INFO 2025-10-21 17:20:39,122 process.py process_mission():429 [1] commandline = /src/data/process_i2map.py -v --noinput --start_year 2022 --end_year 2022 --start_yd 1 --end_yd 365 --num_cores 1 --clobber INFO 2025-10-21 17:20:39,123 process.py process_mission():449 [1] Processing i2map mission 2022.061.01 by user docker_user on host cb88459c7ecc INFO 2025-10-21 17:20:39,123 process.py download_process():165 [1] Download and processing steps for 2022.061.01 INFO 2025-10-21 17:20:39,123 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/M3/master/i2MAP/2022/03/20220302/2022.061.01 INFO 2025-10-21 17:20:39,123 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/M3/master/i2MAP/2022/03/20220302/2022.061.01 to /data/auv_data/i2map/missionlogs/2022.061.01 INFO 2025-10-21 17:20:41,975 logs2netcdfs.py download_process_logs():779 [1] Processing mission: i2map 2022.061.01 INFO 2025-10-21 17:20:41,976 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/i2map/missionlogs/2022.061.01/gps.log (864932 bytes) INFO 2025-10-21 17:20:42,112 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/i2map/missionlogs/2022.061.01/navigation.log (141642804 bytes) INFO 2025-10-21 17:20:53,254 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/i2map/missionlogs/2022.061.01/parosci.log (39813206 bytes) INFO 2025-10-21 17:20:56,445 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/i2map/missionlogs/2022.061.01/parosci.log: [ 9218 9219 167255 210946] INFO 2025-10-21 17:20:56,552 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/i2map/missionlogs/2022.061.01/seabird25p.log (79949048 bytes) INFO 2025-10-21 17:21:02,026 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/i2map/missionlogs/2022.061.01/seabird25p.log: [ 1 7920 92162 92163 92164 396767] INFO 2025-10-21 17:21:02,314 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/i2map/missionlogs/2022.061.01/tailCone.log (20003899 bytes) INFO 2025-10-21 17:21:04,746 logs2netcdfs.py download_process_logs():807 [1] Time to process: 22.77 seconds INFO 2025-10-21 17:21:04,746 process.py calibrate():227 [1] Calibration steps for 2022.061.01 INFO 2025-10-21 17:21:05,294 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-10-21 17:21:05,297 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-10-21 17:21:06,003 calibrate.py _nudge_pos():1806 [1] 92: 0.200 0.0043779 0.0091449 32493 108.31 6.005 15.646 2022-03-02T19:14:37.692373504 INFO 2025-10-21 17:21:06,641 calibrate.py _nudge_pos():1806 [1] 150: 0.110 0.0010144 0.0002670 5905 19.68 7.658 2.514 2022-03-02T19:35:15.697564416 INFO 2025-10-21 17:21:09,854 calibrate.py _nudge_pos():1806 [1] 443: 0.140 0.0032478 0.0053828 37688 125.62 3.841 7.940 2022-03-02T21:45:45.291200512 INFO 2025-10-21 17:21:11,574 calibrate.py _nudge_pos():1806 [1] 587: 0.170 0.0002235 -0.0000157 4080 13.60 2.442 -0.215 2022-03-02T22:01:44.295504384 INFO 2025-10-21 17:21:11,971 calibrate.py _nudge_pos():1806 [1] 621: 0.020 0.0001211 0.0002776 1936 6.45 2.790 7.975 2022-03-02T22:08:44.496718336 INFO 2025-10-21 17:21:12,477 calibrate.py _nudge_pos():1806 [1] 661: 0.030 -0.0001002 0.0000614 1845 6.15 -2.423 1.852 2022-03-02T22:15:32.498768384 INFO 2025-10-21 17:21:13,331 calibrate.py _nudge_pos():1806 [1] 722: 0.110 0.0042634 0.0074118 32522 108.40 5.843 12.669 2022-03-03T00:04:56.899076096 INFO 2025-10-21 17:21:13,928 calibrate.py _nudge_pos():1806 [1] 772: 0.180 -0.0011182 0.0000927 5035 16.78 -9.901 1.024 2022-03-03T00:22:32.896735488 INFO 2025-10-21 17:21:14,176 calibrate.py _nudge_pos():1806 [1] 793: 0.110 0.0059789 0.0062324 35987 119.96 7.405 9.627 2022-03-03T02:22:50.492296192 INFO 2025-10-21 17:21:15,074 calibrate.py _nudge_pos():1806 [1] 869: 0.100 -0.0000015 -0.0000152 15 0.05 -4.881 -60.524 2022-03-03T02:24:08.496952576 INFO 2025-10-21 17:21:15,113 calibrate.py _nudge_pos():1806 [1] 872: 0.160 -0.0012573 0.0005606 4205 14.01 -13.331 7.413 2022-03-03T02:38:11.499203072 