INFO 2025-10-20 23:01:56,455 process.py process_mission():429 [1] commandline = /src/data/process_i2map.py -v --noinput --start_year 2019 --end_year 2019 --start_yd 1 --end_yd 365 --num_cores 1 --clobber
INFO 2025-10-20 23:01:56,455 process.py process_mission():449 [1] Processing i2map mission 2019.123.01 by user docker_user on host bc943cff5f21
INFO 2025-10-20 23:01:56,455 process.py download_process():165 [1] Download and processing steps for 2019.123.01
INFO 2025-10-20 23:01:56,455 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/M3/master/i2MAP/2019/05/20190503/20190503/2019.123.01
INFO 2025-10-20 23:01:56,455 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/M3/master/i2MAP/2019/05/20190503/20190503/2019.123.01 to /data/auv_data/i2map/missionlogs/2019.123.01
INFO 2025-10-20 23:01:56,574 logs2netcdfs.py download_process_logs():779 [1] Processing mission: i2map 2019.123.01
INFO 2025-10-20 23:01:56,574 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/i2map/missionlogs/2019.123.01/gps.log (12452 bytes)
INFO 2025-10-20 23:01:56,584 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/i2map/missionlogs/2019.123.01/navigation.log (998404 bytes)
INFO 2025-10-20 23:01:56,672 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/i2map/missionlogs/2019.123.01/parosci.log (296822 bytes)
INFO 2025-10-20 23:01:56,701 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/i2map/missionlogs/2019.123.01/seabird25p.log (585730 bytes)
INFO 2025-10-20 23:01:56,747 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/i2map/missionlogs/2019.123.01/seabird25p.log: [1]
INFO 2025-10-20 23:01:56,748 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/i2map/missionlogs/2019.123.01/tailCone.log (149947 bytes)
INFO 2025-10-20 23:01:56,772 logs2netcdfs.py download_process_logs():807 [1] Time to process: 0.20 seconds
INFO 2025-10-20 23:01:56,772 process.py calibrate():227 [1] Calibration steps for 2019.123.01
INFO 2025-10-20 23:01:56,818 calibrate.py _nudge_pos():1680 [1] seg#   end_sec_diff end_lon_diff end_lat_diff len(segi)   seg_min u_drift (cm/s) v_drift (cm/s)     start datetime of segment
INFO 2025-10-20 23:01:56,820 calibrate.py _nudge_pos():1711 [1]                   -            -            -         0      0.00              -              -                             -
INFO 2025-10-20 23:01:57,899 calibrate.py _nudge_pos():1806 [1]   139:        0.190   -0.0005959    0.0001598      2324      7.74        -11.435          3.823 2019-05-03T17:10:29.104261376
INFO 2025-10-20 23:01:58,119 calibrate.py _nudge_pos():1862 [1]  122:            -            -            -         4      0.01              -              -
INFO 2025-10-20 23:01:58,120 calibrate.py _nudge_pos():1868 [1] Points in final series = 2928
INFO 2025-10-20 23:01:58,448 calibrate.py _read_oxy_coeffs():1189 [1] Looking for calibration file for O2 sensor serial number 2935 on port side
INFO 2025-10-20 23:01:58,448 calibrate.py _read_oxy_coeffs():1219 [1] Executing: find "/Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files" -name "2935" 
INFO 2025-10-20 23:01:58,599 calibrate.py _read_oxy_coeffs():1238 [1] Found calibration date dirs: 2014_Nov 2021_Mar 2022_Apr
WARNING 2025-10-20 23:01:58,604 calibrate.py _cal_date_xml_files():1081 [1] Found 4 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/2935/2014_Nov
INFO 2025-10-20 23:01:58,604 calibrate.py _cal_date_xml_files():1087 [1] {xml_files}
WARNING 2025-10-20 23:01:58,609 calibrate.py _cal_date_xml_files():1081 [1] Found 4 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/2935/2021_Mar
INFO 2025-10-20 23:01:58,610 calibrate.py _cal_date_xml_files():1087 [1] {xml_files}
