INFO 2025-10-20 23:55:06,627 process.py process_mission():429 [1] commandline = /src/data/process_i2map.py -v --noinput --start_year 2020 --end_year 2020 --start_yd 1 --end_yd 365 --num_cores 1 --clobber INFO 2025-10-20 23:55:06,628 process.py process_mission():449 [1] Processing i2map mission 2020.008.00 by user docker_user on host 9ec966412b78 INFO 2025-10-20 23:55:06,628 process.py download_process():165 [1] Download and processing steps for 2020.008.00 INFO 2025-10-20 23:55:06,628 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/M3/master/i2MAP/2020/01/20200108/2020.008.00 INFO 2025-10-20 23:55:06,629 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/M3/master/i2MAP/2020/01/20200108/2020.008.00 to /data/auv_data/i2map/missionlogs/2020.008.00 INFO 2025-10-20 23:55:08,562 logs2netcdfs.py download_process_logs():779 [1] Processing mission: i2map 2020.008.00 INFO 2025-10-20 23:55:08,562 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/i2map/missionlogs/2020.008.00/gps.log (400964 bytes) INFO 2025-10-20 23:55:08,612 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/i2map/missionlogs/2020.008.00/gps.log: [1977 3004 3005] INFO 2025-10-20 23:55:08,613 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/i2map/missionlogs/2020.008.00/navigation.log (164478564 bytes) INFO 2025-10-20 23:55:20,089 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/i2map/missionlogs/2020.008.00/navigation.log: [ 17921 17922 17923 17924 17925 17926 17927 17928 17929 17930 31582 31583 31584 31585 31586 31587 31588 31589 31590 31591 31592 45293 45294 45295 45296 45297 45298 45299 45300 45301 45302 59019 59020 59021 59022 59023 59024 59025 59026 59027 59028 72005 72006 72007 72008 72009 72010 72011 72012 72013 72014 84826 84827 84828 84829 84830 84831 84832 84833 84834 84835 98397 98398 98399 98400 98401 98402 98403 98404 98405 98406 111978 111979 111980 111981 111982 111983 111984 111985 111986 111987 111988 125579 125580 125581 125582 125583 125584 125585 125586 125587 125588 139030 139031 139032 139033 139034 139035 139036 139037 139038 139039 152496 152497 152498 152499 152500 152501 152502 152503 152504 152505 165497 165498 165499 165500 165501 165502 165503 165504 165505 165506 179218 179219 179220 179221 179222 179223 179224 179225 179226 179227 192884 192885 192886 192887 192888 192889 192890 192891 192892 192893 206440 206441 206442 206443 206444 206445 206446 206447 206448 206449 218147 218148 218149 218150 218151 218152 218153 237517 237518 237519 237520 237521 237522 237523 237524 237525 237526 237527 251484 251485 251486 251487 251488 251489 251490 251491 251492 251493 251494 251495 269864 269865 269866 269867 269868 269869 269870 269871 269872 269873 283365 283366 283367 283368 283369 283370 283371 283372 283373 283374 297571 297572 297573 297574 297575 297576 297577 297578 297579 297580 311232 311233 311234 311235 311236 324848 324849 324850 324851 324852 324853 324854 324855 324856 324857 337744 337745 337746 337747 337748 337749 337750 337751 337752 337753 351205 351206 351207 351208 351209 351210 351211 351212 351213 351214 364851 364852 364853 364854 364855 364856 364857 364858 364859 364860 378597 378598 378599 378600 378601 378602 378603 378604 378605 378606 392243 392244 392245 392246 392247 392248 392249 392250 392251 392252 405884 405885 405886 405887 405888 405889 405890 405891 405892 405893 418785 418786 418787 418788 418789 418790 418791 418792 418793 418794 431826 431827 431828 431829 431830 431831 431832 431833 431834 431835 445527 445528 445529 445530 445531 445532 445533 445534 445535 445536 458988 458989 458990 458991 458992 458993 458994 458995 458996 458997 472479 472480 472481 472482 472483 472484 472485 472486 472487 472488] INFO 2025-10-20 23:55:20,892 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/i2map/missionlogs/2020.008.00/parosci.log (46229030 bytes) INFO 2025-10-20 23:55:24,577 