INFO 2025-10-21 00:21:07,282 process.py process_mission():429 [1] commandline = /src/data/process_i2map.py -v --noinput --start_year 2020 --end_year 2020 --start_yd 1 --end_yd 365 --num_cores 1 --clobber INFO 2025-10-21 00:21:07,282 process.py process_mission():449 [1] Processing i2map mission 2020.224.04 by user docker_user on host 9ec966412b78 INFO 2025-10-21 00:21:07,282 process.py download_process():165 [1] Download and processing steps for 2020.224.04 INFO 2025-10-21 00:21:07,282 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/M3/master/i2MAP/2020/08/20200811/2020.224.04 INFO 2025-10-21 00:21:07,283 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/M3/master/i2MAP/2020/08/20200811/2020.224.04 to /data/auv_data/i2map/missionlogs/2020.224.04 INFO 2025-10-21 00:21:09,055 logs2netcdfs.py download_process_logs():779 [1] Processing mission: i2map 2020.224.04 INFO 2025-10-21 00:21:09,055 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/i2map/missionlogs/2020.224.04/gps.log (471524 bytes) INFO 2025-10-21 00:21:09,155 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/i2map/missionlogs/2020.224.04/navigation.log (141361964 bytes) INFO 2025-10-21 00:21:20,031 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/i2map/missionlogs/2020.224.04/parosci.log (39733766 bytes) INFO 2025-10-21 00:21:23,356 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/i2map/missionlogs/2020.224.04/seabird25p.log (79792210 bytes) INFO 2025-10-21 00:21:29,056 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/i2map/missionlogs/2020.224.04/tailCone.log (19964059 bytes) INFO 2025-10-21 00:21:31,480 logs2netcdfs.py download_process_logs():807 [1] Time to process: 22.43 seconds INFO 2025-10-21 00:21:31,481 process.py calibrate():227 [1] Calibration steps for 2020.224.04 INFO 2025-10-21 00:21:31,996 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-10-21 00:21:31,998 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-10-21 00:21:33,631 calibrate.py _nudge_pos():1806 [1] 184: 0.080 -0.0020591 0.0024687 34593 115.31 -2.653 3.967 2020-08-11T18:28:04.335623168 INFO 2025-10-21 00:21:34,211 calibrate.py _nudge_pos():1806 [1] 240: 0.130 -0.0003274 0.0006275 2895 9.65 -5.042 12.054 2020-08-11T18:38:38.332191488 INFO 2025-10-21 00:21:37,704 calibrate.py _nudge_pos():1806 [1] 564: 0.160 0.0066568 -0.0001513 38485 128.28 7.711 -0.219 2020-08-11T20:52:19.932674048 INFO 2025-10-21 00:21:38,387 calibrate.py _nudge_pos():1806 [1] 629: 0.130 -0.0000261 -0.0000024 20 0.06 -61.188 -7.095 2020-08-11T20:53:27.938015488 INFO 2025-10-21 00:21:38,409 calibrate.py _nudge_pos():1806 [1] 631: 0.020 0.0034346 0.0009887 4991 16.63 30.679 11.014 2020-08-11T21:10:08.129497856 INFO 2025-10-21 00:21:39,957 calibrate.py _nudge_pos():1806 [1] 778: 0.070 0.0011329 0.0003364 3675 12.25 13.744 5.090 2020-08-11T21:24:49.139144448 INFO 2025-10-21 00:21:41,794 calibrate.py _nudge_pos():1806 [1] 952: 0.130 0.0005443 0.0005673 2775 9.25 8.745 11.368 2020-08-11T21:36:57.139272960 INFO 2025-10-21 00:21:43,760 calibrate.py _nudge_pos():1806 [1] 1133: 0.060 -0.0009725 0.0045102 33818 112.72 -1.282 7.414 2020-08-11T23:32:41.733535744 INFO 2025-10-21 00:21:46,391 calibrate.py _nudge_pos():1806 [1] 1374: 0.100 0.0018944 0.0008936 2350 7.83 35.946 21.148 2020-08-11T23:44:31.734897408 INFO 2025-10-21 00:21:47,375 calibrate.py _nudge_pos():1806 [1] 1465: 0.080 0.0039510 -0.0009603 37908 126.36 4.646 -1.408 2020-08-12T01:52:23.339356416 INFO 2025-10-21 00:21:48,653 calibrate.py _nudge_pos():1806 [1] 1582: 0.180 0.0032112 -0.0003647 5600 18.66 25.564 -3.621 2020-08-12T02:12:59.334684928 INFO 2025-10-21 00:21:49,354 calibrate.py _nudge_pos():1806 [1] 1646: 0.030 0.0007922 0.0005256 2889 9.63 12.227 10.116 2020-08-12T02:23:40.530759936 INFO 2025-10-21 00:21:50,774 calibrate.py _nudge_pos():1806 [1] 1773: 0.060 0.0007274 -0.0000870 2205 7.35 14.712 -2.195 2020-08-12T02:33:07.531917824 INFO 2025-10-21 00:21:52,359 calibrate.py _nudge_pos():1806 [1] 1918: 0.180 0.0001362 0.0026939 18845 62.82 0.322 7.947 2020-08-12T03:38:20.733844992 INFO 2025-10-21 00:21:54,162 calibrate.py _nudge_pos():1806 [1] 2083: 0.180 -0.0018175 0.0021018 14191 47.30 -5.709 8.234 