INFO 2025-10-21 00:16:59,006 process.py process_mission():429 [1] commandline = /src/data/process_i2map.py -v --noinput --start_year 2020 --end_year 2020 --start_yd 1 --end_yd 365 --num_cores 1 --clobber INFO 2025-10-21 00:16:59,006 process.py process_mission():449 [1] Processing i2map mission 2020.210.03 by user docker_user on host 9ec966412b78 INFO 2025-10-21 00:16:59,006 process.py download_process():165 [1] Download and processing steps for 2020.210.03 INFO 2025-10-21 00:16:59,006 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/M3/master/i2MAP/2020/07/20200728/2020.210.03 INFO 2025-10-21 00:16:59,007 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/M3/master/i2MAP/2020/07/20200728/2020.210.03 to /data/auv_data/i2map/missionlogs/2020.210.03 INFO 2025-10-21 00:17:00,564 logs2netcdfs.py download_process_logs():779 [1] Processing mission: i2map 2020.210.03 INFO 2025-10-21 00:17:00,564 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/i2map/missionlogs/2020.210.03/gps.log (1321484 bytes) INFO 2025-10-21 00:17:00,709 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/i2map/missionlogs/2020.210.03/navigation.log (145122024 bytes) INFO 2025-10-21 00:17:11,863 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/i2map/missionlogs/2020.210.03/parosci.log (40790774 bytes) INFO 2025-10-21 00:17:15,107 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/i2map/missionlogs/2020.210.03/parosci.log: [89431 89432] INFO 2025-10-21 00:17:15,221 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/i2map/missionlogs/2020.210.03/seabird25p.log (4796170 bytes) INFO 2025-10-21 00:17:15,565 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/i2map/missionlogs/2020.210.03/tailCone.log (20495611 bytes) INFO 2025-10-21 00:17:17,999 logs2netcdfs.py download_process_logs():807 [1] Time to process: 17.44 seconds INFO 2025-10-21 00:17:18,000 process.py calibrate():227 [1] Calibration steps for 2020.210.03 INFO 2025-10-21 00:17:18,445 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-10-21 00:17:18,447 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-10-21 00:17:20,053 calibrate.py _nudge_pos():1806 [1] 184: 0.130 -0.0055664 0.0002842 33817 112.72 -7.337 0.467 2020-07-28T19:10:16.694040064 INFO 2025-10-21 00:17:28,698 calibrate.py _nudge_pos():1806 [1] 1018: 0.020 -0.0012441 -0.0001319 1966 6.55 -28.221 -3.732 2020-07-28T19:30:42.890039808 INFO 2025-10-21 00:17:37,405 calibrate.py _nudge_pos():1806 [1] 1853: 0.030 -0.0051028 -0.0042349 36003 120.01 -6.318 -6.539 2020-07-28T21:44:37.489632256 INFO 2025-10-21 00:17:51,206 calibrate.py _nudge_pos():1806 [1] 3090: 0.160 -0.0002488 0.0008849 3305 11.01 -3.357 14.888 2020-07-28T22:16:14.489678592 INFO 2025-10-21 00:17:58,347 calibrate.py _nudge_pos():1806 [1] 3743: 0.080 -0.0006166 0.0009849 3295 10.98 -8.344 16.621 2020-07-28T22:38:05.689855232 INFO 2025-10-21 00:18:06,081 calibrate.py _nudge_pos():1806 [1] 4457: 0.170 -0.0002726 0.0008756 2890 9.63 -4.206 16.849 2020-07-28T22:59:36.691415552 INFO 2025-10-21 00:18:09,017 calibrate.py _nudge_pos():1806 [1] 4732: 0.070 -0.0040518 0.0008306 32683 108.94 -5.526 1.413 2020-07-29T00:53:07.294857216 INFO 2025-10-21 00:18:11,810 calibrate.py _nudge_pos():1806 [1] 4989: 0.150 0.0003043 0.0004749 3455 11.51 3.927 7.644 2020-07-29T01:08:54.289983744 INFO 2025-10-21 00:18:14,671 calibrate.py _nudge_pos():1806 [1] 5252: 0.130 -0.0066604 -0.0046612 36543 121.81 -8.125 -7.091 2020-07-29T03:15:04.891362048 INFO 2025-10-21 00:18:30,408 calibrate.py _nudge_pos():1806 [1] 6672: 0.080 0.0006235 -0.0000146 3985 13.28 6.975 -0.204 2020-07-29T03:52:01.089541888 INFO 2025-10-21 00:18:34,072 calibrate.py _nudge_pos():1806 [1] 6999: 0.140 0.0005209 0.0001047 2035 6.78 11.414 2.860 2020-07-29T04:04:15.089259520 INFO 2025-10-21 00:18:36,744 calibrate.py _nudge_pos():1806 [1] 7241: 0.170 0.0001090 0.0000117 1880 