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/i2map/missionlogs/2020.008.00/parosci.log: [ 35918 35919 35920 35921 35922 35923 35924 35925 35926 35927 35928 35929 35930 35931 35932 35933 35934 35935 35936 35937 35938 63109 63110 63111 63112 63113 63114 63115 63116 63117 63118 63119 63120 63121 63122 63123 63124 63125 63126 63127 63128 63129 90398 90399 90400 90401 90402 90403 90404 90405 90406 90407 90408 90409 90410 90411 90412 90413 90414 90415 90416 90417 90418 117717 117718 117719 117720 117721 117722 117723 117724 117725 117726 117727 117728 117729 117730 117731 117732 117733 117734 117735 117736 117737 143565 143566 143567 143568 143569 143570 143571 143572 143573 143574 143575 143576 143577 143578 143579 143580 143581 143582 143583 143584 143585 169084 169085 169086 169087 169088 169089 169090 169091 169092 169093 169094 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940670 940671 940672 940673 940674 940675 940676 940677 940678 940679 940680] INFO 2025-10-20 23:55:24,697 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/i2map/missionlogs/2020.008.00/seabird25p.log (92841610 bytes) INFO 2025-10-20 23:55:31,000 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/i2map/missionlogs/2020.008.00/seabird25p.log: [ 1 28865 28866 28867 28868 28869 28870 28871 28872 28873 28874 28875 28876 28877 28878 28879 28880 28881 50708 50709 50710 50711 50712 50713 50714 50715 50716 50717 50718 50719 50720 50721 50722 50723 50724 72629 72630 72631 72632 72633 72634 72635 72636 72637 72638 72639 72640 72641 72642 72643 72644 72645 94576 94577 94578 94579 94580 94581 94582 94583 94584 94585 94586 94587 94588 94589 94590 94591 94592 115339 115340 115341 115342 115343 115344 115345 115346 115347 115348 115349 115350 115351 115352 115353 115354 115355 135838 135839 135840 135841 135842 135843 135844 135845 135846 135847 135848 135849 135850 135851 135852 135853 135854 157536 157537 157538 157539 157540 157541 157542 157543 157544 157545 157546 157547 157548 157549 157550 157551 157552 179251 179252 179253 179254 179255 179256 179257 179258 179259 179260 179261 179262 179263 179264 179265 179266 179267 200997 200998 200999 201000 201001 201002 201003 201004 201005 201006 201007 201008 201009 201010 201011 201012 201013 222504 222505 222506 222507 222508 222509 222510 222511 222512 222513 222514 222515 222516 222517 222518 222519 222520 244034 244035 244036 244037 244038 244039 244040 244041 244042 244043 244044 244045 244046 244047 244048 244049 244050 264821 264822 264823 264824 264825 264826 264827 264828 264829 264830 264831 264832 264833 264834 264835 264836 264837 286759 286760 286761 286762 286763 286764 286765 286766 286767 286768 286769 286770 286771 286772 286773 286774 286775 308610 308611 308612 308613 308614 308615 308616 308617 308618 308619 308620 308621 308622 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712561 712562 712563 712564 712565 712566 712567 712568 712569 712570 712571 712572 734079 734080 734081 734082 734083 734084 734085 734086 734087 734088 734089 734090 734091 734092 734093 734094 734095 755649 755650 755651 755652 755653 755654 755655 755656 755657 755658 755659 755660 755661 755662 755663 755664 755665] INFO 2025-10-20 23:55:31,321 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/i2map/missionlogs/2020.008.00/tailCone.log (23228059 bytes) INFO 2025-10-20 23:55:34,120 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/i2map/missionlogs/2020.008.00/tailCone.log: [ 18086 18087 18088 18089 18090 18091 18092 18093 18094 18095 31746 31747 31748 31749 31750 31751 31752 31753 31754 31755 31756 45457 45458 45459 45460 45461 45462 45463 45464 45465 45466 59183 59184 59185 59186 59187 59188 59189 59190 59191 59192 72169 72170 72171 72172 72173 72174 72175 72176 72177 72178 84990 84991 84992 84993 84994 84995 84996 84997 84998 84999 98559 98560 98561 98562 98563 98564 98565 98566 98567 98568 112140 