17:51:15,455 align.py process_cal():249 [1] seabird25p_temperature: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 17:51:15,903 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2022.234.00_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 17:51:15,934 align.py process_cal():249 [1] seabird25p_conductivity: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 17:51:16,378 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2022.234.00_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 17:51:16,408 align.py process_cal():249 [1] seabird25p_salinity: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 17:51:16,850 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2022.234.00_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 17:51:16,879 align.py process_cal():249 [1] seabird25p_temperature_onboard: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 17:51:17,329 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2022.234.00_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 17:51:17,358 align.py process_cal():249 [1] seabird25p_conductivity_onboard: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 17:51:17,800 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2022.234.00_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 17:51:17,828 align.py process_cal():249 [1] seabird25p_salinity_onboard: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 17:51:18,292 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2022.234.00_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 17:51:18,320 align.py process_cal():249 [1] seabird25p_dissolvedO2_port: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 17:51:18,762 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2022.234.00_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 17:51:18,790 align.py process_cal():249 [1] seabird25p_oxygen_mll_port: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 17:51:19,234 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2022.234.00_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 17:51:19,261 align.py process_cal():249 [1] seabird25p_oxygen_umolkg_port: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 17:51:19,702 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2022.234.00_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 17:51:19,738 align.py process_cal():249 [1] seabird25p_dissolvedO2_stbd: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 17:51:20,178 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2022.234.00_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 17:51:20,204 align.py process_cal():249 [1] seabird25p_oxygen_mll_stbd: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 17:51:20,648 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2022.234.00_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 17:51:20,674 align.py process_cal():249 [1] seabird25p_oxygen_umolkg_stbd: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 17:51:21,115 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2022.234.00_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 17:51:21,139 align.py process_cal():249 [1] seabird25p_beam_transmittance: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 17:51:21,576 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2022.234.00_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 17:51:21,600 align.py process_cal():249 [1] seabird25p_depth: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 17:51:22,042 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2022.234.00_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 17:51:22,075 align.py process_cal():249 [1] seabird25p_par: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 17:51:22,559 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 5.00 INFO 2025-10-21 17:51:22,760 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/i2map/missionnetcdfs/2022.234.00/i2map_2022.234.00_align.nc INFO 2025-10-21 17:51:22,942 align.py write_netcdf():342 [1] Data variables written: navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, seabird25p_beam_transmittance, seabird25p_conductivity, seabird25p_conductivity_onboard, seabird25p_depth, seabird25p_dissolvedO2_port, seabird25p_dissolvedO2_stbd, seabird25p_latitude, seabird25p_longitude, seabird25p_oxygen_mll_port, seabird25p_oxygen_mll_stbd, seabird25p_oxygen_umolkg_port, seabird25p_oxygen_umolkg_stbd, seabird25p_par, seabird25p_salinity, seabird25p_salinity_onboard, seabird25p_temperature, seabird25p_temperature_onboard, seabird25p_time, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-10-21 17:51:22,945 process.py resample():273 [1] Resampling steps for 2022.234.00 INFO 2025-10-21 17:51:22,945 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-10-21 17:51:22,975 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/i2map/missionnetcdfs/2022.234.00/i2map_2022.234.00_align.nc mission netCDF file INFO 2025-10-21 17:51:22,985 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/i2map/missionnetcdfs/2022.234.00/i2map_2022.234.00_align.nc mission netCDF file INFO 2025-10-21 17:51:22,989 resample.py get_mission_start_end():1145 [1] navigation: 2022-08-22T16:05:05.252467200 to 2022-08-23T19:35:00.960796672 (0 days 00:00:00.119991808 before mission_end) INFO 2025-10-21 17:51:22,996 resample.py get_mission_start_end():1145 [1] seabird25p: 2022-08-22T16:04:45.943790080 to 2022-08-23T19:35:01.080788480 (0 days 00:00:00 before mission_end) INFO 2025-10-21 