INFO 2025-10-21 00:24:39,097 process.py process_mission():429 [1] commandline = /src/data/process_i2map.py -v --noinput --start_year 2020 --end_year 2020 --start_yd 1 --end_yd 365 --num_cores 1 --clobber INFO 2025-10-21 00:24:39,097 process.py process_mission():449 [1] Processing i2map mission 2020.266.01 by user docker_user on host 9ec966412b78 INFO 2025-10-21 00:24:39,098 process.py download_process():165 [1] Download and processing steps for 2020.266.01 INFO 2025-10-21 00:24:39,098 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/M3/master/i2MAP/2020/09/20200922/2020.266.01 INFO 2025-10-21 00:24:39,099 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/M3/master/i2MAP/2020/09/20200922/2020.266.01 to /data/auv_data/i2map/missionlogs/2020.266.01 INFO 2025-10-21 00:24:41,805 logs2netcdfs.py download_process_logs():779 [1] Processing mission: i2map 2020.266.01 INFO 2025-10-21 00:24:41,806 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/i2map/missionlogs/2020.266.01/gps.log (1275764 bytes) INFO 2025-10-21 00:24:41,951 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/i2map/missionlogs/2020.266.01/navigation.log (143775284 bytes) INFO 2025-10-21 00:24:52,930 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/i2map/missionlogs/2020.266.01/parosci.log (40412534 bytes) INFO 2025-10-21 00:24:56,352 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/i2map/missionlogs/2020.266.01/seabird25p.log (91982003 bytes) INFO 2025-10-21 00:25:02,403 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/i2map/missionlogs/2020.266.01/seabird25p.log: [ 1 145891 284674 380207] INFO 2025-10-21 00:25:02,768 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/i2map/missionlogs/2020.266.01/tailCone.log (20305675 bytes) INFO 2025-10-21 00:25:05,307 logs2netcdfs.py download_process_logs():807 [1] Time to process: 23.50 seconds INFO 2025-10-21 00:25:05,307 process.py calibrate():227 [1] Calibration steps for 2020.266.01 INFO 2025-10-21 00:25:05,839 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-10-21 00:25:05,841 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-10-21 00:25:06,792 calibrate.py _nudge_pos():1806 [1] 119: 0.090 -0.0021003 0.0122717 51264 170.88 -1.826 13.308 2020-09-22T19:28:32.650739712 INFO 2025-10-21 00:25:08,234 calibrate.py _nudge_pos():1806 [1] 253: 0.160 0.0019456 0.0001045 6325 21.08 13.712 0.919 2020-09-22T19:51:50.654969600 INFO 2025-10-21 00:25:08,794 calibrate.py _nudge_pos():1806 [1] 307: 0.030 0.0015725 0.0007995 2181 7.27 32.149 20.387 2020-09-22T19:59:59.851457536 INFO 2025-10-21 00:25:09,478 calibrate.py _nudge_pos():1806 [1] 373: 0.200 0.0000786 0.0000003 19 0.06 194.692 0.853 2020-09-22T20:01:08.656743936 INFO 2025-10-21 00:25:09,500 calibrate.py _nudge_pos():1806 [1] 375: 0.190 0.0029307 0.0153260 50827 169.42 2.569 16.762 2020-09-22T22:50:35.450270976 INFO 2025-10-21 00:25:10,363 calibrate.py _nudge_pos():1806 [1] 456: 0.180 0.0000123 -0.0000314 15 0.05 39.263 -124.752 2020-09-22T22:51:58.454584832 INFO 2025-10-21 00:25:10,398 calibrate.py _nudge_pos():1806 [1] 459: 0.110 0.0011867 0.0015645 7641 25.47 6.923 11.384 2020-09-22T23:17:28.649759232 INFO 2025-10-21 00:25:11,350 calibrate.py _nudge_pos():1806 [1] 548: 0.160 0.0005363 0.0007821 2895 9.65 8.259 15.023 2020-09-22T23:28:35.654066432 INFO 2025-10-21 00:25:11,565 calibrate.py _nudge_pos():1806 [1] 568: 0.200 0.0004102 0.0006088 2350 7.83 7.783 14.407 2020-09-22T23:36:44.650567680 INFO 2025-10-21 00:25:12,257 calibrate.py _nudge_pos():1806 [1] 633: 0.030 0.0027160 0.0028150 14407 48.02 8.404 10.862 2020-09-23T00:25:50.048794112 INFO 2025-10-21 00:25:12,956 calibrate.py _nudge_pos():1806 [1] 698: 0.190 0.0068518 0.0034912 11300 37.66 27.026 17.176 2020-09-23T01:04:35.049520640 INFO 2025-10-21 00:25:13,388 calibrate.py _nudge_pos():1806 [1] 738: 0.030 0.0015794 0.0037592 14412 48.04 4.886 14.501 2020-09-23T01:53:17.449322496 INFO 2025-10-21 00:25:13,768 calibrate.py _nudge_pos():1806 [1] 773: 0.150 0.0045710 0.0036877 9630 32.10 21.157 21.290 2020-09-23T02:25:57.455052800 INFO 2025-10-21 00:25:14,483 calibrate.py _nudge_pos():1806 [1] 839: 0.180 0.0000491 0.0047567 14341 47.80 0.153 18.440 2020-09-23T03:14:50.654115072 INFO 2025-10-21 00:25:14,495 calibrate.py _nudge_pos():1806 [1] 840: 0.160 0.0000327 0.0047515 40 0.13 37.402 6773.117 2020-09-23T03:14:58.653566976 INFO 2025-10-21 00:25:14,986 calibrate.py _nudge_pos():1806 [1] 885: 0.120 0.0034294 0.0036357 8856 29.52 17.260 22.825 2020-09-23T03:45:13.849217536 INFO 2025-10-21 00:25:15,404 calibrate.py _nudge_pos():1806 [1] 923: 0.110 -0.0000649 -0.0000407 355 1.18 -8.167 -6.391 2020-09-23T03:47:01.851819008 INFO 2025-10-21 00:25:15,820 calibrate.py _nudge_pos():1806 [1] 961: 0.150 0.0001085 -0.0000117 375 1.25 12.928 -1.738 2020-09-23T03:48:53.854146304 INFO 2025-10-21 00:25:17,818 calibrate.py _nudge_pos():1806 [1] 1140: 0.180 0.0001545 0.0015029 3555 11.85 1.937 23.508 2020-09-23T04:03:42.853245696 INFO 2025-10-21 00:25:19,059 calibrate.py _nudge_pos():1806 [1] 1252: 0.040 0.0000160 0.0009797 2500 8.33 0.286 21.793 2020-09-23T04:13:54.051375616 INFO 2025-10-21 00:26:15,206 calibrate.py _nudge_pos():1806 [1] 6249: 0.080 0.0038851 0.0016861 5200 17.33 33.304 18.028 2020-09-23T05:54:30.457853440 INFO 2025-10-21 00:26:15,340 calibrate.py _nudge_pos():1806 [1] 6261: 0.070 0.0000270 -0.0000189 35 0.11 35.448 -30.978 2020-09-23T05:54:48.456620544 INFO 2025-10-21 00:26:15,631 calibrate.py _nudge_pos():1806 [1] 6287: 0.130 0.0034731 0.0145982 52129 173.76 2.969 15.568 2020-09-23T08:49:00.250623744 INFO 2025-10-21 00:26:16,298 calibrate.py _nudge_pos():1806 [1] 6345: 0.160 0.0030342 0.0006011 6810 22.70 19.860 4.908 2020-09-23T09:12:39.253415424 INFO 2025-10-21 00:26:16,563 calibrate.py _nudge_pos():1806 [1] 6368: 0.040 0.0014664 0.0007577 3221 10.73 20.296 13.081 2020-09-23T09:23:46.457708544 INFO 2025-10-21 00:26:17,073 calibrate.py _nudge_pos():1806 [1] 6413: 0.040 0.0044513 0.0142625 50884 169.61 3.898 15.582 2020-09-23T12:14:07.257536000 INFO 2025-10-21 00:26:18,066 calibrate.py _nudge_pos():1806 [1] 6500: 0.110 0.0020488 0.0015692 6786 22.62 13.457 12.856 2020-09-23T12:38:10.248684288 INFO 2025-10-21 00:26:18,593 calibrate.py _nudge_pos():1806 [1] 6546: 0.170 0.0009364 0.0011489 3695 12.31 11.298 17.290 2020-09-23T12:51:14.254976000 INFO 2025-10-21 00:26:19,281 calibrate.py _nudge_pos():1806 [1] 6606: 0.200 0.0007940 0.0008296 2580 8.60 13.722 17.882 2020-09-23T13:00:49.255585792 INFO 2025-10-21 00:26:51,945 calibrate.py _nudge_pos():1806 [1] 9393: 0.030 -0.0000210 0.0000078 15 0.05 -66.995 30.980 2020-09-23T13:47:18.654499072 INFO 2025-10-21 00:28:29,992 calibrate.py _nudge_pos():1862 [1] 17669: - - - 3 0.01 - - INFO 2025-10-21 00:28:29,992 calibrate.py _nudge_pos():1868 [1] Points in final series = 421925 INFO 2025-10-21 00:29:07,715 calibrate.py _read_oxy_coeffs():1189 [1] Looking for calibration file for O2 sensor serial number 2935 on port side INFO 2025-10-21 00:29:07,716 calibrate.py _read_oxy_coeffs():1219 [1] Executing: find "/Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files" -name "2935" INFO 2025-10-21 00:29:07,952 calibrate.py _read_oxy_coeffs():1238 [1] Found calibration date dirs: 2014_Nov 2021_Mar 2022_Apr WARNING 2025-10-21 00:29:07,956 calibrate.py _cal_date_xml_files():1081 [1] Found 4 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/2935/2014_Nov INFO 2025-10-21 00:29:07,956 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-21 00:29:07,961 calibrate.py _cal_date_xml_files():1081 [1] Found 4 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/2935/2021_Mar INFO 2025-10-21 00:29:07,961 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-21 00:29:07,966 calibrate.py _cal_date_xml_files():1081 [1] Found 4 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/2935/2022_Apr INFO 2025-10-21 00:29:07,966 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} INFO 2025-10-21 00:29:07,973 calibrate.py _read_oxy_coeffs():1247 [1] File /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/2935/2022_Apr/Oxygen_SBE43_2935.xml has CalibrationDate 2022-03-22 00:00:00+00:00 INFO 2025-10-21 00:29:07,973 calibrate.py _read_oxy_coeffs():1253 [1] Breaking from