2020-08-12T04:28:22.938180096 INFO 2025-10-21 00:21:54,813 calibrate.py _nudge_pos():1806 [1] 2142: 0.010 0.0001283 -0.0002503 296 0.98 19.379 -47.178 2020-08-12T04:30:21.130083328 INFO 2025-10-21 00:21:55,775 calibrate.py _nudge_pos():1806 [1] 2229: 0.070 -0.0006661 0.0008263 6051 20.17 -4.907 7.592 2020-08-12T04:51:57.131301120 INFO 2025-10-21 00:21:56,905 calibrate.py _nudge_pos():1806 [1] 2331: 0.110 -0.0006686 0.0002825 170 0.56 -176.355 92.938 2020-08-12T04:54:12.132052992 INFO 2025-10-21 00:21:58,202 calibrate.py _nudge_pos():1806 [1] 2448: 0.180 -0.0000149 -0.0003444 670 2.23 -0.993 -28.618 2020-08-12T04:58:22.134926592 INFO 2025-10-21 00:21:59,216 calibrate.py _nudge_pos():1806 [1] 2539: 0.140 0.0005467 0.0000276 820 2.73 29.753 1.876 2020-08-12T05:02:36.137526016 INFO 2025-10-21 00:22:00,008 calibrate.py _nudge_pos():1806 [1] 2610: 0.170 0.0004024 -0.0000477 2000 6.66 8.972 -1.328 2020-08-12T05:10:26.135329024 INFO 2025-10-21 00:22:00,919 calibrate.py _nudge_pos():1806 [1] 2691: 0.200 0.0007901 -0.0002390 1340 4.46 26.301 -9.922 2020-08-12T05:16:14.131489792 INFO 2025-10-21 00:22:11,235 calibrate.py _nudge_pos():1806 [1] 3614: 0.090 0.0003697 0.0001250 1545 5.15 10.674 4.500 2020-08-12T05:36:45.337146368 INFO 2025-10-21 00:22:12,668 calibrate.py _nudge_pos():1806 [1] 3743: 0.010 0.0005500 -0.0001403 1897 6.32 12.931 -4.112 2020-08-12T05:45:12.732387328 INFO 2025-10-21 00:22:13,244 calibrate.py _nudge_pos():1806 [1] 3795: 0.040 -0.0028621 0.0031301 32558 108.52 -3.918 5.345 2020-08-12T07:34:34.932845824 INFO 2025-10-21 00:22:13,971 calibrate.py _nudge_pos():1806 [1] 3859: 0.070 -0.0009183 0.0006061 3560 11.86 -11.500 9.467 2020-08-12T07:47:29.929754880 INFO 2025-10-21 00:22:14,885 calibrate.py _nudge_pos():1806 [1] 3941: 0.040 0.0069947 -0.0003543 36763 122.54 8.482 -0.536 2020-08-12T09:51:23.530518272 INFO 2025-10-21 00:22:14,899 calibrate.py _nudge_pos():1806 [1] 3942: 0.050 0.0069572 -0.0003482 30 0.10 10694.967 -667.532 2020-08-12T09:51:29.530107392 INFO 2025-10-21 00:22:15,888 calibrate.py _nudge_pos():1806 [1] 4029: 0.120 0.0019727 0.0003269 4890 16.30 17.985 3.717 2020-08-12T10:09:14.537149440 INFO 2025-10-21 00:22:17,139 calibrate.py _nudge_pos():1806 [1] 4138: 0.020 -0.0004302 -0.0002165 2800 9.33 -6.851 -4.299 2020-08-12T10:20:22.731375104 INFO 2025-10-21 00:22:21,689 calibrate.py _nudge_pos():1806 [1] 4538: 0.060 0.0008267 0.0002616 2500 8.33 14.745 5.820 2020-08-12T10:35:21.729789184 INFO 2025-10-21 00:22:22,442 calibrate.py _nudge_pos():1806 [1] 4604: 0.150 -0.0020188 0.0021226 33342 111.14 -2.699 3.539 2020-08-12T12:27:35.138519296 INFO 2025-10-21 00:22:25,993 calibrate.py _nudge_pos():1806 [1] 4914: 0.200 0.0002748 0.0004564 2240 7.46 5.471 11.331 2020-08-12T12:40:12.136661248 INFO 2025-10-21 00:22:37,267 calibrate.py _nudge_pos():1806 [1] 5887: 0.040 0.0047556 0.0003004 36578 121.92 5.796 0.457 2020-08-12T14:58:19.938908160 INFO 2025-10-21 00:22:38,098 calibrate.py _nudge_pos():1806 [1] 5958: 0.100 0.0014544 -0.0002317 4450 14.83 14.571 -2.895 2020-08-12T15:14:19.933143808 INFO 2025-10-21 00:22:42,496 calibrate.py _nudge_pos():1806 [1] 6333: 0.180 0.0005614 -0.0001383 3685 12.28 6.793 -2.086 2020-08-12T15:32:50.937034752 INFO 2025-10-21 00:22:44,855 calibrate.py _nudge_pos():1862 [1] 6499: - - - 0 0.00 - - INFO 2025-10-21 00:22:44,856 calibrate.py _nudge_pos():1868 [1] Points in final series = 415382 INFO 2025-10-21 00:22:46,396 calibrate.py _read_oxy_coeffs():1189 [1] Looking for calibration file for O2 sensor serial number 2935 on port side INFO 2025-10-21 00:22:46,398 calibrate.py _read_oxy_coeffs():1219 [1] Executing: find "/Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files" -name "2935" INFO 2025-10-21 00:22:46,630 calibrate.py _read_oxy_coeffs():1238 [1] Found calibration date dirs: 2014_Nov 2021_Mar 2022_Apr WARNING 2025-10-21 00:22:46,634 calibrate.py _cal_date_xml_files():1081 [1] Found 4 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/2935/2014_Nov INFO 2025-10-21 00:22:46,634 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-21 00:22:46,639 calibrate.py _cal_date_xml_files():1081 [1] Found 4 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/2935/2021_Mar INFO 