INFO 2025-10-20 23:02:01,307 process.py process_mission():429 [1] commandline = /src/data/process_i2map.py -v --noinput --start_year 2019 --end_year 2019 --start_yd 1 --end_yd 365 --num_cores 1 --clobber INFO 2025-10-20 23:02:01,308 process.py process_mission():449 [1] Processing i2map mission 2019.123.04 by user docker_user on host bc943cff5f21 INFO 2025-10-20 23:02:01,308 process.py download_process():165 [1] Download and processing steps for 2019.123.04 INFO 2025-10-20 23:02:01,308 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/M3/master/i2MAP/2019/05/20190503/20190503/2019.123.04 INFO 2025-10-20 23:02:01,309 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/M3/master/i2MAP/2019/05/20190503/20190503/2019.123.04 to /data/auv_data/i2map/missionlogs/2019.123.04 INFO 2025-10-20 23:02:01,539 logs2netcdfs.py download_process_logs():779 [1] Processing mission: i2map 2019.123.04 INFO 2025-10-20 23:02:01,540 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/i2map/missionlogs/2019.123.04/gps.log (8780 bytes) INFO 2025-10-20 23:02:01,555 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/i2map/missionlogs/2019.123.04/navigation.log (7728364 bytes) INFO 2025-10-20 23:02:02,413 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/i2map/missionlogs/2019.123.04/navigation.log: [ 8710 8711 8712 8713 8714 8715 8716 8717 8718 8719 8720 22391 22392 22393 22394 22395 22396 22397 22398 22399 22400] INFO 2025-10-20 23:02:02,458 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/i2map/missionlogs/2019.123.04/parosci.log (2188118 bytes) INFO 2025-10-20 23:02:02,671 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/i2map/missionlogs/2019.123.04/parosci.log: [17689 17690 17691 17692 17693 17694 17695 17696 17697 17698 17699 17700 17701 17702 17703 17704 17705 17706 17707 17708 17709 44920 44921 44922 44923 44924 44925 44926 44927 44928 44929 44930 44931 44932 44933 44934 44935 44936 44937 44938 44939 44940] INFO 2025-10-20 23:02:02,678 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/i2map/missionlogs/2019.123.04/seabird25p.log (4386250 bytes) INFO 2025-10-20 23:02:02,986 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/i2map/missionlogs/2019.123.04/seabird25p.log: [ 1 14142 14143 14144 14145 14146 14147 14148 14149 14150 14151 14152 14153 14154 14155 14156 14157 14158 36016 36017 36018 36019 36020 36021 36022 36023 36024 36025 36026 36027 36028 36029 36030 36031 36032] INFO 2025-10-20 23:02:03,004 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/i2map/missionlogs/2019.123.04/tailCone.log (1099915 bytes) INFO 2025-10-20 23:02:03,139 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/i2map/missionlogs/2019.123.04/tailCone.log: [ 8892 8893 8894 8895 8896 8897 8898 8899 8900 8901 22573 22574 22575 22576 22577 22578 22579 22580 22581 22582] INFO 2025-10-20 23:02:03,142 logs2netcdfs.py download_process_logs():807 [1] Time to process: 1.60 seconds INFO 2025-10-20 23:02:03,143 process.py calibrate():227 [1] Calibration steps for 2019.123.04 INFO 2025-10-20 23:02:06,829 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-10-20 23:02:06,831 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-10-20 23:02:07,437 calibrate.py _nudge_pos():1806 [1] 94: 0.150 -0.0043757 -0.0001328 22350 74.56 -8.719 -0.330 2019-05-03T18:38:30.287034624 INFO 2025-10-20 23:02:07,590 calibrate.py _nudge_pos():1862 [1] 72: - - - 4 0.01 - - INFO 2025-10-20 23:02:07,590 calibrate.py _nudge_pos():1868 [1] Points in final series = 22701 INFO 2025-10-20 23:02:10,485 calibrate.py _read_oxy_coeffs():1189 [1] Looking for calibration file for O2 sensor serial number 2935 on port side INFO 2025-10-20 23:02:10,485 calibrate.py _read_oxy_coeffs():1219 [1] Executing: find "/Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files" -name "2935" INFO 2025-10-20 23:02:10,633 calibrate.py _read_oxy_coeffs():1238 [1] Found calibration date dirs: 2014_Nov 2021_Mar 2022_Apr WARNING 2025-10-20 23:02:10,637 calibrate.py _cal_date_xml_files():1081 [1] Found 4 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/2935/2014_Nov INFO 2025-10-20 23:02:10,637 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-20 