WARNING 2025-10-20 23:01:58,615 calibrate.py _cal_date_xml_files():1081 [1] Found 4 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/2935/2022_Apr
INFO 2025-10-20 23:01:58,615 calibrate.py _cal_date_xml_files():1087 [1] {xml_files}
INFO 2025-10-20 23:01:58,624 calibrate.py _read_oxy_coeffs():1247 [1] File /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/2935/2022_Apr/Oxygen_SBE43_2935.xml has CalibrationDate 2022-03-22 00:00:00+00:00
INFO 2025-10-20 23:01:58,624 calibrate.py _read_oxy_coeffs():1253 [1] Breaking from loop as /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/2935/2022_Apr/Oxygen_SBE43_2935.xml is after 2019.123.01 with mission_start=2019-05-03T17:00:41.474516992
INFO 2025-10-20 23:01:58,624 calibrate.py _read_oxy_coeffs():1270 [1] File /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/2935/2022_Apr/Oxygen_SBE43_2935.xml is the first calibration file, but is after 2019.123.01 with mission_start=2019-05-03T17:00:41.474516992
INFO 2025-10-20 23:01:58,755 calibrate.py _calibrated_oxygen():2513 [1] dissolvedO2_port: parsed from /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/2935/2022_Apr/Oxygen_SBE43_2935.xml file: {'Soc': 0.42595, 'offset': -0.5339, 'A': -0.0041113, 'B': 0.00020802, 'C': -3.0027e-06, 'D0': 2.5826, 'D1': 0.000192634, 'D2': -0.0464803, 'E': 0.036, 'Tau20': 1.09, 'H1': -0.033, 'H2': 5000.0, 'H3': 1450.0}
INFO 2025-10-20 23:01:58,759 calibrate.py _read_oxy_coeffs():1189 [1] Looking for calibration file for O2 sensor serial number 3488 on stbd side
INFO 2025-10-20 23:01:58,759 calibrate.py _read_oxy_coeffs():1219 [1] Executing: find "/Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files" -name "3488" 
INFO 2025-10-20 23:01:58,911 calibrate.py _read_oxy_coeffs():1238 [1] Found calibration date dirs: 2016_dec 2021_mar 2022_Jan
WARNING 2025-10-20 23:01:58,918 calibrate.py _cal_date_xml_files():1081 [1] Found 4 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/3488/2016_dec
INFO 2025-10-20 23:01:58,918 calibrate.py _cal_date_xml_files():1087 [1] {xml_files}
WARNING 2025-10-20 23:01:58,924 calibrate.py _cal_date_xml_files():1081 [1] Found 4 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/3488/2021_mar
INFO 2025-10-20 23:01:58,924 calibrate.py _cal_date_xml_files():1087 [1] {xml_files}
WARNING 2025-10-20 23:01:58,930 calibrate.py _cal_date_xml_files():1081 [1] Found 4 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/3488/2022_Jan
INFO 2025-10-20 23:01:58,930 calibrate.py _cal_date_xml_files():1087 [1] {xml_files}
INFO 2025-10-20 23:01:58,936 calibrate.py _read_oxy_coeffs():1247 [1] File /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/3488/2016_dec/43-3488.xml has CalibrationDate 2016-12-16 00:00:00+00:00
INFO 2025-10-20 23:01:58,936 calibrate.py _read_oxy_coeffs():1263 [1] File /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/3488/2016_dec/43-3488.xml is just before 2019.123.01 with mission_start=2019-05-03T17:00:41.474516992
INFO 2025-10-20 23:01:59,030 calibrate.py _calibrated_oxygen():2513 [1] dissolvedO2_stbd: parsed from /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/3488/2016_dec/43-3488.xml file: {'Soc': 0.44664, 'offset': -0.507, 'A': -0.0030812, 'B': 7.8442e-05, 'C': -9.0601e-07, 'D0': 2.5826, 'D1': 0.000192634, 'D2': -0.0464803, 'E': 0.036, 'Tau20': 1.44, 'H1': -0.033, 'H2': 5000.0, 'H3': 1450.0}
INFO 2025-10-20 23:01:59,181 calibrate.py _geometric_depth_correction():3423 [1] seabird25p: d_beg_time_diff: 11 seconds, d_end_time_diff: -1 seconds
INFO 2025-10-20 23:01:59,226 calibrate.py _geometric_depth_correction():3423 [1] seabird25p: d_beg_time_diff: 11 seconds, d_end_time_diff: -1 seconds
INFO 2025-10-20 23:01:59,228 calibrate.py _ctd_process():2919 [1] Performing range checking of ['seabird25p_salinity'] in 2019.123.01/seabird25p.nc