2025-10-21 00:22:46,639 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-21 00:22:46,643 calibrate.py _cal_date_xml_files():1081 [1] Found 4 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/2935/2022_Apr INFO 2025-10-21 00:22:46,644 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} INFO 2025-10-21 00:22:46,650 calibrate.py _read_oxy_coeffs():1247 [1] File /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/2935/2022_Apr/Oxygen_SBE43_2935.xml has CalibrationDate 2022-03-22 00:00:00+00:00 INFO 2025-10-21 00:22:46,650 calibrate.py _read_oxy_coeffs():1253 [1] Breaking from loop as /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/2935/2022_Apr/Oxygen_SBE43_2935.xml is after 2020.224.04 with mission_start=2020-08-11T16:30:00.170921728 INFO 2025-10-21 00:22:46,650 calibrate.py _read_oxy_coeffs():1270 [1] File /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/2935/2022_Apr/Oxygen_SBE43_2935.xml is the first calibration file, but is after 2020.224.04 with mission_start=2020-08-11T16:30:00.170921728 INFO 2025-10-21 00:22:46,896 calibrate.py _calibrated_oxygen():2513 [1] dissolvedO2_port: parsed from /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/2935/2022_Apr/Oxygen_SBE43_2935.xml file: {'Soc': 0.42595, 'offset': -0.5339, 'A': -0.0041113, 'B': 0.00020802, 'C': -3.0027e-06, 'D0': 2.5826, 'D1': 0.000192634, 'D2': -0.0464803, 'E': 0.036, 'Tau20': 1.09, 'H1': -0.033, 'H2': 5000.0, 'H3': 1450.0} INFO 2025-10-21 00:22:46,905 calibrate.py _read_oxy_coeffs():1189 [1] Looking for calibration file for O2 sensor serial number 3488 on stbd side INFO 2025-10-21 00:22:46,905 calibrate.py _read_oxy_coeffs():1219 [1] Executing: find "/Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files" -name "3488" INFO 2025-10-21 00:22:47,078 calibrate.py _read_oxy_coeffs():1238 [1] Found calibration date dirs: 2016_dec 2021_mar 2022_Jan WARNING 2025-10-21 00:22:47,083 calibrate.py _cal_date_xml_files():1081 [1] Found 4 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/3488/2016_dec INFO 2025-10-21 00:22:47,083 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-21 00:22:47,087 calibrate.py _cal_date_xml_files():1081 [1] Found 4 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/3488/2021_mar INFO 2025-10-21 00:22:47,087 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-21 00:22:47,091 calibrate.py _cal_date_xml_files():1081 [1] Found 4 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/3488/2022_Jan INFO 2025-10-21 00:22:47,091 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} INFO 2025-10-21 00:22:47,097 calibrate.py _read_oxy_coeffs():1247 [1] File /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/3488/2016_dec/43-3488.xml has CalibrationDate 2016-12-16 00:00:00+00:00 INFO 2025-10-21 00:22:47,097 calibrate.py _read_oxy_coeffs():1263 [1] File /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/3488/2016_dec/43-3488.xml is just before 2020.224.04 with mission_start=2020-08-11T16:30:00.170921728 INFO 2025-10-21 00:22:47,339 calibrate.py _calibrated_oxygen():2513 [1] dissolvedO2_stbd: parsed from /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/3488/2016_dec/43-3488.xml file: {'Soc': 0.44664, 'offset': -0.507, 'A': -0.0030812, 'B': 7.8442e-05, 'C': -9.0601e-07, 'D0': 2.5826, 'D1': 0.000192634, 'D2': -0.0464803, 'E': 0.036, 'Tau20': 1.44, 'H1': -0.033, 'H2': 5000.0, 'H3': 1450.0} INFO 2025-10-21 00:22:51,967 calibrate.py _geometric_depth_correction():3423 [1] seabird25p: d_beg_time_diff: 3 seconds, d_end_time_diff: 0 seconds INFO 2025-10-21 00:22:56,610 calibrate.py _geometric_depth_correction():3423 [1] seabird25p: d_beg_time_diff: 3 seconds, d_end_time_diff: 0 seconds INFO 2025-10-21 00:22:56,619 calibrate.py _ctd_process():2919 [1] Performing range checking of ['seabird25p_salinity'] in 2020.224.04/seabird25p.nc WARNING 2025-10-21 00:22:56,622 calibrate.py _range_qc_combined_nc():890 [1] More than 500 (1258) seabird25p_salinity values found outside of range. This may indicate a problem with the seabird25p data. INFO 2025-10-21 00:22:56,622 calibrate.py _range_qc_combined_nc():898 [1] Setting 1258 seabird25p_salinity values to NaN INFO 2025-10-21 00:22:56,622 