23:02:10,642 calibrate.py _cal_date_xml_files():1081 [1] Found 4 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/2935/2021_Mar INFO 2025-10-20 23:02:10,642 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-20 23:02:10,647 calibrate.py _cal_date_xml_files():1081 [1] Found 4 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/2935/2022_Apr INFO 2025-10-20 23:02:10,647 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} INFO 2025-10-20 23:02:10,653 calibrate.py _read_oxy_coeffs():1247 [1] File /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/2935/2022_Apr/Oxygen_SBE43_2935.xml has CalibrationDate 2022-03-22 00:00:00+00:00 INFO 2025-10-20 23:02:10,653 calibrate.py _read_oxy_coeffs():1253 [1] Breaking from loop as /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/2935/2022_Apr/Oxygen_SBE43_2935.xml is after 2019.123.04 with mission_start=2019-05-03T17:22:35.464502272 INFO 2025-10-20 23:02:10,653 calibrate.py _read_oxy_coeffs():1270 [1] File /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/2935/2022_Apr/Oxygen_SBE43_2935.xml is the first calibration file, but is after 2019.123.04 with mission_start=2019-05-03T17:22:35.464502272 INFO 2025-10-20 23:02:11,315 calibrate.py _calibrated_oxygen():2513 [1] dissolvedO2_port: parsed from /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/2935/2022_Apr/Oxygen_SBE43_2935.xml file: {'Soc': 0.42595, 'offset': -0.5339, 'A': -0.0041113, 'B': 0.00020802, 'C': -3.0027e-06, 'D0': 2.5826, 'D1': 0.000192634, 'D2': -0.0464803, 'E': 0.036, 'Tau20': 1.09, 'H1': -0.033, 'H2': 5000.0, 'H3': 1450.0} INFO 2025-10-20 23:02:11,319 calibrate.py _read_oxy_coeffs():1189 [1] Looking for calibration file for O2 sensor serial number 3488 on stbd side INFO 2025-10-20 23:02:11,319 calibrate.py _read_oxy_coeffs():1219 [1] Executing: find "/Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files" -name "3488" INFO 2025-10-20 23:02:11,466 calibrate.py _read_oxy_coeffs():1238 [1] Found calibration date dirs: 2016_dec 2021_mar 2022_Jan WARNING 2025-10-20 23:02:11,470 calibrate.py _cal_date_xml_files():1081 [1] Found 4 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/3488/2016_dec INFO 2025-10-20 23:02:11,470 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-20 23:02:11,475 calibrate.py _cal_date_xml_files():1081 [1] Found 4 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/3488/2021_mar INFO 2025-10-20 23:02:11,475 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-20 23:02:11,480 calibrate.py _cal_date_xml_files():1081 [1] Found 4 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/3488/2022_Jan INFO 2025-10-20 23:02:11,480 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} INFO 2025-10-20 23:02:11,486 calibrate.py _read_oxy_coeffs():1247 [1] File /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/3488/2016_dec/43-3488.xml has CalibrationDate 2016-12-16 00:00:00+00:00 INFO 2025-10-20 23:02:11,486 calibrate.py _read_oxy_coeffs():1263 [1] File /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/3488/2016_dec/43-3488.xml is just before 2019.123.04 with mission_start=2019-05-03T17:22:35.464502272 INFO 2025-10-20 23:02:12,147 calibrate.py _calibrated_oxygen():2513 [1] dissolvedO2_stbd: parsed from /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/3488/2016_dec/43-3488.xml file: {'Soc': 0.44664, 'offset': -0.507, 'A': -0.0030812, 'B': 7.8442e-05, 'C': -9.0601e-07, 'D0': 2.5826, 'D1': 0.000192634, 'D2': -0.0464803, 'E': 0.036, 'Tau20': 1.44, 'H1': -0.033, 'H2': 5000.0, 'H3': 1450.0} INFO 2025-10-20 23:02:13,046 calibrate.py _geometric_depth_correction():3423 [1] seabird25p: d_beg_time_diff: 8 seconds, d_end_time_diff: -1 seconds INFO 2025-10-20 23:02:13,415 calibrate.py _geometric_depth_correction():3423 [1] seabird25p: d_beg_time_diff: 8 seconds, d_end_time_diff: -1 seconds INFO 2025-10-20 23:02:13,417 calibrate.py _ctd_process():2919 [1] Performing range checking of ['seabird25p_salinity'] in 2019.123.04/seabird25p.nc INFO 2025-10-20 23:02:13,418 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 seabird25p_salinity values to NaN INFO 2025-10-20 23:02:13,419 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('seabird25p_salinity', Range(min=30, max=40))] INFO 