112141 112142 112143 112144 112145 112146 112147 112148 112149 112150 125741 125742 125743 125744 125745 125746 125747 125748 125749 125750 139192 139193 139194 139195 139196 139197 139198 139199 139200 139201 152658 152659 152660 152661 152662 152663 152664 152665 152666 152667 165659 165660 165661 165662 165663 165664 165665 165666 165667 165668 179379 179380 179381 179382 179383 179384 179385 179386 179387 179388 193044 193045 193046 193047 193048 193049 193050 193051 193052 193053 206601 206602 206603 206604 206605 206606 206607 206608 206609 206610 218308 218309 218310 218311 218312 218313 218314 237677 237678 237679 237680 237681 237682 237683 237684 237685 237686 237687 251644 251645 251646 251647 251648 251649 251650 251651 251652 251653 251654 251655 270023 270024 270025 270026 270027 270028 270029 270030 270031 270032 283524 283525 283526 283527 283528 283529 283530 283531 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logs2netcdfs.py download_process_logs():807 [1] Time to process: 25.60 seconds INFO 2025-10-20 23:55:34,164 process.py calibrate():227 [1] Calibration steps for 2020.008.00 INFO 2025-10-20 23:56:51,079 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-10-20 23:56:51,082 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-10-20 23:56:51,825 calibrate.py _nudge_pos():1806 [1] 101: 0.150 0.0043530 -0.0587560 68253 227.63 2.843 -47.830 2020-01-08T21:19:31.279205376 INFO 2025-10-20 23:56:54,865 calibrate.py _nudge_pos():1806 [1] 392: 0.050 0.0034966 0.0008554 10546 35.18 14.774 4.506 2020-01-08T21:59:32.502617088 INFO 2025-10-20 23:56:57,634 calibrate.py _nudge_pos():1806 [1] 656: 0.140 0.0011070 0.0013372 10575 35.28 4.663 7.024 2020-01-08T22:39:12.315234560 INFO 2025-10-20 23:56:57,941 calibrate.py _nudge_pos():1806 [1] 685: 0.040 -0.0010998 -0.0007912 6930 23.13 -7.065 -6.340 2020-01-08T23:02:49.324084736 INFO 2025-10-20 23:56:58,102 calibrate.py _nudge_pos():1806 [1] 700: 0.070 -0.0000086 0.0000109 75 0.25 -5.201 8.219 2020-01-08T23:03:18.322098176 INFO 2025-10-20 23:56:59,136 calibrate.py _nudge_pos():1806 [1] 795: 0.010 -0.0158289 -0.0798891 111573 372.15 -6.326 -39.778 2020-01-09T05:17:01.356196096 INFO 2025-10-20 23:57:03,026 calibrate.py _nudge_pos():1806 [1] 1149: 0.090 -0.0000059 -0.0000219 20 0.06 -13.891 -63.992 2020-01-09T05:22:58.351740160 INFO 2025-10-20 23:57:11,361 calibrate.py _nudge_pos():1806 [1] 1909: 0.050 -0.0002161 -0.0001879 371 1.23 -26.064 -28.224 2020-01-09T05:36:51.554661632 INFO 2025-10-20 23:57:15,202 calibrate.py _nudge_pos():1806 [1] 2256: 0.090 0.0037520 -0.0022540 6846 22.82 24.453 -18.303 2020-01-09T06:05:26.317917952 INFO 2025-10-20 23:57:18,402 calibrate.py _nudge_pos():1806 [1] 2544: 0.050 0.0086152 0.0000063 10570 35.26 36.324 0.033 2020-01-09T06:45:29.308333056 INFO 2025-10-20 23:57:21,408 calibrate.py _nudge_pos():1806 [1] 2814: 0.080 0.0075564 -0.0009823 10791 35.97 31.228 -5.061 2020-01-09T07:25:56.512058368 INFO 2025-10-20 23:57:24,320 calibrate.py _nudge_pos():1806 [1] 3072: 0.150 -0.0041014 -0.0067058 16486 54.95 -11.092 -22.612 2020-01-09T08:25:10.445626624 INFO 2025-10-20 23:57:27,386 calibrate.py _nudge_pos():1806 [1] 3336: 0.160 0.0070214 -0.0072061 14137 47.18 22.115 -28.302 2020-01-09T09:16:44.254776320 INFO 2025-10-20 23:57:27,557 calibrate.py _nudge_pos():1806 [1] 3351: 0.150 0.0000017 0.0000072 15 0.05 5.550 28.521 2020-01-09T09:17:01.253611776 INFO 2025-10-20 23:57:27,592 calibrate.py _nudge_pos():1806 [1] 3354: 0.130 -0.0002213 -0.0003807 1330 4.43 -7.424 -15.926 2020-01-09T09:21:29.255252480 INFO 2025-10-20 23:57:27,914 calibrate.py _nudge_pos():1806 [1] 3382: 0.110 0.0001377 -0.0001783 275 0.91 22.400 -36.163 2020-01-09T09:22:51.259634688 INFO 2025-10-20 23:57:30,993 calibrate.py _nudge_pos():1806 [1] 3653: 0.090 0.0002153 0.0012314 9520 31.73 1.008 7.192 2020-01-09T09:59:06.460623360 INFO 2025-10-20 23:57:31,852 calibrate.py _nudge_pos():1806 [1] 3728: 0.170 0.0001061 -0.0000759 1175 3.94 3.996 -3.568 2020-01-09T10:04:17.263953408 INFO 2025-10-20 23:57:32,038 calibrate.py _nudge_pos():1806 [1] 3744: 0.100 0.0000022 0.0000343 11 0.03 9.631 190.820 2020-01-09T10:04:34.262789120 INFO 2025-10-20 23:57:34,771 calibrate.py _nudge_pos():1806 [1] 3983: 0.040 -0.0002605 -0.0015285 3051 10.17 -3.807 -27.859 2020-01-09T10:18:42.464683264 INFO 2025-10-20 23:57:39,802 calibrate.py _nudge_pos():1806 [1] 4413: 0.080 -0.0000572 -0.0007231 1466 4.88 -1.740 -27.440 2020-01-09T10:30:45.465154048 INFO 2025-10-20 23:57:39,838 calibrate.py _nudge_pos():1806 [1] 4416: 0.040 -0.0001021 0.0002802 1815 6.05 -2.508 8.587 2020-01-09T10:36:50.460150528 INFO 2025-10-20 23:57:42,824 calibrate.py _nudge_pos():1806 [1] 4671: 0.190 0.0015722 -0.0013594 2259 7.54 30.980 -33.408 2020-01-09T10:48:37.068899072 INFO 2025-10-20 23:57:45,230 calibrate.py _nudge_pos():1806 [1] 4873: 0.180 0.0000248 -0.0000202 35 0.11 32.499 -32.901 2020-01-09T10:52:05.274636032 INFO 2025-10-20 23:57:45,684 calibrate.py _nudge_pos():1806 [1] 4912: 0.140 0.0010623 -0.0022147 2505 8.35 18.911 -49.167 2020-01-09T11:01:04.267712512 INFO 2025-10-20 23:57:49,375 calibrate.py _nudge_pos():1806 [1] 5224: 0.020 0.0010036 -0.0019292 2780 9.26 16.097 -38.591 2020-01-09T11:15:31.468305408 INFO 2025-10-20 23:57:49,537 calibrate.py _nudge_pos():1806 [1] 5238: 0.010 0.0000029 0.0000059 60 0.20 2.168 5.550 2020-01-09T11:15:56.466592768 INFO 2025-10-20 23:57:50,373 calibrate.py _nudge_pos():1806 [1] 5306: 0.070 0.0011976 -0.0018296 2985 9.95 17.890 -34.084 2020-01-09T11:27:00.471105280 INFO 2025-10-20 23:57:52,074 calibrate.py _nudge_pos():1806 [1] 5442: 0.140 0.0000215 0.0000356 35 0.11 28.168 58.282 2020-01-09T11:29:22.471377664 INFO 2025-10-20 23:57:53,417 calibrate.py _nudge_pos():1862 [1] 5517: - - - 159482 531.96 - - INFO 2025-10-20 23:57:53,417 calibrate.py _nudge_pos():1868 [1] Points in final series = 483115 INFO 2025-10-20 23:58:52,966 calibrate.py _read_oxy_coeffs():1189 [1] Looking for calibration file for O2 sensor serial number 2935 on port side INFO 2025-10-20 23:58:52,971 calibrate.py _read_oxy_coeffs():1219 [1] Executing: find "/Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files" -name "2935" INFO 2025-10-20 23:58:53,995 calibrate.py _read_oxy_coeffs():1238 [1] Found calibration date dirs: 2014_Nov 2021_Mar 2022_Apr WARNING 2025-10-20 23:58:54,000 calibrate.py _cal_date_xml_files():1081 [1] Found 4 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/2935/2014_Nov INFO 2025-10-20 23:58:54,000 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-20 23:58:54,007 calibrate.py _cal_date_xml_files():1081 [1] Found 4 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/2935/2021_Mar INFO 2025-10-20 23:58:54,007 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-20 23:58:54,011 calibrate.py _cal_date_xml_files():1081 [1] Found 4 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/2935/2022_Apr INFO 2025-10-20 23:58:54,012 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} INFO 2025-10-20 23:58:54,018 calibrate.py _read_oxy_coeffs():1247 [1] File /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/2935/2022_Apr/Oxygen_SBE43_2935.xml has CalibrationDate 2022-03-22 00:00:00+00:00 INFO 2025-10-20 23:58:54,019 calibrate.py _read_oxy_coeffs():1253 [1] Breaking from loop as /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/2935/2022_Apr/Oxygen_SBE43_2935.xml is after 2020.008.00 with mission_start=2020-01-08T17:30:25.721699840 INFO 2025-10-20 23:58:54,019 calibrate.py _read_oxy_coeffs():1270 [1] File /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/2935/2022_Apr/Oxygen_SBE43_2935.xml is the first calibration file, but is after 2020.008.00 with mission_start=2020-01-08T17:30:25.721699840 INFO 2025-10-20 23:59:07,884 calibrate.py _calibrated_oxygen():2513 [1] dissolvedO2_port: parsed from /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/2935/2022_Apr/Oxygen_SBE43_2935.xml file: {'Soc': 0.42595, 'offset': -0.5339, 'A': -0.0041113, 'B': 0.00020802, 'C': -3.0027e-06, 'D0': 2.5826, 'D1': 0.000192634, 'D2': -0.0464803, 'E': 0.036, 'Tau20': 1.09, 'H1': -0.033, 'H2': 5000.0, 'H3': 1450.0} INFO 2025-10-20 23:59:07,894 calibrate.py _read_oxy_coeffs():1189 [1] Looking for calibration file for O2 sensor serial number 3488 on stbd side INFO 2025-10-20 23:59:07,894 calibrate.py _read_oxy_coeffs():1219 [1] Executing: find "/Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files" -name "3488" INFO 2025-10-20 23:59:08,024 calibrate.py _read_oxy_coeffs():1238 [1] Found calibration date dirs: 2016_dec 2021_mar 2022_Jan WARNING 2025-10-20 23:59:08,028 calibrate.py _cal_date_xml_files():1081 [1] Found 4 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/3488/2016_dec INFO 2025-10-20 23:59:08,028 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-20 23:59:08,033 calibrate.py _cal_date_xml_files():1081 [1] Found 4 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/3488/2021_mar INFO 2025-10-20 23:59:08,034 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-20 23:59:08,038 calibrate.py _cal_date_xml_files():1081 [1] Found 4 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/3488/2022_Jan INFO 2025-10-20 23:59:08,039 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} INFO 2025-10-20 23:59:08,044 calibrate.py _read_oxy_coeffs():1247 [1] File /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/3488/2016_dec/43-3488.xml has CalibrationDate 2016-12-16 00:00:00+00:00 INFO 2025-10-20 23:59:08,045 calibrate.py _read_oxy_coeffs():1263 [1] File /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/3488/2016_dec/43-3488.xml is just before 2020.008.00 with mission_start=2020-01-08T17:30:25.721699840 INFO 2025-10-20 23:59:21,922 calibrate.py _calibrated_oxygen():2513 [1] dissolvedO2_stbd: parsed from /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/3488/2016_dec/43-3488.xml file: {'Soc': 0.44664, 'offset': -0.507, 'A': -0.0030812, 'B': 7.8442e-05, 'C': -9.0601e-07, 'D0': 2.5826, 'D1': 0.000192634, 'D2': -0.0464803, 'E': 0.036, 'Tau20': 1.44, 'H1': -0.033, 'H2': 5000.0, 'H3': 1450.0} INFO 2025-10-20 23:59:40,857 calibrate.py _geometric_depth_correction():3423 [1] seabird25p: d_beg_time_diff: -2 seconds, d_end_time_diff: 0 seconds INFO 2025-10-20 23:59:46,312 calibrate.py _geometric_depth_correction():3423 [1] seabird25p: d_beg_time_diff: -2 seconds, d_end_time_diff: 0 seconds INFO 2025-10-20 23:59:46,322 calibrate.py _ctd_process():2919 [1] Performing range checking of ['seabird25p_salinity'] in 2020.008.00/seabird25p.nc WARNING 2025-10-20 23:59:46,325 calibrate.py _range_qc_combined_nc():890 [1] More than 500 (760) seabird25p_salinity values found outside of range. This may indicate a problem with the seabird25p data. INFO 2025-10-20 23:59:46,325 calibrate.py _range_qc_combined_nc():898 [1] Setting 760 seabird25p_salinity values to NaN INFO 2025-10-20 23:59:46,326 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('seabird25p_salinity', Range(min=30, max=40))] INFO 2025-10-20 23:59:46,326 calibrate.py _range_qc_combined_nc():936 [1] Done range checking seabird25p INFO 2025-10-20 23:59:55,316 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/i2map/missionnetcdfs/2020.008.00/i2map_2020.008.00_cal.nc INFO 2025-10-21 00:00:50,974 calibrate.py write_netcdf():3512 [1] Data variables written: depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, seabird25p_beam_transmittance, seabird25p_conductivity, seabird25p_conductivity_onboard, seabird25p_depth, seabird25p_dissolvedO2_port, seabird25p_dissolvedO2_stbd, seabird25p_oxygen_mll_port, seabird25p_oxygen_mll_stbd, seabird25p_oxygen_umolkg_port, seabird25p_oxygen_umolkg_stbd, seabird25p_salinity, seabird25p_salinity_onboard, seabird25p_temperature, seabird25p_temperature_onboard, seabird25p_time, tailcone_propRpm, tailcone_time, time