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('seabird25p_salinity', Range(min=30, max=40))] INFO 2025-10-21 00:22:56,622 calibrate.py _range_qc_combined_nc():936 [1] Done range checking seabird25p INFO 2025-10-21 00:22:56,933 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/i2map/missionnetcdfs/2020.224.04/i2map_2020.224.04_cal.nc INFO 2025-10-21 00:22:57,156 calibrate.py write_netcdf():3512 [1] Data variables written: depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, seabird25p_beam_transmittance, seabird25p_conductivity, seabird25p_conductivity_onboard, seabird25p_depth, seabird25p_dissolvedO2_port, seabird25p_dissolvedO2_stbd, seabird25p_oxygen_mll_port, seabird25p_oxygen_mll_stbd, seabird25p_oxygen_umolkg_port, seabird25p_oxygen_umolkg_stbd, seabird25p_salinity, seabird25p_salinity_onboard, seabird25p_temperature, seabird25p_temperature_onboard, seabird25p_time, tailcone_propRpm, tailcone_time, time INFO 2025-10-21 00:22:57,160 process.py align():251 [1] Alignment steps for 2020.224.04 INFO 2025-10-21 00:22:57,199 align.py process_cal():139 [1] Processing i2map_2020.224.04_cal.nc from /data/auv_data/i2map/missionnetcdfs/2020.224.04 INFO 2025-10-21 00:22:57,304 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-10-21 00:22:57,314 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-10-21 00:22:57,572 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-10-21 00:22:57,587 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-10-21 00:22:57,836 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-10-21 00:22:57,850 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-10-21 00:22:58,002 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-10-21 00:22:58,002 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-10-21 00:22:58,110 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-10-21 00:22:58,124 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-10-21 00:22:58,399 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2020.224.04_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 00:22:58,421 align.py process_cal():249 [1] seabird25p_temperature: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 00:22:58,786 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2020.224.04_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 00:22:58,810 align.py process_cal():249 [1] seabird25p_conductivity: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 00:22:59,173 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2020.224.04_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 00:22:59,196 align.py process_cal():249 [1] seabird25p_salinity: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 00:22:59,555 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2020.224.04_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 00:22:59,579 align.py process_cal():249 [1] seabird25p_temperature_onboard: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 00:22:59,941 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2020.224.04_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 00:22:59,964 align.py process_cal():249 [1] seabird25p_conductivity_onboard: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 00:23:00,325 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2020.224.04_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 00:23:00,355 align.py process_cal():249 [1] seabird25p_salinity_onboard: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 00:23:00,716 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2020.224.04_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 00:23:00,738 align.py process_cal():249 [1] seabird25p_dissolvedO2_port: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 00:23:01,098 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2020.224.04_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 00:23:01,119 align.py process_cal():249 [1] seabird25p_oxygen_mll_port: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 00:23:01,480 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2020.224.04_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 00:23:01,501 align.py process_cal():249 [1] seabird25p_oxygen_umolkg_port: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 