INFO 2025-10-20 23:01:59,229 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 seabird25p_salinity values to NaN
INFO 2025-10-20 23:01:59,229 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('seabird25p_salinity', Range(min=30, max=40))]
INFO 2025-10-20 23:01:59,229 calibrate.py _range_qc_combined_nc():936 [1] Done range checking seabird25p
INFO 2025-10-20 23:01:59,237 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/i2map/missionnetcdfs/2019.123.01/i2map_2019.123.01_cal.nc
INFO 2025-10-20 23:01:59,676 calibrate.py write_netcdf():3512 [1] Data variables written: depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, seabird25p_beam_transmittance, seabird25p_conductivity, seabird25p_conductivity_onboard, seabird25p_depth, seabird25p_dissolvedO2_port, seabird25p_dissolvedO2_stbd, seabird25p_oxygen_mll_port, seabird25p_oxygen_mll_stbd, seabird25p_oxygen_umolkg_port, seabird25p_oxygen_umolkg_stbd, seabird25p_salinity, seabird25p_salinity_onboard, seabird25p_temperature, seabird25p_temperature_onboard, seabird25p_time, tailcone_propRpm, tailcone_time, time
INFO 2025-10-20 23:01:59,679 process.py align():251 [1] Alignment steps for 2019.123.01
INFO 2025-10-20 23:01:59,699 align.py process_cal():139 [1] Processing i2map_2019.123.01_cal.nc from /data/auv_data/i2map/missionnetcdfs/2019.123.01
INFO 2025-10-20 23:01:59,704 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc
INFO 2025-10-20 23:01:59,706 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00
INFO 2025-10-20 23:01:59,718 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc
INFO 2025-10-20 23:01:59,720 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00
INFO 2025-10-20 23:01:59,731 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc
INFO 2025-10-20 23:01:59,734 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00
INFO 2025-10-20 23:01:59,741 align.py process_cal():161 [1] Skipping navigation_posx
INFO 2025-10-20 23:01:59,741 align.py process_cal():161 [1] Skipping navigation_posy
INFO 2025-10-20 23:01:59,745 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc
INFO 2025-10-20 23:01:59,747 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00
INFO 2025-10-20 23:01:59,759 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2019.123.01_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0)
INFO 2025-10-20 23:01:59,761 align.py process_cal():249 [1] seabird25p_temperature: instrument_sample_rate_hz = 7.99
INFO 2025-10-20 23:01:59,774 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2019.123.01_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0)
INFO 2025-10-20 23:01:59,776 align.py process_cal():249 [1] seabird25p_conductivity: instrument_sample_rate_hz = 7.99
INFO 2025-10-20 23:01:59,788 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2019.123.01_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0)
INFO 2025-10-20 23:01:59,790 align.py process_cal():249 [1] seabird25p_salinity: instrument_sample_rate_hz = 7.99
INFO 2025-10-20 23:01:59,803 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2019.123.01_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0)
INFO 2025-10-20 23:01:59,805 align.py process_cal():249 [1] seabird25p_temperature_onboard: instrument_sample_rate_hz = 7.99
INFO 2025-10-20 23:01:59,818 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2019.123.01_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0)
INFO 2025-10-20 23:01:59,820 align.py process_cal():249 [1] seabird25p_conductivity_onboard: instrument_sample_rate_hz = 7.99
INFO 2025-10-20 23:01:59,834 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2019.123.01_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0)