INFO 2025-10-21 00:00:50,978 process.py align():251 [1] Alignment steps for 2020.008.00 INFO 2025-10-21 00:00:51,030 align.py process_cal():139 [1] Processing i2map_2020.008.00_cal.nc from /data/auv_data/i2map/missionnetcdfs/2020.008.00 INFO 2025-10-21 00:00:51,175 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-10-21 00:00:51,192 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-10-21 00:00:51,533 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-10-21 00:00:51,556 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-10-21 00:00:51,872 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-10-21 00:00:51,895 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-10-21 00:00:52,083 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-10-21 00:00:52,083 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-10-21 00:00:52,220 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-10-21 00:00:52,241 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-10-21 00:00:52,572 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2020.008.00_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 00:00:52,601 align.py process_cal():249 [1] seabird25p_temperature: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 00:00:53,075 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2020.008.00_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 00:00:53,109 align.py process_cal():249 [1] seabird25p_conductivity: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 00:00:53,550 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2020.008.00_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 00:00:53,582 align.py process_cal():249 [1] seabird25p_salinity: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 00:00:54,039 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2020.008.00_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 00:00:54,072 align.py process_cal():249 [1] seabird25p_temperature_onboard: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 00:00:54,515 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2020.008.00_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 00:00:54,544 align.py process_cal():249 [1] seabird25p_conductivity_onboard: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 00:00:54,976 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2020.008.00_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 00:00:55,005 align.py process_cal():249 [1] seabird25p_salinity_onboard: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 00:00:55,529 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2020.008.00_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 00:00:55,557 align.py process_cal():249 [1] seabird25p_dissolvedO2_port: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 00:00:55,982 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2020.008.00_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 00:00:56,011 align.py process_cal():249 [1] seabird25p_oxygen_mll_port: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 00:00:56,434 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2020.008.00_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 00:00:56,462 align.py process_cal():249 [1] seabird25p_oxygen_umolkg_port: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 00:00:56,885 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2020.008.00_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 00:00:56,919 align.py process_cal():249 [1] seabird25p_dissolvedO2_stbd: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 00:00:57,337 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2020.008.00_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 00:00:57,364 align.py process_cal():249 [1] seabird25p_oxygen_mll_stbd: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 00:00:57,792 