2025-10-20 23:02:13,419 calibrate.py _range_qc_combined_nc():936 [1] Done range checking seabird25p INFO 2025-10-20 23:02:13,915 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/i2map/missionnetcdfs/2019.123.04/i2map_2019.123.04_cal.nc INFO 2025-10-20 23:02:16,753 calibrate.py write_netcdf():3512 [1] Data variables written: depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, seabird25p_beam_transmittance, seabird25p_conductivity, seabird25p_conductivity_onboard, seabird25p_depth, seabird25p_dissolvedO2_port, seabird25p_dissolvedO2_stbd, seabird25p_oxygen_mll_port, seabird25p_oxygen_mll_stbd, seabird25p_oxygen_umolkg_port, seabird25p_oxygen_umolkg_stbd, seabird25p_salinity, seabird25p_salinity_onboard, seabird25p_temperature, seabird25p_temperature_onboard, seabird25p_time, tailcone_propRpm, tailcone_time, time INFO 2025-10-20 23:02:16,756 process.py align():251 [1] Alignment steps for 2019.123.04 INFO 2025-10-20 23:02:16,777 align.py process_cal():139 [1] Processing i2map_2019.123.04_cal.nc from /data/auv_data/i2map/missionnetcdfs/2019.123.04 INFO 2025-10-20 23:02:16,787 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-10-20 23:02:16,789 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-10-20 23:02:16,819 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-10-20 23:02:16,822 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-10-20 23:02:16,845 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-10-20 23:02:16,847 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-10-20 23:02:16,860 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-10-20 23:02:16,860 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-10-20 23:02:16,869 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-10-20 23:02:16,871 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-10-20 23:02:16,894 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2019.123.04_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-20 23:02:16,897 align.py process_cal():249 [1] seabird25p_temperature: instrument_sample_rate_hz = 7.99 INFO 2025-10-20 23:02:16,926 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2019.123.04_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-20 23:02:16,929 align.py process_cal():249 [1] seabird25p_conductivity: instrument_sample_rate_hz = 7.99 INFO 2025-10-20 23:02:16,958 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2019.123.04_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-20 23:02:16,961 align.py process_cal():249 [1] seabird25p_salinity: instrument_sample_rate_hz = 7.99 INFO 2025-10-20 23:02:16,989 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2019.123.04_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-20 23:02:16,992 align.py process_cal():249 [1] seabird25p_temperature_onboard: instrument_sample_rate_hz = 7.99 INFO 2025-10-20 23:02:17,020 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2019.123.04_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-20 23:02:17,022 align.py process_cal():249 [1] seabird25p_conductivity_onboard: instrument_sample_rate_hz = 7.99 INFO 2025-10-20 23:02:17,050 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2019.123.04_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-20 23:02:17,053 align.py process_cal():249 [1] seabird25p_salinity_onboard: instrument_sample_rate_hz = 7.99 INFO 2025-10-20 23:02:17,082 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2019.123.04_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-20 23:02:17,085 align.py process_cal():249 [1] seabird25p_dissolvedO2_port: instrument_sample_rate_hz = 7.99 INFO 2025-10-20 23:02:17,113 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2019.123.04_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-20 23:02:17,116 align.py process_cal():249 [1] seabird25p_oxygen_mll_port: instrument_sample_rate_hz = 7.99 INFO 2025-10-20 23:02:17,144 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2019.123.04_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-20 23:02:17,148 align.py process_cal():249 [1] seabird25p_oxygen_umolkg_port: instrument_sample_rate_hz = 7.99 INFO 2025-10-20 