00:23:01,863 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2020.224.04_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 00:23:01,883 align.py process_cal():249 [1] seabird25p_dissolvedO2_stbd: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 00:23:02,243 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2020.224.04_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 00:23:02,269 align.py process_cal():249 [1] seabird25p_oxygen_mll_stbd: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 00:23:02,629 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2020.224.04_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 00:23:02,649 align.py process_cal():249 [1] seabird25p_oxygen_umolkg_stbd: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 00:23:03,009 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2020.224.04_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 00:23:03,030 align.py process_cal():249 [1] seabird25p_beam_transmittance: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 00:23:03,386 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2020.224.04_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 00:23:03,405 align.py process_cal():249 [1] seabird25p_depth: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 00:23:03,798 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 5.00 INFO 2025-10-21 00:23:03,963 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/i2map/missionnetcdfs/2020.224.04/i2map_2020.224.04_align.nc INFO 2025-10-21 00:23:04,107 align.py write_netcdf():342 [1] Data variables written: navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, seabird25p_beam_transmittance, seabird25p_conductivity, seabird25p_conductivity_onboard, seabird25p_depth, seabird25p_dissolvedO2_port, seabird25p_dissolvedO2_stbd, seabird25p_latitude, seabird25p_longitude, seabird25p_oxygen_mll_port, seabird25p_oxygen_mll_stbd, seabird25p_oxygen_umolkg_port, seabird25p_oxygen_umolkg_stbd, seabird25p_salinity, seabird25p_salinity_onboard, seabird25p_temperature, seabird25p_temperature_onboard, seabird25p_time, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-10-21 00:23:04,109 process.py resample():273 [1] Resampling steps for 2020.224.04 INFO 2025-10-21 00:23:04,110 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-10-21 00:23:04,135 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/i2map/missionnetcdfs/2020.224.04/i2map_2020.224.04_align.nc mission netCDF file INFO 2025-10-21 00:23:04,144 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/i2map/missionnetcdfs/2020.224.04/i2map_2020.224.04_align.nc mission netCDF file INFO 2025-10-21 00:23:04,147 resample.py get_mission_start_end():1145 [1] navigation: 2020-08-11T16:30:21.559456512 to 2020-08-12T15:36:14.133115136 (0 days 00:00:00 before mission_end) INFO 2025-10-21 00:23:04,153 resample.py get_mission_start_end():1145 [1] seabird25p: 2020-08-11T16:30:00.170921728 to 2020-08-12T15:36:14.093117696 (0 days 00:00:00.039997440 before mission_end) INFO 2025-10-21 00:23:04,157 resample.py get_mission_start_end():1145 [1] tailcone : 2020-08-11T16:29:48.241739008 to 2020-08-12T15:36:14.013123328 (0 days 00:00:00.119991808 before mission_end) INFO 2025-10-21 00:23:04,158 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/i2map/missionnetcdfs/2020.224.04/i2map_2020.224.04_align.nc mission netCDF file INFO 2025-10-21 00:23:04,159 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-10-21 00:23:05,231 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-10-21 00:23:05,382 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-10-21 00:23:05,504 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-10-21 00:23:05,629 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-10-21 00:23:05,811 resample.py resample_variable():1031 [1] Resampling seabird25p_temperature with frequency 1S following 3 point median filter INFO 2025-10-21 00:23:05,997 resample.py resample_variable():1031 [1] Resampling seabird25p_conductivity with frequency 1S following 3 point median filter INFO 2025-10-21 00:23:06,201 resample.py resample_variable():1031 [1] Resampling seabird25p_salinity with