INFO 2025-10-21 17:21:15,933 calibrate.py _nudge_pos():1806 [1] 939: 0.010 -0.0005647 0.0004222 1840 6.13 -13.688 12.761 2022-03-03T02:45:25.699458048 INFO 2025-10-21 17:21:16,314 calibrate.py _nudge_pos():1806 [1] 970: 0.030 -0.0005039 0.0003556 1866 6.22 -12.043 10.599 2022-03-03T02:52:08.691851264 INFO 2025-10-21 17:21:17,512 calibrate.py _nudge_pos():1806 [1] 1069: 0.020 0.0000104 0.0000004 15 0.05 33.149 1.590 2022-03-03T02:53:49.694932224 INFO 2025-10-21 17:21:17,561 calibrate.py _nudge_pos():1806 [1] 1073: 0.080 -0.0031180 0.0061932 14061 46.87 -9.884 24.487 2022-03-03T03:40:44.892077824 INFO 2025-10-21 17:21:18,343 calibrate.py _nudge_pos():1806 [1] 1138: 0.080 0.0001163 0.0038388 14281 47.60 0.363 14.944 2022-03-03T04:29:25.092030464 INFO 2025-10-21 17:21:19,119 calibrate.py _nudge_pos():1806 [1] 1203: 0.080 -0.0000235 0.0001162 310 1.03 -3.386 20.905 2022-03-03T04:31:31.093398784 INFO 2025-10-21 17:21:20,053 calibrate.py _nudge_pos():1806 [1] 1281: 0.130 -0.0001532 0.0006363 4305 14.35 -1.587 8.218 2022-03-03T04:47:09.099141120 INFO 2025-10-21 17:21:20,448 calibrate.py _nudge_pos():1806 [1] 1308: 0.130 0.0000142 0.0000177 20 0.06 33.342 51.768 2022-03-03T04:47:39.097085952 INFO 2025-10-21 17:21:21,256 calibrate.py _nudge_pos():1806 [1] 1366: 0.130 -0.0000936 -0.0000217 275 0.91 -15.221 -4.399 2022-03-03T04:49:31.099413504 INFO 2025-10-21 17:21:21,936 calibrate.py _nudge_pos():1806 [1] 1420: 0.180 0.0000164 0.0001657 1080 3.60 0.679 8.537 2022-03-03T04:54:00.100985600 INFO 2025-10-21 17:21:23,204 calibrate.py _nudge_pos():1806 [1] 1516: 0.020 0.0001614 0.0002145 1336 4.45 5.390 8.932 2022-03-03T05:00:02.296173312 INFO 2025-10-21 17:21:24,933 calibrate.py _nudge_pos():1806 [1] 1656: 0.060 0.0001473 0.0007205 2260 7.53 2.906 17.731 2022-03-03T05:09:53.295687168 INFO 2025-10-21 17:21:27,094 calibrate.py _nudge_pos():1806 [1] 1834: 0.090 -0.0001952 0.0005459 2540 8.46 -3.427 11.953 2022-03-03T05:21:18.298761472 INFO 2025-10-21 17:21:40,484 calibrate.py _nudge_pos():1806 [1] 2950: 0.010 0.0006751 0.0005250 2066 6.88 14.571 14.133 2022-03-03T05:46:46.494072576 INFO 2025-10-21 17:21:43,023 calibrate.py _nudge_pos():1806 [1] 3132: 0.060 -0.0000625 0.0006907 2710 9.03 -1.028 14.173 2022-03-03T05:58:49.494543872 INFO 2025-10-21 17:21:43,174 calibrate.py _nudge_pos():1806 [1] 3145: 0.110 0.0024364 0.0095133 32831 109.44 3.307 16.108 2022-03-03T07:48:27.893892608 INFO 2025-10-21 17:21:44,888 calibrate.py _nudge_pos():1806 [1] 3283: 0.030 0.0021420 0.0013668 6581 21.93 14.510 11.547 2022-03-03T08:12:41.094341632 INFO 2025-10-21 17:21:48,808 calibrate.py _nudge_pos():1806 [1] 3612: 0.020 0.0002503 0.0042858 39258 130.86 0.284 6.069 2022-03-03T10:29:00.694000384 INFO 2025-10-21 17:21:49,209 calibrate.py _nudge_pos():1806 [1] 3645: 0.030 -0.0000082 0.0000661 35 0.11 -10.775 108.066 2022-03-03T10:29:40.691260672 INFO 2025-10-21 17:21:53,175 calibrate.py _nudge_pos():1806 [1] 3971: 0.120 0.0011208 0.0004714 4720 15.73 10.587 5.553 2022-03-03T10:50:49.694327808 INFO 2025-10-21 17:21:54,050 calibrate.py _nudge_pos():1806 [1] 4044: 0.160 0.0004074 0.0005433 2460 8.20 7.385 12.282 2022-03-03T11:00:13.695691008 INFO 2025-10-21 17:21:55,285 calibrate.py _nudge_pos():1806 [1] 4147: 0.200 0.0000681 0.0003039 2255 7.51 1.348 7.494 2022-03-03T11:09:26.697807872 INFO 2025-10-21 17:21:56,099 calibrate.py _nudge_pos():1806 [1] 4214: 0.110 0.0053611 0.0085673 32836 109.45 7.276 14.504 2022-03-03T13:00:00.293375488 INFO 2025-10-21 17:22:01,692 calibrate.py _nudge_pos():1806 [1] 4670: 0.060 0.0002321 0.0016471 9661 32.20 1.071 9.479 2022-03-03T13:39:47.499840768 INFO 2025-10-21 17:22:02,087 calibrate.py _nudge_pos():1806 [1] 4702: 0.020 0.0007776 0.0016540 9061 30.20 3.826 10.149 2022-03-03T14:10:30.693573120 INFO 2025-10-21 17:22:08,123 calibrate.py _nudge_pos():1806 [1] 5182: 0.070 -0.0003578 0.0008568 3035 10.11 -5.257 15.698 