6.26 2.586 0.347 2020-07-29T04:14:32.096991744 INFO 2025-10-21 00:18:39,740 calibrate.py _nudge_pos():1806 [1] 7512: 0.200 0.0000224 -0.0000065 14 0.04 76.821 -27.718 2020-07-29T04:19:05.088290560 INFO 2025-10-21 00:18:39,938 calibrate.py _nudge_pos():1806 [1] 7530: 0.010 -0.0002313 0.0003461 261 0.87 -39.653 73.996 2020-07-29T04:20:14.293549568 INFO 2025-10-21 00:18:43,870 calibrate.py _nudge_pos():1806 [1] 7884: 0.060 0.0003894 -0.0006425 2745 9.15 6.326 -13.017 2020-07-29T04:35:16.291758592 INFO 2025-10-21 00:18:46,704 calibrate.py _nudge_pos():1806 [1] 8138: 0.120 0.0007484 0.0000013 245 0.81 136.730 0.291 2020-07-29T04:40:18.291070208 INFO 2025-10-21 00:18:50,855 calibrate.py _nudge_pos():1806 [1] 8515: 0.150 -0.0006189 -0.0005288 3680 12.26 -7.498 -7.991 2020-07-29T04:58:50.294892544 INFO 2025-10-21 00:18:54,488 calibrate.py _nudge_pos():1806 [1] 8844: 0.010 0.0001896 0.0001079 210 0.70 40.431 28.702 2020-07-29T05:05:00.489532416 INFO 2025-10-21 00:18:57,783 calibrate.py _nudge_pos():1806 [1] 9136: 0.080 -0.0006180 0.0001451 2655 8.85 -10.379 3.040 2020-07-29T05:18:42.493221632 INFO 2025-10-21 00:19:03,138 calibrate.py _nudge_pos():1806 [1] 9608: 0.110 -0.0005779 0.0000732 1185 3.95 -21.757 3.437 2020-07-29T05:30:31.494651648 INFO 2025-10-21 00:19:11,198 calibrate.py _nudge_pos():1806 [1] 10331: 0.200 -0.0000702 0.0001023 2500 8.33 -1.252 2.275 2020-07-29T05:50:53.490939136 INFO 2025-10-21 00:19:22,811 calibrate.py _nudge_pos():1806 [1] 11368: 0.130 0.0000161 0.0000944 1060 3.53 0.676 4.956 2020-07-29T06:11:41.695431168 INFO 2025-10-21 00:19:33,594 calibrate.py _nudge_pos():1806 [1] 12334: 0.200 0.0001164 0.0000412 2155 7.18 2.408 1.064 2020-07-29T06:34:58.689730560 INFO 2025-10-21 00:19:37,674 calibrate.py _nudge_pos():1806 [1] 12682: 0.060 -0.0001586 0.0000061 1960 6.53 -3.608 0.172 2020-07-29T06:47:17.889092096 INFO 2025-10-21 00:19:41,795 calibrate.py _nudge_pos():1806 [1] 13048: 0.160 -0.0037784 -0.0056445 32392 107.97 -5.200 -9.687 2020-07-29T08:41:22.290218240 INFO 2025-10-21 00:19:47,421 calibrate.py _nudge_pos():1806 [1] 13542: 0.080 -0.0012744 0.0006784 4391 14.63 -12.940 8.590 2020-07-29T09:04:14.496215808 INFO 2025-10-21 00:19:53,150 calibrate.py _nudge_pos():1806 [1] 14043: 0.150 -0.0031519 -0.0052209 37077 123.59 -3.790 -7.828 2020-07-29T11:16:10.093960192 INFO 2025-10-21 00:19:54,567 calibrate.py _nudge_pos():1806 [1] 14165: 0.080 0.0000214 0.0000141 15 0.05 68.214 55.832 2020-07-29T11:18:14.095465472 INFO 2025-10-21 00:19:57,792 calibrate.py _nudge_pos():1806 [1] 14439: 0.160 -0.0012260 0.0017568 6550 21.83 -8.344 14.913 2020-07-29T11:44:37.097022464 INFO 2025-10-21 00:20:07,087 calibrate.py _nudge_pos():1806 [1] 15247: 0.100 -0.0011670 0.0006317 2535 8.45 -20.527 13.857 2020-07-29T12:06:31.296993536 INFO 2025-10-21 00:20:13,678 calibrate.py _nudge_pos():1806 [1] 15818: 0.180 -0.0006743 0.0004174 2750 9.16 -10.934 8.440 2020-07-29T12:25:11.290268928 INFO 2025-10-21 00:20:18,051 calibrate.py _nudge_pos():1806 [1] 16194: 0.090 -0.0053829 -0.0047951 32532 108.44 -7.376 -8.194 2020-07-29T14:19:52.888847104 INFO 2025-10-21 00:20:42,859 calibrate.py _nudge_pos():1806 [1] 18313: 0.010 -0.0068753 -0.0066829 36677 122.26 -8.357 -10.129 2020-07-29T16:57:26.691217152 INFO 2025-10-21 00:20:43,208 calibrate.py _nudge_pos():1862 [1] 18302: - - - 2 0.00 - - INFO 2025-10-21 00:20:43,208 calibrate.py _nudge_pos():1868 [1] Points in final series = 425894 INFO 2025-10-21 00:20:58,935 calibrate.py _read_oxy_coeffs():1189 [1] Looking for calibration file for O2 sensor serial number 2935 on port side INFO 2025-10-21 00:20:58,937 calibrate.py _read_oxy_coeffs():1219 [1] Executing: find "/Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files" -name "2935" INFO 2025-10-21 00:20:59,157 calibrate.py _read_oxy_coeffs():1238 [1] Found calibration date dirs: 2014_Nov 2021_Mar 2022_Apr