loop as /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/2935/2022_Apr/Oxygen_SBE43_2935.xml is after 2020.266.01 with mission_start=2020-09-22T16:35:52.350468864 INFO 2025-10-21 00:29:07,973 calibrate.py _read_oxy_coeffs():1270 [1] File /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/2935/2022_Apr/Oxygen_SBE43_2935.xml is the first calibration file, but is after 2020.266.01 with mission_start=2020-09-22T16:35:52.350468864 INFO 2025-10-21 00:29:20,191 calibrate.py _calibrated_oxygen():2513 [1] dissolvedO2_port: parsed from /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/2935/2022_Apr/Oxygen_SBE43_2935.xml file: {'Soc': 0.42595, 'offset': -0.5339, 'A': -0.0041113, 'B': 0.00020802, 'C': -3.0027e-06, 'D0': 2.5826, 'D1': 0.000192634, 'D2': -0.0464803, 'E': 0.036, 'Tau20': 1.09, 'H1': -0.033, 'H2': 5000.0, 'H3': 1450.0} INFO 2025-10-21 00:29:20,199 calibrate.py _read_oxy_coeffs():1189 [1] Looking for calibration file for O2 sensor serial number 3488 on stbd side INFO 2025-10-21 00:29:20,199 calibrate.py _read_oxy_coeffs():1219 [1] Executing: find "/Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files" -name "3488" INFO 2025-10-21 00:29:20,368 calibrate.py _read_oxy_coeffs():1238 [1] Found calibration date dirs: 2016_dec 2021_mar 2022_Jan WARNING 2025-10-21 00:29:20,372 calibrate.py _cal_date_xml_files():1081 [1] Found 4 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/3488/2016_dec INFO 2025-10-21 00:29:20,372 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-21 00:29:20,377 calibrate.py _cal_date_xml_files():1081 [1] Found 4 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/3488/2021_mar INFO 2025-10-21 00:29:20,377 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-21 00:29:20,381 calibrate.py _cal_date_xml_files():1081 [1] Found 4 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/3488/2022_Jan INFO 2025-10-21 00:29:20,381 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} INFO 2025-10-21 00:29:20,388 calibrate.py _read_oxy_coeffs():1247 [1] File /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/3488/2016_dec/43-3488.xml has CalibrationDate 2016-12-16 00:00:00+00:00 INFO 2025-10-21 00:29:20,388 calibrate.py _read_oxy_coeffs():1263 [1] File /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/3488/2016_dec/43-3488.xml is just before 2020.266.01 with mission_start=2020-09-22T16:35:52.350468864 INFO 2025-10-21 00:29:32,482 calibrate.py _calibrated_oxygen():2513 [1] dissolvedO2_stbd: parsed from /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/3488/2016_dec/43-3488.xml file: {'Soc': 0.44664, 'offset': -0.507, 'A': -0.0030812, 'B': 7.8442e-05, 'C': -9.0601e-07, 'D0': 2.5826, 'D1': 0.000192634, 'D2': -0.0464803, 'E': 0.036, 'Tau20': 1.44, 'H1': -0.033, 'H2': 5000.0, 'H3': 1450.0} INFO 2025-10-21 00:29:48,902 calibrate.py _geometric_depth_correction():3423 [1] seabird25p: d_beg_time_diff: -4 seconds, d_end_time_diff: -1 seconds INFO 2025-10-21 00:29:53,608 calibrate.py _geometric_depth_correction():3423 [1] seabird25p: d_beg_time_diff: -4 seconds, d_end_time_diff: -1 seconds INFO 2025-10-21 00:29:53,616 calibrate.py _ctd_process():2919 [1] Performing range checking of ['seabird25p_salinity'] in 2020.266.01/seabird25p.nc INFO 2025-10-21 00:29:53,619 calibrate.py _range_qc_combined_nc():898 [1] Setting 339 seabird25p_salinity values to NaN INFO 2025-10-21 00:29:53,620 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('seabird25p_salinity', Range(min=30, max=40))] INFO 2025-10-21 00:29:53,620 calibrate.py _range_qc_combined_nc():936 [1] Done range checking seabird25p INFO 2025-10-21 00:29:53,937 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/i2map/missionnetcdfs/2020.266.01/i2map_2020.266.01_cal.nc INFO 2025-10-21 00:30:54,453 calibrate.py write_netcdf():3512 [1] Data variables written: depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, seabird25p_beam_transmittance, seabird25p_conductivity, seabird25p_conductivity_onboard, seabird25p_depth, seabird25p_dissolvedO2_port, seabird25p_dissolvedO2_stbd, seabird25p_oxygen_mll_port, seabird25p_oxygen_mll_stbd, seabird25p_oxygen_umolkg_port, seabird25p_oxygen_umolkg_stbd, seabird25p_par, seabird25p_salinity, seabird25p_salinity_onboard, seabird25p_temperature, seabird25p_temperature_onboard, seabird25p_time, tailcone_propRpm, tailcone_time, time