2022-03-03T14:28:36.699176704 INFO 2025-10-21 17:22:08,221 calibrate.py _nudge_pos():1806 [1] 5190: 0.070 -0.0000011 -0.0000474 35 0.11 -1.496 -77.562 2022-03-03T14:28:50.698217728 INFO 2025-10-21 17:22:08,757 calibrate.py _nudge_pos():1806 [1] 5234: 0.090 -0.0002925 0.0000677 1800 6.00 -7.247 2.093 2022-03-03T14:35:33.700610048 INFO 2025-10-21 17:22:09,629 calibrate.py _nudge_pos():1806 [1] 5305: 0.130 -0.0000144 0.0003926 1725 5.75 -0.373 12.660 2022-03-03T14:42:28.692181248 INFO 2025-10-21 17:23:32,780 calibrate.py _nudge_pos():1862 [1] 11963: - - - 2 0.00 - - INFO 2025-10-21 17:23:32,781 calibrate.py _nudge_pos():1868 [1] Points in final series = 415894 INFO 2025-10-21 17:24:23,824 calibrate.py _read_oxy_coeffs():1189 [1] Looking for calibration file for O2 sensor serial number 143 on port side INFO 2025-10-21 17:24:23,827 calibrate.py _read_oxy_coeffs():1219 [1] Executing: find "/Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files" -name "143" INFO 2025-10-21 17:24:24,346 calibrate.py _read_oxy_coeffs():1238 [1] Found calibration date dirs: 2011_June 2012_Oct 2013-Dec 2013_July 2015-Oct 2017_Mar 2020_Feb 2023_Jan 2024_Jan WARNING 2025-10-21 17:24:24,352 calibrate.py _cal_date_xml_files():1081 [1] Found 11 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/143/2011_June INFO 2025-10-21 17:24:24,352 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-21 17:24:24,359 calibrate.py _cal_date_xml_files():1081 [1] Found 11 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/143/2012_Oct INFO 2025-10-21 17:24:24,359 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-21 17:24:24,365 calibrate.py _cal_date_xml_files():1081 [1] Found 11 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/143/2013-Dec INFO 2025-10-21 17:24:24,365 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-21 17:24:24,371 calibrate.py _cal_date_xml_files():1081 [1] Found 11 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/143/2013_July INFO 2025-10-21 17:24:24,371 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-21 17:24:24,377 calibrate.py _cal_date_xml_files():1081 [1] Found 11 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/143/2015-Oct INFO 2025-10-21 17:24:24,377 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-21 17:24:24,384 calibrate.py _cal_date_xml_files():1081 [1] Found 11 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/143/2017_Mar INFO 2025-10-21 17:24:24,384 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-21 17:24:24,391 calibrate.py _cal_date_xml_files():1081 [1] Found 11 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/143/2020_Feb INFO 2025-10-21 17:24:24,391 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-21 17:24:24,397 calibrate.py _cal_date_xml_files():1081 [1] Found 11 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/143/2023_Jan INFO 2025-10-21 17:24:24,397 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-21 17:24:24,402 calibrate.py _cal_date_xml_files():1081 [1] Found 11 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/143/2024_Jan INFO 2025-10-21 17:24:24,402 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} INFO 2025-10-21 17:24:24,409 calibrate.py _read_oxy_coeffs():1247 [1] File /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/143/2013_July/Oxygen_SBE43_0143.XML has CalibrationDate 2013-07-17 00:00:00+00:00 INFO 2025-10-21 17:24:24,409 calibrate.py _read_oxy_coeffs():1263 [1] File /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/143/2013_July/Oxygen_SBE43_0143.XML is just before 2022.061.01 with mission_start=2022-03-02T17:25:07.472464640 INFO 2025-10-21 17:24:36,218 calibrate.py _calibrated_oxygen():2513 [1] dissolvedO2_port: parsed from /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/143/2013_July/Oxygen_SBE43_0143.XML file: {'Soc': 0.42815, 'offset': -0.4829, 'A': -0.0031081, 'B': 0.0001985, 'C': -3.3814e-06, 'D0': 2.5826, 'D1': 0.000192634, 