WARNING 2025-10-21 00:20:59,161 calibrate.py _cal_date_xml_files():1081 [1] Found 4 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/2935/2014_Nov INFO 2025-10-21 00:20:59,161 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-21 00:20:59,165 calibrate.py _cal_date_xml_files():1081 [1] Found 4 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/2935/2021_Mar INFO 2025-10-21 00:20:59,165 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-21 00:20:59,170 calibrate.py _cal_date_xml_files():1081 [1] Found 4 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/2935/2022_Apr INFO 2025-10-21 00:20:59,170 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} INFO 2025-10-21 00:20:59,176 calibrate.py _read_oxy_coeffs():1247 [1] File /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/2935/2022_Apr/Oxygen_SBE43_2935.xml has CalibrationDate 2022-03-22 00:00:00+00:00 INFO 2025-10-21 00:20:59,177 calibrate.py _read_oxy_coeffs():1253 [1] Breaking from loop as /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/2935/2022_Apr/Oxygen_SBE43_2935.xml is after 2020.210.03 with mission_start=2020-07-28T17:14:47.808701184 INFO 2025-10-21 00:20:59,177 calibrate.py _read_oxy_coeffs():1270 [1] File /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/2935/2022_Apr/Oxygen_SBE43_2935.xml is the first calibration file, but is after 2020.210.03 with mission_start=2020-07-28T17:14:47.808701184 INFO 2025-10-21 00:20:59,260 calibrate.py _calibrated_oxygen():2513 [1] dissolvedO2_port: parsed from /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/2935/2022_Apr/Oxygen_SBE43_2935.xml file: {'Soc': 0.42595, 'offset': -0.5339, 'A': -0.0041113, 'B': 0.00020802, 'C': -3.0027e-06, 'D0': 2.5826, 'D1': 0.000192634, 'D2': -0.0464803, 'E': 0.036, 'Tau20': 1.09, 'H1': -0.033, 'H2': 5000.0, 'H3': 1450.0} INFO 2025-10-21 00:20:59,265 calibrate.py _read_oxy_coeffs():1189 [1] Looking for calibration file for O2 sensor serial number 3488 on stbd side INFO 2025-10-21 00:20:59,265 calibrate.py _read_oxy_coeffs():1219 [1] Executing: find "/Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files" -name "3488" INFO 2025-10-21 00:20:59,442 calibrate.py _read_oxy_coeffs():1238 [1] Found calibration date dirs: 2016_dec 2021_mar 2022_Jan WARNING 2025-10-21 00:20:59,446 calibrate.py _cal_date_xml_files():1081 [1] Found 4 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/3488/2016_dec INFO 2025-10-21 00:20:59,446 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-21 00:20:59,450 calibrate.py _cal_date_xml_files():1081 [1] Found 4 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/3488/2021_mar INFO 2025-10-21 00:20:59,450 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-21 00:20:59,455 calibrate.py _cal_date_xml_files():1081 [1] Found 4 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/3488/2022_Jan INFO 2025-10-21 00:20:59,455 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} INFO 2025-10-21 00:20:59,460 calibrate.py _read_oxy_coeffs():1247 [1] File /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/3488/2016_dec/43-3488.xml has CalibrationDate 2016-12-16 00:00:00+00:00 INFO 2025-10-21 00:20:59,460 calibrate.py _read_oxy_coeffs():1263 [1] File /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/3488/2016_dec/43-3488.xml is just before 2020.210.03 with mission_start=2020-07-28T17:14:47.808701184 INFO 2025-10-21 00:20:59,543 calibrate.py _calibrated_oxygen():2513 [1] dissolvedO2_stbd: parsed from /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/3488/2016_dec/43-3488.xml file: {'Soc': 0.44664, 'offset': -0.507, 'A': -0.0030812, 'B': 7.8442e-05, 'C': -9.0601e-07, 'D0': 2.5826, 'D1': 0.000192634, 'D2': -0.0464803, 'E': 0.036, 'Tau20': 1.44, 'H1': -0.033, 'H2': 5000.0, 'H3': 1450.0} INFO 2025-10-21 00:20:59,926 calibrate.py _geometric_depth_correction():3423 [1] seabird25p: d_beg_time_diff: 3 seconds, d_end_time_diff: -80389 seconds INFO 2025-10-21 00:21:00,308 calibrate.py _geometric_depth_correction():3423 [1] seabird25p: d_beg_time_diff: 3 seconds, d_end_time_diff: -80389 seconds INFO 2025-10-21 00:21:00,310 calibrate.py _ctd_process():2919 [1] Performing range checking of ['seabird25p_salinity'] in 2020.210.03/seabird25p.nc INFO 2025-10-21 00:21:00,311 calibrate.py _range_qc_combined_nc():898 [1] Setting 1 seabird25p_salinity values to NaN INFO 2025-10-21 00:21:00,311 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('seabird25p_salinity', Range(min=30, max=40))] INFO 2025-10-21 00:21:00,311 calibrate.py _range_qc_combined_nc():936 [1] Done range checking seabird25p INFO 2025-10-21 00:21:00,629 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/i2map/missionnetcdfs/2020.210.03/i2map_2020.210.03_cal.nc INFO 2025-10-21 00:21:00,774 calibrate.py write_netcdf():3512 [1] Data variables written: depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, seabird25p_beam_transmittance, seabird25p_conductivity, seabird25p_conductivity_onboard, seabird25p_depth, seabird25p_dissolvedO2_port, seabird25p_dissolvedO2_stbd, seabird25p_oxygen_mll_port, seabird25p_oxygen_mll_stbd, seabird25p_oxygen_umolkg_port, seabird25p_oxygen_umolkg_stbd, seabird25p_salinity, seabird25p_salinity_onboard, seabird25p_temperature, seabird25p_temperature_onboard, seabird25p_time, tailcone_propRpm, tailcone_time, time INFO 2025-10-21 00:21:00,777 process.py align():251 [1] Alignment steps for 2020.210.03 INFO 2025-10-21 00:21:00,811 align.py process_cal():139 [1] Processing i2map_2020.210.03_cal.nc from /data/auv_data/i2map/missionnetcdfs/2020.210.03 INFO 2025-10-21 00:21:00,918 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-10-21 00:21:00,928 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-10-21 00:21:01,188 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-10-21 00:21:01,202 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-10-21 00:21:01,461 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-10-21 00:21:01,475 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-10-21 00:21:01,630 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-10-21 00:21:01,630 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-10-21 00:21:01,740 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-10-21 00:21:01,753 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-10-21 00:21:01,985 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2020.210.03_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 00:21:01,991 align.py process_cal():249 [1] seabird25p_temperature: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 00:21:02,085 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2020.210.03_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 00:21:02,088 align.py process_cal():249 [1] seabird25p_conductivity: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 00:21:02,188 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2020.210.03_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 00:21:02,191 align.py process_cal():249 [1] seabird25p_salinity: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 00:21:02,284 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2020.210.03_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 00:21:02,288 align.py process_cal():249 [1] seabird25p_temperature_onboard: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 00:21:02,382 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2020.210.03_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 00:21:02,386 align.py process_cal():249 [1] seabird25p_conductivity_onboard: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 00:21:02,478 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2020.210.03_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 00:21:02,482 