INFO 2025-10-21 00:30:54,458 process.py align():251 [1] Alignment steps for 2020.266.01 INFO 2025-10-21 00:30:54,498 align.py process_cal():139 [1] Processing i2map_2020.266.01_cal.nc from /data/auv_data/i2map/missionnetcdfs/2020.266.01 INFO 2025-10-21 00:30:54,607 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-10-21 00:30:54,618 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-10-21 00:30:54,880 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-10-21 00:30:54,894 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-10-21 00:30:55,157 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-10-21 00:30:55,174 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-10-21 00:30:55,330 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-10-21 00:30:55,330 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-10-21 00:30:55,434 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-10-21 00:30:55,447 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-10-21 00:30:55,745 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2020.266.01_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 00:30:55,766 align.py process_cal():249 [1] seabird25p_temperature: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 00:30:56,136 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2020.266.01_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 00:30:56,159 align.py process_cal():249 [1] seabird25p_conductivity: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 00:30:56,530 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2020.266.01_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 00:30:56,553 align.py process_cal():249 [1] seabird25p_salinity: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 00:30:56,923 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2020.266.01_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 00:30:56,946 align.py process_cal():249 [1] seabird25p_temperature_onboard: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 00:30:57,324 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2020.266.01_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 00:30:57,346 align.py process_cal():249 [1] seabird25p_conductivity_onboard: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 00:30:57,713 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2020.266.01_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 00:30:57,736 align.py process_cal():249 [1] seabird25p_salinity_onboard: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 00:30:58,105 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2020.266.01_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 00:30:58,127 align.py process_cal():249 [1] seabird25p_dissolvedO2_port: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 00:30:58,494 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2020.266.01_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 00:30:58,516 align.py process_cal():249 [1] seabird25p_oxygen_mll_port: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 00:30:58,882 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2020.266.01_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 00:30:58,902 align.py process_cal():249 [1] seabird25p_oxygen_umolkg_port: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 00:30:59,271 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2020.266.01_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 00:30:59,297 align.py process_cal():249 [1] seabird25p_dissolvedO2_stbd: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 00:30:59,666 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2020.266.01_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 00:30:59,686 align.py process_cal():249 [1] seabird25p_oxygen_mll_stbd: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 00:31:00,054 