'D2': -0.0464803, 'E': 0.036, 'Tau20': 1.28, 'H1': -0.033, 'H2': 5000.0, 'H3': 1450.0} INFO 2025-10-21 17:24:36,225 calibrate.py _read_oxy_coeffs():1189 [1] Looking for calibration file for O2 sensor serial number 3968 on stbd side INFO 2025-10-21 17:24:36,226 calibrate.py _read_oxy_coeffs():1219 [1] Executing: find "/Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files" -name "3968" INFO 2025-10-21 17:24:36,355 calibrate.py _read_oxy_coeffs():1238 [1] Found calibration date dirs: 2020_Jul 2025_Jan WARNING 2025-10-21 17:24:36,359 calibrate.py _cal_date_xml_files():1081 [1] Found 3 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/3968/2020_Jul INFO 2025-10-21 17:24:36,359 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-21 17:24:36,364 calibrate.py _cal_date_xml_files():1081 [1] Found 3 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/3968/2025_Jan INFO 2025-10-21 17:24:36,364 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} INFO 2025-10-21 17:24:36,370 calibrate.py _read_oxy_coeffs():1247 [1] File /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/3968/2020_Jul/SBE43_3968.xml has CalibrationDate 2020-06-16 00:00:00+00:00 INFO 2025-10-21 17:24:36,370 calibrate.py _read_oxy_coeffs():1263 [1] File /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/3968/2020_Jul/SBE43_3968.xml is just before 2022.061.01 with mission_start=2022-03-02T17:25:07.472464640 INFO 2025-10-21 17:24:48,161 calibrate.py _calibrated_oxygen():2513 [1] dissolvedO2_stbd: parsed from /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/3968/2020_Jul/SBE43_3968.xml file: {'Soc': 0.43332, 'offset': -0.5106, 'A': -0.0037655, 'B': 0.00018802, 'C': -3.038e-06, 'D0': 2.5826, 'D1': 0.000192634, 'D2': -0.0464803, 'E': 0.036, 'Tau20': 1.54, 'H1': -0.033, 'H2': 5000.0, 'H3': 1450.0} INFO 2025-10-21 17:25:04,606 calibrate.py _geometric_depth_correction():3423 [1] seabird25p: d_beg_time_diff: 5 seconds, d_end_time_diff: -1 seconds INFO 2025-10-21 17:25:09,383 calibrate.py _geometric_depth_correction():3423 [1] seabird25p: d_beg_time_diff: 5 seconds, d_end_time_diff: -1 seconds INFO 2025-10-21 17:25:09,393 calibrate.py _ctd_process():2919 [1] Performing range checking of ['seabird25p_salinity'] in 2022.061.01/seabird25p.nc WARNING 2025-10-21 17:25:09,396 calibrate.py _range_qc_combined_nc():890 [1] More than 500 (645) seabird25p_salinity values found outside of range. This may indicate a problem with the seabird25p data. INFO 2025-10-21 17:25:09,396 calibrate.py _range_qc_combined_nc():898 [1] Setting 645 seabird25p_salinity values to NaN INFO 2025-10-21 17:25:09,397 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('seabird25p_salinity', Range(min=30, max=40))] INFO 2025-10-21 17:25:09,397 calibrate.py _range_qc_combined_nc():936 [1] Done range checking seabird25p INFO 2025-10-21 17:25:09,728 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/i2map/missionnetcdfs/2022.061.01/i2map_2022.061.01_cal.nc INFO 2025-10-21 17:26:08,033 calibrate.py write_netcdf():3512 [1] Data variables written: depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, seabird25p_beam_transmittance, seabird25p_conductivity, seabird25p_conductivity_onboard, seabird25p_depth, seabird25p_dissolvedO2_port, seabird25p_dissolvedO2_stbd, seabird25p_oxygen_mll_port, seabird25p_oxygen_mll_stbd, seabird25p_oxygen_umolkg_port, seabird25p_oxygen_umolkg_stbd, seabird25p_par, seabird25p_salinity, seabird25p_salinity_onboard, seabird25p_temperature, seabird25p_temperature_onboard, seabird25p_time, tailcone_propRpm, tailcone_time, time INFO 2025-10-21 17:26:08,038 process.py align():251 [1] Alignment steps for 2022.061.01 INFO 2025-10-21 17:26:08,081 align.py process_cal():139 [1] Processing i2map_2022.061.01_cal.nc from /data/auv_data/i2map/missionnetcdfs/2022.061.01 INFO 2025-10-21 17:26:08,202 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-10-21 17:26:08,215 