align.py process_cal():249 [1] seabird25p_salinity_onboard: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 00:21:02,576 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2020.210.03_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 00:21:02,579 align.py process_cal():249 [1] seabird25p_dissolvedO2_port: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 00:21:02,672 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2020.210.03_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 00:21:02,675 align.py process_cal():249 [1] seabird25p_oxygen_mll_port: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 00:21:02,768 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2020.210.03_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 00:21:02,771 align.py process_cal():249 [1] seabird25p_oxygen_umolkg_port: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 00:21:02,865 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2020.210.03_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 00:21:02,868 align.py process_cal():249 [1] seabird25p_dissolvedO2_stbd: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 00:21:02,962 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2020.210.03_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 00:21:02,966 align.py process_cal():249 [1] seabird25p_oxygen_mll_stbd: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 00:21:03,060 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2020.210.03_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 00:21:03,063 align.py process_cal():249 [1] seabird25p_oxygen_umolkg_stbd: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 00:21:03,159 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2020.210.03_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 00:21:03,164 align.py process_cal():249 [1] seabird25p_beam_transmittance: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 00:21:03,273 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2020.210.03_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 00:21:03,276 align.py process_cal():249 [1] seabird25p_depth: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 00:21:03,449 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 5.00 INFO 2025-10-21 00:21:03,620 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/i2map/missionnetcdfs/2020.210.03/i2map_2020.210.03_align.nc INFO 2025-10-21 00:21:03,701 align.py write_netcdf():342 [1] Data variables written: navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, seabird25p_beam_transmittance, seabird25p_conductivity, seabird25p_conductivity_onboard, seabird25p_depth, seabird25p_dissolvedO2_port, seabird25p_dissolvedO2_stbd, seabird25p_latitude, seabird25p_longitude, seabird25p_oxygen_mll_port, seabird25p_oxygen_mll_stbd, seabird25p_oxygen_umolkg_port, seabird25p_oxygen_umolkg_stbd, seabird25p_salinity, seabird25p_salinity_onboard, seabird25p_temperature, seabird25p_temperature_onboard, seabird25p_time, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-10-21 00:21:03,703 process.py resample():273 [1] Resampling steps for 2020.210.03 INFO 2025-10-21 00:21:03,703 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-10-21 00:21:03,724 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/i2map/missionnetcdfs/2020.210.03/i2map_2020.210.03_align.nc mission netCDF file INFO 2025-10-21 00:21:03,730 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/i2map/missionnetcdfs/2020.210.03/i2map_2020.210.03_align.nc mission netCDF file INFO 2025-10-21 00:21:03,734 resample.py get_mission_start_end():1145 [1] navigation: 2020-07-28T17:15:10.317159168 to 2020-07-29T16:57:54.889285632 (0 days 00:00:00 before mission_end) INFO 2025-10-21 00:21:03,736 resample.py get_mission_start_end():1145 [1] seabird25p: 2020-07-28T17:14:47.808701184 to 2020-07-28T18:38:06.186288896 (0 days 