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2020.266.01_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 00:31:00,074 align.py process_cal():249 [1] seabird25p_oxygen_umolkg_stbd: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 00:31:00,442 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2020.266.01_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 00:31:00,462 align.py process_cal():249 [1] seabird25p_beam_transmittance: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 00:31:00,871 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2020.266.01_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 00:31:00,890 align.py process_cal():249 [1] seabird25p_depth: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 00:31:01,261 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2020.266.01_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 00:31:01,293 align.py process_cal():249 [1] seabird25p_par: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 00:31:01,717 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 5.00 INFO 2025-10-21 00:31:01,887 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/i2map/missionnetcdfs/2020.266.01/i2map_2020.266.01_align.nc INFO 2025-10-21 00:31:02,035 align.py write_netcdf():342 [1] Data variables written: navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, seabird25p_beam_transmittance, seabird25p_conductivity, seabird25p_conductivity_onboard, seabird25p_depth, seabird25p_dissolvedO2_port, seabird25p_dissolvedO2_stbd, seabird25p_latitude, seabird25p_longitude, seabird25p_oxygen_mll_port, seabird25p_oxygen_mll_stbd, seabird25p_oxygen_umolkg_port, seabird25p_oxygen_umolkg_stbd, seabird25p_par, seabird25p_salinity, seabird25p_salinity_onboard, seabird25p_temperature, seabird25p_temperature_onboard, seabird25p_time, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-10-21 00:31:02,037 process.py resample():273 [1] Resampling steps for 2020.266.01 INFO 2025-10-21 00:31:02,038 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-10-21 00:31:02,063 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/i2map/missionnetcdfs/2020.266.01/i2map_2020.266.01_align.nc mission netCDF file INFO 2025-10-21 00:31:02,072 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/i2map/missionnetcdfs/2020.266.01/i2map_2020.266.01_align.nc mission netCDF file INFO 2025-10-21 00:31:02,075 resample.py get_mission_start_end():1145 [1] navigation: 2020-09-22T16:36:20.268556288 to 2020-09-23T16:05:52.854937344 (0 days 00:00:00.029997824 before mission_end) INFO 2025-10-21 00:31:02,079 resample.py get_mission_start_end():1145 [1] seabird25p: 2020-09-22T16:35:52.350468864 to 2020-09-23T16:05:52.884935168 (0 days 00:00:00 before mission_end) INFO 2025-10-21 00:31:02,083 resample.py get_mission_start_end():1145 [1] tailcone : 2020-09-22T16:35:46.030901760 to 2020-09-23T16:05:52.794941440 (0 days 00:00:00.089993728 before mission_end) INFO 2025-10-21 00:31:02,084 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/i2map/missionnetcdfs/2020.266.01/i2map_2020.266.01_align.nc mission netCDF file INFO 2025-10-21 00:31:02,084 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-10-21 00:31:03,182 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-10-21 00:31:03,310 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-10-21 00:31:03,435 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-10-21 00:31:03,554 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-10-21 00:31:03,739 resample.py resample_variable():1031 [1] Resampling seabird25p_temperature with frequency 1S following 3 point median filter INFO 2025-10-21 00:31:03,931 resample.py resample_variable():1031 [1] Resampling seabird25p_conductivity with frequency 1S following 3 point median filter INFO 2025-10-21 00:31:04,137 resample.py resample_variable():1031 [1] Resampling seabird25p_salinity with frequency 1S following 3 point median filter INFO 2025-10-21 00:31:04,324 resample.py resample_variable():1031 [1] Resampling seabird25p_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-10-21 00:31:04,514 resample.py resample_variable():1031 [1] Resampling seabird25p_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-10-21 00:31:04,718 resample.py resample_variable():1031 [1] Resampling seabird25p_salinity_onboard with frequency 1S following 3 point median filter INFO 2025-10-21 00:31:04,957 resample.py resample_variable():1031 [1] Resampling seabird25p_dissolvedO2_port with frequency 1S following 3 point median filter INFO 2025-10-21 00:31:05,171 resample.py resample_variable():1031 [1] Resampling seabird25p_oxygen_mll_port with frequency 1S following 3 point median filter INFO 2025-10-21 00:31:05,395 resample.py resample_variable():1031 [1] Resampling seabird25p_oxygen_umolkg_port with frequency 1S following 3 point median filter INFO 2025-10-21 00:31:05,605 resample.py resample_variable():1031 [1] Resampling seabird25p_dissolvedO2_stbd with frequency 1S following 3 point median filter INFO 2025-10-21 00:31:05,817 resample.py resample_variable():1031 [1] Resampling seabird25p_oxygen_mll_stbd with frequency 1S following 3 point median filter INFO 2025-10-21 00:31:06,030 resample.py resample_variable():1031 [1] Resampling seabird25p_oxygen_umolkg_stbd with frequency 1S following 3 point median filter INFO 2025-10-21 00:31:06,261 resample.py resample_variable():1031 [1] Resampling seabird25p_beam_transmittance with frequency 1S following 3 point median filter INFO 2025-10-21 00:31:06,479 resample.py resample_variable():1031 [1] Resampling seabird25p_par with frequency 1S following 3 point median filter INFO 2025-10-21 00:31:06,616 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-10-21 00:31:07,147 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/i2map/missionnetcdfs/2020.266.01/i2map_2020.266.01_1S.nc INFO 2025-10-21 00:31:07,150 process.py archive():337 [1] Archiving steps for 2020.266.01 INFO 2025-10-21 00:31:07,150 process.py archive():347 [1] nc_file_base = /data/auv_data/i2map/missionnetcdfs/2020.266.01/i2map_2020.266.01, BASE_PATH = /data/auv_data INFO 2025-10-21 00:31:07,152 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/i2map/missionnetcdfs/2020.266.01/i2map_2020.266.01 files to /Volumes/AUVCTD/surveys/2020/netcdf INFO 2025-10-21 00:31:07,153 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2020/netcdf/i2map_2020.266.01_1S.nc INFO 2025-10-21 00:31:07,200 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2020.266.01/i2map_2020.266.01_1S.nc /Volumes/AUVCTD/surveys/2020/netcdf done. INFO 2025-10-21 00:31:07,201 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2020/netcdf/i2map_2020.266.01_cal.nc INFO 2025-10-21 00:31:07,548 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2020.266.01/i2map_2020.266.01_cal.nc /Volumes/AUVCTD/surveys/2020/netcdf done. INFO 2025-10-21 00:31:07,549 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2020/netcdf/i2map_2020.266.01_align.nc INFO 2025-10-21 00:31:07,889 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2020.266.01/i2map_2020.266.01_align.nc /Volumes/AUVCTD/surveys/2020/netcdf done. INFO 2025-10-21 00:31:07,902 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2020.266.01/gps.nc /Volumes/AUVCTD/missionnetcdfs/2020/2020266/2020.266.01 done. INFO 2025-10-21 00:31:08,256 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2020.266.01/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2020/2020266/2020.266.01 done. INFO 2025-10-21 00:31:08,366 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2020.266.01/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2020/2020266/2020.266.01 done. INFO 2025-10-21 00:31:08,590 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2020.266.01/seabird25p.nc /Volumes/AUVCTD/missionnetcdfs/2020/2020266/2020.266.01 done. INFO 2025-10-21 00:31:08,669 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2020.266.01/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2020/2020266/2020.266.01 done. INFO 2025-10-21 00:31:08,669 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-10-21 00:31:08,669 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2020.266.01/i2map_2020.266.01_processing.log /Volumes/AUVCTD/surveys/2020/netcdf