17:51:23,002 resample.py get_mission_start_end():1145 [1] tailcone : 2022-08-22T16:04:35.674493440 to 2022-08-23T19:35:01.050790400 (0 days 00:00:00.029998080 before mission_end) INFO 2025-10-21 17:51:23,003 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/i2map/missionnetcdfs/2022.234.00/i2map_2022.234.00_align.nc mission netCDF file INFO 2025-10-21 17:51:23,004 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-10-21 17:51:24,316 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-10-21 17:51:24,470 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-10-21 17:51:24,619 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-10-21 17:51:24,763 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-10-21 17:51:24,984 resample.py resample_variable():1031 [1] Resampling seabird25p_temperature with frequency 1S following 3 point median filter INFO 2025-10-21 17:51:25,209 resample.py resample_variable():1031 [1] Resampling seabird25p_conductivity with frequency 1S following 3 point median filter INFO 2025-10-21 17:51:25,666 resample.py resample_variable():1031 [1] Resampling seabird25p_salinity with frequency 1S following 3 point median filter INFO 2025-10-21 17:51:25,957 resample.py resample_variable():1031 [1] Resampling seabird25p_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-10-21 17:51:26,204 resample.py resample_variable():1031 [1] Resampling seabird25p_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-10-21 17:51:26,450 resample.py resample_variable():1031 [1] Resampling seabird25p_salinity_onboard with frequency 1S following 3 point median filter INFO 2025-10-21 17:51:26,705 resample.py resample_variable():1031 [1] Resampling seabird25p_dissolvedO2_port with frequency 1S following 3 point median filter INFO 2025-10-21 17:51:26,962 resample.py resample_variable():1031 [1] Resampling seabird25p_oxygen_mll_port with frequency 1S following 3 point median filter INFO 2025-10-21 17:51:27,221 resample.py resample_variable():1031 [1] Resampling seabird25p_oxygen_umolkg_port with frequency 1S following 3 point median filter INFO 2025-10-21 17:51:27,477 resample.py resample_variable():1031 [1] Resampling seabird25p_dissolvedO2_stbd with frequency 1S following 3 point median filter INFO 2025-10-21 17:51:27,735 resample.py resample_variable():1031 [1] Resampling seabird25p_oxygen_mll_stbd with frequency 1S following 3 point median filter INFO 2025-10-21 17:51:27,991 resample.py resample_variable():1031 [1] Resampling seabird25p_oxygen_umolkg_stbd with frequency 1S following 3 point median filter INFO 2025-10-21 17:51:28,253 resample.py resample_variable():1031 [1] Resampling seabird25p_beam_transmittance with frequency 1S following 3 point median filter INFO 2025-10-21 17:51:28,499 resample.py resample_variable():1031 [1] Resampling seabird25p_par with frequency 1S following 3 point median filter INFO 2025-10-21 17:51:28,654 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-10-21 17:51:29,267 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/i2map/missionnetcdfs/2022.234.00/i2map_2022.234.00_1S.nc INFO 2025-10-21 17:51:29,271 process.py archive():337 [1] Archiving steps for 2022.234.00 INFO 2025-10-21 17:51:29,271 process.py archive():347 [1] nc_file_base = /data/auv_data/i2map/missionnetcdfs/2022.234.00/i2map_2022.234.00, BASE_PATH = /data/auv_data INFO 2025-10-21 17:51:29,274 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/i2map/missionnetcdfs/2022.234.00/i2map_2022.234.00 files to /Volumes/AUVCTD/surveys/2022/netcdf INFO 2025-10-21 17:51:29,275 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2022/netcdf/i2map_2022.234.00_1S.nc INFO 2025-10-21 17:51:29,329 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2022.234.00/i2map_2022.234.00_1S.nc /Volumes/AUVCTD/surveys/2022/netcdf done. INFO 2025-10-21 17:51:29,330 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2022/netcdf/i2map_2022.234.00_cal.nc INFO 2025-10-21 17:51:29,755 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2022.234.00/i2map_2022.234.00_cal.nc /Volumes/AUVCTD/surveys/2022/netcdf done. INFO 2025-10-21 17:51:29,757 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2022/netcdf/i2map_2022.234.00_align.nc INFO 2025-10-21 17:51:30,117 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2022.234.00/i2map_2022.234.00_align.nc /Volumes/AUVCTD/surveys/2022/netcdf done. INFO 2025-10-21 17:51:30,132 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2022.234.00/gps.nc /Volumes/AUVCTD/missionnetcdfs/2022/2022234/2022.234.00 done. INFO 2025-10-21 17:51:30,539 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2022.234.00/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2022/2022234/2022.234.00 done. INFO 2025-10-21 17:51:30,680 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2022.234.00/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2022/2022234/2022.234.00 done. INFO 2025-10-21 17:51:30,921 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2022.234.00/seabird25p.nc /Volumes/AUVCTD/missionnetcdfs/2022/2022234/2022.234.00 done. INFO 2025-10-21 17:51:31,005 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2022.234.00/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2022/2022234/2022.234.00 done. INFO 2025-10-21 17:51:31,005 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-10-21 17:51:31,005 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2022.234.00/i2map_2022.234.00_processing.log /Volumes/AUVCTD/surveys/2022/netcdf