22:19:48.702996736 before mission_end) WARNING 2025-10-21 00:21:03,737 resample.py get_mission_start_end():1156 [1] Instrument seabird25p has a gap > 5 minutes at the end of the mission: 0 days 22:19:48.702996736 INFO 2025-10-21 00:21:03,739 resample.py get_mission_start_end():1145 [1] tailcone : 2020-07-28T17:14:35.479545856 to 2020-07-29T16:57:54.879286016 (0 days 00:00:00.009999616 before mission_end) INFO 2025-10-21 00:21:03,740 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/i2map/missionnetcdfs/2020.210.03/i2map_2020.210.03_align.nc mission netCDF file INFO 2025-10-21 00:21:03,741 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-10-21 00:21:04,638 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-10-21 00:21:04,759 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-10-21 00:21:04,878 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-10-21 00:21:04,994 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-10-21 00:21:05,026 resample.py resample_variable():1031 [1] Resampling seabird25p_temperature with frequency 1S following 3 point median filter INFO 2025-10-21 00:21:05,026 resample.py resample_variable():1038 [1] Padding seabird25p_temperature with 0 days 22:19:48.702996736 of NaNs to the end of mission INFO 2025-10-21 00:21:05,052 resample.py resample_variable():1031 [1] Resampling seabird25p_conductivity with frequency 1S following 3 point median filter INFO 2025-10-21 00:21:05,053 resample.py resample_variable():1038 [1] Padding seabird25p_conductivity with 0 days 22:19:48.702996736 of NaNs to the end of mission INFO 2025-10-21 00:21:05,076 resample.py resample_variable():1031 [1] Resampling seabird25p_salinity with frequency 1S following 3 point median filter INFO 2025-10-21 00:21:05,076 resample.py resample_variable():1038 [1] Padding seabird25p_salinity with 0 days 22:19:48.702996736 of NaNs to the end of mission INFO 2025-10-21 00:21:05,099 resample.py resample_variable():1031 [1] Resampling seabird25p_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-10-21 00:21:05,099 resample.py resample_variable():1038 [1] Padding seabird25p_temperature_onboard with 0 days 22:19:48.702996736 of NaNs to the end of mission INFO 2025-10-21 00:21:05,122 resample.py resample_variable():1031 [1] Resampling seabird25p_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-10-21 00:21:05,122 resample.py resample_variable():1038 [1] Padding seabird25p_conductivity_onboard with 0 days 22:19:48.702996736 of NaNs to the end of mission INFO 2025-10-21 00:21:05,145 resample.py resample_variable():1031 [1] Resampling seabird25p_salinity_onboard with frequency 1S following 3 point median filter INFO 2025-10-21 00:21:05,145 resample.py resample_variable():1038 [1] Padding seabird25p_salinity_onboard with 0 days 22:19:48.702996736 of NaNs to the end of mission INFO 2025-10-21 00:21:05,167 resample.py resample_variable():1031 [1] Resampling seabird25p_dissolvedO2_port with frequency 1S following 3 point median filter INFO 2025-10-21 00:21:05,167 resample.py resample_variable():1038 [1] Padding seabird25p_dissolvedO2_port with 0 days 22:19:48.702996736 of NaNs to the end of mission INFO 2025-10-21 00:21:05,191 resample.py resample_variable():1031 [1] Resampling seabird25p_oxygen_mll_port with frequency 1S following 3 point median filter INFO 2025-10-21 00:21:05,191 resample.py resample_variable():1038 [1] Padding seabird25p_oxygen_mll_port with 0 days 22:19:48.702996736 of NaNs to the end of mission INFO 2025-10-21 00:21:05,214 resample.py resample_variable():1031 [1] Resampling seabird25p_oxygen_umolkg_port with frequency 1S following 3 point median filter INFO 2025-10-21 00:21:05,214 resample.py resample_variable():1038 [1] Padding seabird25p_oxygen_umolkg_port with 0 days 22:19:48.702996736 of NaNs to the end of mission INFO 2025-10-21 00:21:05,238 resample.py