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2020.008.00_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 00:00:57,820 align.py process_cal():249 [1] seabird25p_oxygen_umolkg_stbd: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 00:00:58,240 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2020.008.00_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 00:00:58,267 align.py process_cal():249 [1] seabird25p_beam_transmittance: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 00:00:58,685 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2020.008.00_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-21 00:00:58,710 align.py process_cal():249 [1] seabird25p_depth: instrument_sample_rate_hz = 7.99 INFO 2025-10-21 00:00:59,175 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 5.00 INFO 2025-10-21 00:00:59,365 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/i2map/missionnetcdfs/2020.008.00/i2map_2020.008.00_align.nc INFO 2025-10-21 00:00:59,537 align.py write_netcdf():342 [1] Data variables written: navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, seabird25p_beam_transmittance, seabird25p_conductivity, seabird25p_conductivity_onboard, seabird25p_depth, seabird25p_dissolvedO2_port, seabird25p_dissolvedO2_stbd, seabird25p_latitude, seabird25p_longitude, seabird25p_oxygen_mll_port, seabird25p_oxygen_mll_stbd, seabird25p_oxygen_umolkg_port, seabird25p_oxygen_umolkg_stbd, seabird25p_salinity, seabird25p_salinity_onboard, seabird25p_temperature, seabird25p_temperature_onboard, seabird25p_time, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-10-21 00:00:59,540 process.py resample():273 [1] Resampling steps for 2020.008.00 INFO 2025-10-21 00:00:59,540 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-10-21 00:00:59,568 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/i2map/missionnetcdfs/2020.008.00/i2map_2020.008.00_align.nc mission netCDF file INFO 2025-10-21 00:00:59,578 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/i2map/missionnetcdfs/2020.008.00/i2map_2020.008.00_align.nc mission netCDF file INFO 2025-10-21 00:00:59,582 resample.py get_mission_start_end():1145 [1] navigation: 2020-01-08T17:30:52.089893376 to 2020-01-09T20:23:15.496036096 (0 days 00:00:00.069995008 before mission_end) INFO 2025-10-21 00:00:59,588 resample.py get_mission_start_end():1145 [1] seabird25p: 2020-01-08T17:30:25.721699840 to 2020-01-09T20:23:15.536033280 (0 days 00:00:00.029997824 before mission_end) INFO 2025-10-21 00:00:59,593 resample.py get_mission_start_end():1145 [1] tailcone : 2020-01-08T17:30:17.932233216 to 2020-01-09T20:23:15.566031104 (0 days 00:00:00 before mission_end) INFO 2025-10-21 00:00:59,595 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/i2map/missionnetcdfs/2020.008.00/i2map_2020.008.00_align.nc mission netCDF file INFO 2025-10-21 00:00:59,595 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-10-21 00:01:00,882 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-10-21 00:01:01,033 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-10-21 00:01:01,182 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-10-21 00:01:01,323 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-10-21 00:01:01,538 resample.py resample_variable():1031 [1] Resampling seabird25p_temperature with frequency 1S following 3 point median filter INFO 2025-10-21 00:01:01,760 resample.py resample_variable():1031 [1] Resampling seabird25p_conductivity with frequency 1S following 3 point median filter INFO 2025-10-21 00:01:02,003 resample.py resample_variable():1031 [1] Resampling seabird25p_salinity with frequency 1S following 3 point median filter INFO 2025-10-21 00:01:02,233 resample.py resample_variable():1031 [1] Resampling seabird25p_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-10-21 00:01:02,471 resample.py resample_variable():1031 [1] Resampling