23:02:17,176 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2019.123.04_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-20 23:02:17,179 align.py process_cal():249 [1] seabird25p_dissolvedO2_stbd: instrument_sample_rate_hz = 7.99 INFO 2025-10-20 23:02:17,208 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2019.123.04_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-20 23:02:17,211 align.py process_cal():249 [1] seabird25p_oxygen_mll_stbd: instrument_sample_rate_hz = 7.99 INFO 2025-10-20 23:02:17,240 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2019.123.04_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-20 23:02:17,243 align.py process_cal():249 [1] seabird25p_oxygen_umolkg_stbd: instrument_sample_rate_hz = 7.99 INFO 2025-10-20 23:02:17,272 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2019.123.04_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-20 23:02:17,275 align.py process_cal():249 [1] seabird25p_beam_transmittance: instrument_sample_rate_hz = 7.99 INFO 2025-10-20 23:02:17,303 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2019.123.04_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-20 23:02:17,306 align.py process_cal():249 [1] seabird25p_depth: instrument_sample_rate_hz = 7.99 INFO 2025-10-20 23:02:17,339 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 5.00 INFO 2025-10-20 23:02:17,358 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/i2map/missionnetcdfs/2019.123.04/i2map_2019.123.04_align.nc INFO 2025-10-20 23:02:17,389 align.py write_netcdf():342 [1] Data variables written: navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, seabird25p_beam_transmittance, seabird25p_conductivity, seabird25p_conductivity_onboard, seabird25p_depth, seabird25p_dissolvedO2_port, seabird25p_dissolvedO2_stbd, seabird25p_latitude, seabird25p_longitude, seabird25p_oxygen_mll_port, seabird25p_oxygen_mll_stbd, seabird25p_oxygen_umolkg_port, seabird25p_oxygen_umolkg_stbd, seabird25p_salinity, seabird25p_salinity_onboard, seabird25p_temperature, seabird25p_temperature_onboard, seabird25p_time, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-10-20 23:02:17,391 process.py resample():273 [1] Resampling steps for 2019.123.04 INFO 2025-10-20 23:02:17,391 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-10-20 23:02:17,406 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/i2map/missionnetcdfs/2019.123.04/i2map_2019.123.04_align.nc mission netCDF file INFO 2025-10-20 23:02:17,409 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/i2map/missionnetcdfs/2019.123.04/i2map_2019.123.04_align.nc mission netCDF file INFO 2025-10-20 23:02:17,410 resample.py get_mission_start_end():1145 [1] navigation: 2019-05-03T17:23:02.302663680 to 2019-05-03T18:38:46.085952256 (0 days 00:00:00.029998080 before mission_end) INFO 2025-10-20 23:02:17,412 resample.py get_mission_start_end():1145 [1] seabird25p: 2019-05-03T17:22:35.464502272 to 2019-05-03T18:38:46.115950336 (0 days 00:00:00 before mission_end) INFO 2025-10-20 23:02:17,413 resample.py get_mission_start_end():1145 [1] tailcone : 2019-05-03T17:22:25.965153280 to 2019-05-03T18:38:46.085952256 (0 days 00:00:00.029998080 before mission_end) INFO 2025-10-20 23:02:17,414 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/i2map/missionnetcdfs/2019.123.04/i2map_2019.123.04_align.nc mission netCDF file INFO 2025-10-20 23:02:17,414 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-10-20 23:02:17,503 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-10-20 23:02:17,518 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-10-20 23:02:17,532 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-10-20 23:02:17,546 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-10-20 23:02:17,564 resample.py resample_variable():1031 [1] Resampling seabird25p_temperature with frequency 1S following 3 point median filter INFO 2025-10-20 23:02:17,581 resample.py resample_variable():1031 [1] Resampling seabird25p_conductivity with frequency 1S following 3 point median filter INFO 2025-10-20 23:02:17,598 resample.py resample_variable():1031 [1] Resampling seabird25p_salinity with frequency 1S following 