resample_variable():1031 [1] Resampling seabird25p_dissolvedO2_stbd with frequency 1S following 3 point median filter INFO 2025-10-21 00:21:05,238 resample.py resample_variable():1038 [1] Padding seabird25p_dissolvedO2_stbd with 0 days 22:19:48.702996736 of NaNs to the end of mission INFO 2025-10-21 00:21:05,261 resample.py resample_variable():1031 [1] Resampling seabird25p_oxygen_mll_stbd with frequency 1S following 3 point median filter INFO 2025-10-21 00:21:05,261 resample.py resample_variable():1038 [1] Padding seabird25p_oxygen_mll_stbd with 0 days 22:19:48.702996736 of NaNs to the end of mission INFO 2025-10-21 00:21:05,284 resample.py resample_variable():1031 [1] Resampling seabird25p_oxygen_umolkg_stbd with frequency 1S following 3 point median filter INFO 2025-10-21 00:21:05,284 resample.py resample_variable():1038 [1] Padding seabird25p_oxygen_umolkg_stbd with 0 days 22:19:48.702996736 of NaNs to the end of mission INFO 2025-10-21 00:21:05,307 resample.py resample_variable():1031 [1] Resampling seabird25p_beam_transmittance with frequency 1S following 3 point median filter INFO 2025-10-21 00:21:05,307 resample.py resample_variable():1038 [1] Padding seabird25p_beam_transmittance with 0 days 22:19:48.702996736 of NaNs to the end of mission INFO 2025-10-21 00:21:05,424 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-10-21 00:21:05,953 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/i2map/missionnetcdfs/2020.210.03/i2map_2020.210.03_1S.nc INFO 2025-10-21 00:21:05,954 process.py archive():337 [1] Archiving steps for 2020.210.03 INFO 2025-10-21 00:21:05,954 process.py archive():347 [1] nc_file_base = /data/auv_data/i2map/missionnetcdfs/2020.210.03/i2map_2020.210.03, BASE_PATH = /data/auv_data INFO 2025-10-21 00:21:05,956 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/i2map/missionnetcdfs/2020.210.03/i2map_2020.210.03 files to /Volumes/AUVCTD/surveys/2020/netcdf INFO 2025-10-21 00:21:05,957 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2020/netcdf/i2map_2020.210.03_1S.nc INFO 2025-10-21 00:21:05,998 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2020.210.03/i2map_2020.210.03_1S.nc /Volumes/AUVCTD/surveys/2020/netcdf done. INFO 2025-10-21 00:21:05,999 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2020/netcdf/i2map_2020.210.03_cal.nc INFO 2025-10-21 00:21:06,183 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2020.210.03/i2map_2020.210.03_cal.nc /Volumes/AUVCTD/surveys/2020/netcdf done. INFO 2025-10-21 00:21:06,184 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2020/netcdf/i2map_2020.210.03_align.nc INFO 2025-10-21 00:21:06,312 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2020.210.03/i2map_2020.210.03_align.nc /Volumes/AUVCTD/surveys/2020/netcdf done. INFO 2025-10-21 00:21:06,325 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2020.210.03/gps.nc /Volumes/AUVCTD/missionnetcdfs/2020/2020210/2020.210.03 done. INFO 2025-10-21 00:21:06,736 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2020.210.03/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2020/2020210/2020.210.03 done. INFO 2025-10-21 00:21:06,853 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2020.210.03/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2020/2020210/2020.210.03 done. INFO 2025-10-21 00:21:06,872 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2020.210.03/seabird25p.nc /Volumes/AUVCTD/missionnetcdfs/2020/2020210/2020.210.03 done. INFO 2025-10-21 00:21:06,952 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2020.210.03/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2020/2020210/2020.210.03 done. INFO 2025-10-21 00:21:06,952 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-10-21 00:21:06,952 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2020.210.03/i2map_2020.210.03_processing.log /Volumes/AUVCTD/surveys/2020/netcdf