frequency 1S following 3 point median filter INFO 2025-10-21 00:23:06,388 resample.py resample_variable():1031 [1] Resampling seabird25p_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-10-21 00:23:06,578 resample.py resample_variable():1031 [1] Resampling seabird25p_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-10-21 00:23:06,768 resample.py resample_variable():1031 [1] Resampling seabird25p_salinity_onboard with frequency 1S following 3 point median filter INFO 2025-10-21 00:23:06,957 resample.py resample_variable():1031 [1] Resampling seabird25p_dissolvedO2_port with frequency 1S following 3 point median filter INFO 2025-10-21 00:23:07,156 resample.py resample_variable():1031 [1] Resampling seabird25p_oxygen_mll_port with frequency 1S following 3 point median filter INFO 2025-10-21 00:23:07,357 resample.py resample_variable():1031 [1] Resampling seabird25p_oxygen_umolkg_port with frequency 1S following 3 point median filter INFO 2025-10-21 00:23:07,561 resample.py resample_variable():1031 [1] Resampling seabird25p_dissolvedO2_stbd with frequency 1S following 3 point median filter INFO 2025-10-21 00:23:07,766 resample.py resample_variable():1031 [1] Resampling seabird25p_oxygen_mll_stbd with frequency 1S following 3 point median filter INFO 2025-10-21 00:23:07,970 resample.py resample_variable():1031 [1] Resampling seabird25p_oxygen_umolkg_stbd with frequency 1S following 3 point median filter INFO 2025-10-21 00:23:08,175 resample.py resample_variable():1031 [1] Resampling seabird25p_beam_transmittance with frequency 1S following 3 point median filter INFO 2025-10-21 00:23:08,308 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-10-21 00:23:08,821 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/i2map/missionnetcdfs/2020.224.04/i2map_2020.224.04_1S.nc INFO 2025-10-21 00:23:08,824 process.py archive():337 [1] Archiving steps for 2020.224.04 INFO 2025-10-21 00:23:08,824 process.py archive():347 [1] nc_file_base = /data/auv_data/i2map/missionnetcdfs/2020.224.04/i2map_2020.224.04, BASE_PATH = /data/auv_data INFO 2025-10-21 00:23:08,825 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/i2map/missionnetcdfs/2020.224.04/i2map_2020.224.04 files to /Volumes/AUVCTD/surveys/2020/netcdf INFO 2025-10-21 00:23:08,826 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2020/netcdf/i2map_2020.224.04_1S.nc INFO 2025-10-21 00:23:08,869 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2020.224.04/i2map_2020.224.04_1S.nc /Volumes/AUVCTD/surveys/2020/netcdf done. INFO 2025-10-21 00:23:08,870 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2020/netcdf/i2map_2020.224.04_cal.nc INFO 2025-10-21 00:23:09,198 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2020.224.04/i2map_2020.224.04_cal.nc /Volumes/AUVCTD/surveys/2020/netcdf done. INFO 2025-10-21 00:23:09,199 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2020/netcdf/i2map_2020.224.04_align.nc INFO 2025-10-21 00:23:09,494 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2020.224.04/i2map_2020.224.04_align.nc /Volumes/AUVCTD/surveys/2020/netcdf done. INFO 2025-10-21 00:23:09,503 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2020.224.04/gps.nc /Volumes/AUVCTD/missionnetcdfs/2020/2020224/2020.224.04 done. INFO 2025-10-21 00:23:09,832 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2020.224.04/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2020/2020224/2020.224.04 done. INFO 2025-10-21 00:23:09,944 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2020.224.04/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2020/2020224/2020.224.04 done. INFO 2025-10-21 00:23:10,143 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2020.224.04/seabird25p.nc /Volumes/AUVCTD/missionnetcdfs/2020/2020224/2020.224.04 done. INFO 2025-10-21 00:23:10,210 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2020.224.04/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2020/2020224/2020.224.04 done. INFO 2025-10-21 00:23:10,210 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-10-21 00:23:10,211 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2020.224.04/i2map_2020.224.04_processing.log /Volumes/AUVCTD/surveys/2020/netcdf