3 point median filter INFO 2025-10-20 23:02:17,616 resample.py resample_variable():1031 [1] Resampling seabird25p_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-10-20 23:02:17,633 resample.py resample_variable():1031 [1] Resampling seabird25p_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-10-20 23:02:17,650 resample.py resample_variable():1031 [1] Resampling seabird25p_salinity_onboard with frequency 1S following 3 point median filter INFO 2025-10-20 23:02:17,667 resample.py resample_variable():1031 [1] Resampling seabird25p_dissolvedO2_port with frequency 1S following 3 point median filter INFO 2025-10-20 23:02:17,684 resample.py resample_variable():1031 [1] Resampling seabird25p_oxygen_mll_port with frequency 1S following 3 point median filter INFO 2025-10-20 23:02:17,700 resample.py resample_variable():1031 [1] Resampling seabird25p_oxygen_umolkg_port with frequency 1S following 3 point median filter INFO 2025-10-20 23:02:17,717 resample.py resample_variable():1031 [1] Resampling seabird25p_dissolvedO2_stbd with frequency 1S following 3 point median filter INFO 2025-10-20 23:02:17,734 resample.py resample_variable():1031 [1] Resampling seabird25p_oxygen_mll_stbd with frequency 1S following 3 point median filter INFO 2025-10-20 23:02:17,751 resample.py resample_variable():1031 [1] Resampling seabird25p_oxygen_umolkg_stbd with frequency 1S following 3 point median filter INFO 2025-10-20 23:02:17,767 resample.py resample_variable():1031 [1] Resampling seabird25p_beam_transmittance with frequency 1S following 3 point median filter INFO 2025-10-20 23:02:17,782 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-10-20 23:02:17,876 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/i2map/missionnetcdfs/2019.123.04/i2map_2019.123.04_1S.nc INFO 2025-10-20 23:02:17,878 process.py archive():337 [1] Archiving steps for 2019.123.04 INFO 2025-10-20 23:02:17,878 process.py archive():347 [1] nc_file_base = /data/auv_data/i2map/missionnetcdfs/2019.123.04/i2map_2019.123.04, BASE_PATH = /data/auv_data INFO 2025-10-20 23:02:17,879 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/i2map/missionnetcdfs/2019.123.04/i2map_2019.123.04 files to /Volumes/AUVCTD/surveys/2019/netcdf INFO 2025-10-20 23:02:17,880 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2019/netcdf/i2map_2019.123.04_1S.nc INFO 2025-10-20 23:02:17,888 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2019.123.04/i2map_2019.123.04_1S.nc /Volumes/AUVCTD/surveys/2019/netcdf done. INFO 2025-10-20 23:02:17,889 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2019/netcdf/i2map_2019.123.04_cal.nc INFO 2025-10-20 23:02:17,916 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2019.123.04/i2map_2019.123.04_cal.nc /Volumes/AUVCTD/surveys/2019/netcdf done. INFO 2025-10-20 23:02:17,917 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2019/netcdf/i2map_2019.123.04_align.nc INFO 2025-10-20 23:02:17,939 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2019.123.04/i2map_2019.123.04_align.nc /Volumes/AUVCTD/surveys/2019/netcdf done. INFO 2025-10-20 23:02:17,946 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2019.123.04/gps.nc /Volumes/AUVCTD/missionnetcdfs/2019/2019123/2019.123.04 done. INFO 2025-10-20 23:02:17,970 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2019.123.04/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2019/2019123/2019.123.04 done. INFO 2025-10-20 23:02:17,982 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2019.123.04/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2019/2019123/2019.123.04 done. INFO 2025-10-20 23:02:17,999 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2019.123.04/seabird25p.nc /Volumes/AUVCTD/missionnetcdfs/2019/2019123/2019.123.04 done. INFO 2025-10-20 23:02:18,009 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2019.123.04/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2019/2019123/2019.123.04 done. INFO 2025-10-20 23:02:18,009 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-10-20 23:02:18,010 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2019.123.04/i2map_2019.123.04_processing.log /Volumes/AUVCTD/surveys/2019/netcdf