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-10-21 17:26:08,521 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-10-21 17:26:08,541 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-10-21 17:26:08,807 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-10-21 17:26:08,822 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-10-21 17:26:08,987 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-10-21 17:26:08,987 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-10-21 17:26:09,111 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-10-21 17:26:09,129 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-10-21 17:26:09,416 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2022.061.01_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 17:26:09,441 align.py process_cal():249 [1] seabird25p_temperature: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 17:26:09,838 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2022.061.01_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 17:26:09,867 align.py process_cal():249 [1] seabird25p_conductivity: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 17:26:10,239 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2022.061.01_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 17:26:10,264 align.py process_cal():249 [1] seabird25p_salinity: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 17:26:10,646 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2022.061.01_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 17:26:10,678 align.py process_cal():249 [1] seabird25p_temperature_onboard: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 17:26:11,048 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2022.061.01_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 17:26:11,072 align.py process_cal():249 [1] seabird25p_conductivity_onboard: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 17:26:11,445 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2022.061.01_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 17:26:11,470 align.py process_cal():249 [1] seabird25p_salinity_onboard: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 17:26:11,838 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2022.061.01_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 17:26:11,862 align.py process_cal():249 [1] seabird25p_dissolvedO2_port: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 17:26:12,235 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2022.061.01_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 17:26:12,260 align.py process_cal():249 [1] seabird25p_oxygen_mll_port: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 17:26:12,635 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2022.061.01_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 17:26:12,659 align.py process_cal():249 [1] seabird25p_oxygen_umolkg_port: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 17:26:13,038 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2022.061.01_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 17:26:13,062 align.py process_cal():249 [1] seabird25p_dissolvedO2_stbd: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 17:26:13,430 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2022.061.01_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 17:26:13,451 align.py process_cal():249 [1] seabird25p_oxygen_mll_stbd: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 17:26:13,819 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2022.061.01_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 17:26:13,841 align.py process_cal():249 [1] seabird25p_oxygen_umolkg_stbd: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 17:26:14,209 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2022.061.01_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 17:26:14,230 align.py