seabird25p_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-10-21 00:01:02,714 resample.py resample_variable():1031 [1] Resampling seabird25p_salinity_onboard with frequency 1S following 3 point median filter INFO 2025-10-21 00:01:02,956 resample.py resample_variable():1031 [1] Resampling seabird25p_dissolvedO2_port with frequency 1S following 3 point median filter INFO 2025-10-21 00:01:03,229 resample.py resample_variable():1031 [1] Resampling seabird25p_oxygen_mll_port with frequency 1S following 3 point median filter INFO 2025-10-21 00:01:03,485 resample.py resample_variable():1031 [1] Resampling seabird25p_oxygen_umolkg_port with frequency 1S following 3 point median filter INFO 2025-10-21 00:01:03,752 resample.py resample_variable():1031 [1] Resampling seabird25p_dissolvedO2_stbd with frequency 1S following 3 point median filter INFO 2025-10-21 00:01:04,007 resample.py resample_variable():1031 [1] Resampling seabird25p_oxygen_mll_stbd with frequency 1S following 3 point median filter INFO 2025-10-21 00:01:04,262 resample.py resample_variable():1031 [1] Resampling seabird25p_oxygen_umolkg_stbd with frequency 1S following 3 point median filter INFO 2025-10-21 00:01:04,521 resample.py resample_variable():1031 [1] Resampling seabird25p_beam_transmittance with frequency 1S following 3 point median filter INFO 2025-10-21 00:01:04,682 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-10-21 00:01:05,294 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/i2map/missionnetcdfs/2020.008.00/i2map_2020.008.00_1S.nc INFO 2025-10-21 00:01:05,297 process.py archive():337 [1] Archiving steps for 2020.008.00 INFO 2025-10-21 00:01:05,298 process.py archive():347 [1] nc_file_base = /data/auv_data/i2map/missionnetcdfs/2020.008.00/i2map_2020.008.00, BASE_PATH = /data/auv_data INFO 2025-10-21 00:01:05,301 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/i2map/missionnetcdfs/2020.008.00/i2map_2020.008.00 files to /Volumes/AUVCTD/surveys/2020/netcdf INFO 2025-10-21 00:01:05,307 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2020/netcdf/i2map_2020.008.00_1S.nc INFO 2025-10-21 00:01:05,361 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2020.008.00/i2map_2020.008.00_1S.nc /Volumes/AUVCTD/surveys/2020/netcdf done. INFO 2025-10-21 00:01:05,362 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2020/netcdf/i2map_2020.008.00_cal.nc INFO 2025-10-21 00:01:05,766 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2020.008.00/i2map_2020.008.00_cal.nc /Volumes/AUVCTD/surveys/2020/netcdf done. INFO 2025-10-21 00:01:05,767 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2020/netcdf/i2map_2020.008.00_align.nc INFO 2025-10-21 00:01:06,102 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2020.008.00/i2map_2020.008.00_align.nc /Volumes/AUVCTD/surveys/2020/netcdf done. INFO 2025-10-21 00:01:06,117 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2020.008.00/gps.nc /Volumes/AUVCTD/missionnetcdfs/2020/2020008/2020.008.00 done. INFO 2025-10-21 00:01:06,498 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2020.008.00/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2020/2020008/2020.008.00 done. INFO 2025-10-21 00:01:06,628 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2020.008.00/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2020/2020008/2020.008.00 done. INFO 2025-10-21 00:01:06,859 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2020.008.00/seabird25p.nc /Volumes/AUVCTD/missionnetcdfs/2020/2020008/2020.008.00 done. INFO 2025-10-21 00:01:06,945 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2020.008.00/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2020/2020008/2020.008.00 done. INFO 2025-10-21 00:01:06,945 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-10-21 00:01:06,945 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2020.008.00/i2map_2020.008.00_processing.log /Volumes/AUVCTD/surveys/2020/netcdf