process_cal():249 [1] seabird25p_beam_transmittance: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 17:26:14,596 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2022.061.01_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 17:26:14,623 align.py process_cal():249 [1] seabird25p_depth: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 17:26:14,991 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2022.061.01_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 17:26:15,012 align.py process_cal():249 [1] seabird25p_par: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 17:26:15,449 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 5.00 INFO 2025-10-21 17:26:15,618 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/i2map/missionnetcdfs/2022.061.01/i2map_2022.061.01_align.nc INFO 2025-10-21 17:26:15,773 align.py write_netcdf():342 [1] Data variables written: navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, seabird25p_beam_transmittance, seabird25p_conductivity, seabird25p_conductivity_onboard, seabird25p_depth, seabird25p_dissolvedO2_port, seabird25p_dissolvedO2_stbd, seabird25p_latitude, seabird25p_longitude, seabird25p_oxygen_mll_port, seabird25p_oxygen_mll_stbd, seabird25p_oxygen_umolkg_port, seabird25p_oxygen_umolkg_stbd, seabird25p_par, seabird25p_salinity, seabird25p_salinity_onboard, seabird25p_temperature, seabird25p_temperature_onboard, seabird25p_time, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-10-21 17:26:15,776 process.py resample():273 [1] Resampling steps for 2022.061.01 INFO 2025-10-21 17:26:15,776 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-10-21 17:26:15,804 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/i2map/missionnetcdfs/2022.061.01/i2map_2022.061.01_align.nc mission netCDF file INFO 2025-10-21 17:26:15,813 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/i2map/missionnetcdfs/2022.061.01/i2map_2022.061.01_align.nc mission netCDF file INFO 2025-10-21 17:26:15,816 resample.py get_mission_start_end():1145 [1] navigation: 2022-03-02T17:25:26.721145856 to 2022-03-03T16:34:04.693473792 (0 days 00:00:00 before mission_end) INFO 2025-10-21 17:26:15,822 resample.py get_mission_start_end():1145 [1] seabird25p: 2022-03-02T17:25:07.472464640 to 2022-03-03T16:34:04.693473792 (0 days 00:00:00 before mission_end) INFO 2025-10-21 17:26:15,826 resample.py get_mission_start_end():1145 [1] tailcone : 2022-03-02T17:24:57.033179648 to 2022-03-03T16:34:04.623478528 (0 days 00:00:00.069995264 before mission_end) INFO 2025-10-21 17:26:15,827 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/i2map/missionnetcdfs/2022.061.01/i2map_2022.061.01_align.nc mission netCDF file INFO 2025-10-21 17:26:15,828 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-10-21 17:26:16,918 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-10-21 17:26:17,048 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-10-21 17:26:17,173 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-10-21 17:26:17,297 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-10-21 17:26:17,487 resample.py resample_variable():1031 [1] Resampling seabird25p_temperature with frequency 1S following 3 point median filter INFO 2025-10-21 17:26:17,686 resample.py resample_variable():1031 [1] Resampling seabird25p_conductivity with frequency 1S following 3 point median filter INFO 2025-10-21 17:26:17,906 resample.py resample_variable():1031 [1] Resampling seabird25p_salinity with frequency 1S following 3 point median filter INFO 2025-10-21 17:26:18,116 resample.py resample_variable():1031 [1] Resampling seabird25p_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-10-21 17:26:18,330 resample.py resample_variable():1031 [1] Resampling seabird25p_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-10-21 17:26:18,539 resample.py resample_variable():1031 [1] Resampling seabird25p_salinity_onboard with frequency 1S following 3 point median filter INFO 2025-10-21 17:26:18,840 resample.py resample_variable():1031 [1] Resampling seabird25p_dissolvedO2_port with frequency 1S following 3 point median filter INFO 2025-10-21 17:26:19,059 resample.py resample_variable():1031 [1] Resampling seabird25p_oxygen_mll_port with frequency 1S following 3 point median filter INFO 2025-10-21 17:26:19,280 resample.py resample_variable():1031 [1] Resampling seabird25p_oxygen_umolkg_port with frequency 1S following 3 point median filter INFO 2025-10-21 17:26:19,504 resample.py resample_variable():1031 [1] Resampling seabird25p_dissolvedO2_stbd with frequency 1S following 3 point median filter INFO 2025-10-21 17:26:19,726 resample.py resample_variable():1031 [1] Resampling seabird25p_oxygen_mll_stbd with frequency 1S following 3 point median filter INFO 2025-10-21 17:26:19,947 resample.py resample_variable():1031 [1] Resampling seabird25p_oxygen_umolkg_stbd with frequency 1S following 3 point median filter INFO 2025-10-21 17:26:20,167 resample.py resample_variable():1031 [1] Resampling seabird25p_beam_transmittance with frequency 1S following 3 point median filter INFO 2025-10-21 17:26:20,377 resample.py resample_variable():1031 [1] Resampling seabird25p_par with frequency 1S following 3 point median filter INFO 2025-10-21 17:26:20,512 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-10-21 17:26:21,031 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/i2map/missionnetcdfs/2022.061.01/i2map_2022.061.01_1S.nc INFO 2025-10-21 17:26:21,035 process.py archive():337 [1] Archiving steps for 2022.061.01 INFO 2025-10-21 17:26:21,036 process.py archive():347 [1] nc_file_base = /data/auv_data/i2map/missionnetcdfs/2022.061.01/i2map_2022.061.01, BASE_PATH = /data/auv_data INFO 2025-10-21 17:26:21,038 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/i2map/missionnetcdfs/2022.061.01/i2map_2022.061.01 files to /Volumes/AUVCTD/surveys/2022/netcdf INFO 2025-10-21 17:26:21,042 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2022/netcdf/i2map_2022.061.01_1S.nc INFO 2025-10-21 17:26:21,090 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2022.061.01/i2map_2022.061.01_1S.nc /Volumes/AUVCTD/surveys/2022/netcdf done. INFO 2025-10-21 17:26:21,092 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2022/netcdf/i2map_2022.061.01_cal.nc INFO 2025-10-21 17:26:21,444 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2022.061.01/i2map_2022.061.01_cal.nc /Volumes/AUVCTD/surveys/2022/netcdf done. INFO 2025-10-21 17:26:21,445 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2022/netcdf/i2map_2022.061.01_align.nc INFO 2025-10-21 17:26:21,771 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2022.061.01/i2map_2022.061.01_align.nc /Volumes/AUVCTD/surveys/2022/netcdf done. INFO 2025-10-21 17:26:21,802 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2022.061.01/gps.nc /Volumes/AUVCTD/missionnetcdfs/2022/2022061/2022.061.01 done. INFO 2025-10-21 17:26:22,179 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2022.061.01/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2022/2022061/2022.061.01 done. INFO 2025-10-21 17:26:22,296 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2022.061.01/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2022/2022061/2022.061.01 done. INFO 2025-10-21 17:26:22,545 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2022.061.01/seabird25p.nc /Volumes/AUVCTD/missionnetcdfs/2022/2022061/2022.061.01 done. INFO 2025-10-21 17:26:22,623 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2022.061.01/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2022/2022061/2022.061.01 done. INFO 2025-10-21 17:26:22,623 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-10-21 17:26:22,623 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2022.061.01/i2map_2022.061.01_processing.log /Volumes/AUVCTD/surveys/2022/netcdf