INFO 2025-10-20 23:01:59,836 align.py process_cal():249 [1] seabird25p_salinity_onboard: instrument_sample_rate_hz = 7.99
INFO 2025-10-20 23:01:59,848 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2019.123.01_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0)
INFO 2025-10-20 23:01:59,850 align.py process_cal():249 [1] seabird25p_dissolvedO2_port: instrument_sample_rate_hz = 7.99
INFO 2025-10-20 23:01:59,863 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2019.123.01_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0)
INFO 2025-10-20 23:01:59,865 align.py process_cal():249 [1] seabird25p_oxygen_mll_port: instrument_sample_rate_hz = 7.99
INFO 2025-10-20 23:01:59,877 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2019.123.01_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0)
INFO 2025-10-20 23:01:59,879 align.py process_cal():249 [1] seabird25p_oxygen_umolkg_port: instrument_sample_rate_hz = 7.99
INFO 2025-10-20 23:01:59,891 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2019.123.01_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0)
INFO 2025-10-20 23:01:59,893 align.py process_cal():249 [1] seabird25p_dissolvedO2_stbd: instrument_sample_rate_hz = 7.99
INFO 2025-10-20 23:01:59,906 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2019.123.01_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0)
INFO 2025-10-20 23:01:59,908 align.py process_cal():249 [1] seabird25p_oxygen_mll_stbd: instrument_sample_rate_hz = 7.99
INFO 2025-10-20 23:01:59,921 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2019.123.01_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0)
INFO 2025-10-20 23:01:59,923 align.py process_cal():249 [1] seabird25p_oxygen_umolkg_stbd: instrument_sample_rate_hz = 7.99
INFO 2025-10-20 23:01:59,937 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2019.123.01_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0)
INFO 2025-10-20 23:01:59,939 align.py process_cal():249 [1] seabird25p_beam_transmittance: instrument_sample_rate_hz = 7.99
INFO 2025-10-20 23:01:59,952 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2019.123.01_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0)
INFO 2025-10-20 23:01:59,954 align.py process_cal():249 [1] seabird25p_depth: instrument_sample_rate_hz = 7.99
INFO 2025-10-20 23:01:59,970 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 5.00
INFO 2025-10-20 23:01:59,982 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/i2map/missionnetcdfs/2019.123.01/i2map_2019.123.01_align.nc
INFO 2025-10-20 23:02:00,011 align.py write_netcdf():342 [1] Data variables written: navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, seabird25p_beam_transmittance, seabird25p_conductivity, seabird25p_conductivity_onboard, seabird25p_depth, seabird25p_dissolvedO2_port, seabird25p_dissolvedO2_stbd, seabird25p_latitude, seabird25p_longitude, seabird25p_oxygen_mll_port, seabird25p_oxygen_mll_stbd, seabird25p_oxygen_umolkg_port, seabird25p_oxygen_umolkg_stbd, seabird25p_salinity, seabird25p_salinity_onboard, seabird25p_temperature, seabird25p_temperature_onboard, seabird25p_time, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time
INFO 2025-10-20 23:02:00,013 process.py resample():273 [1] Resampling steps for 2019.123.01
INFO 2025-10-20 23:02:00,014 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m
INFO 2025-10-20 23:02:00,028 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/i2map/missionnetcdfs/2019.123.01/i2map_2019.123.01_align.nc mission netCDF file
INFO 2025-10-20 23:02:00,031 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/i2map/missionnetcdfs/2019.123.01/i2map_2019.123.01_align.nc mission netCDF file
INFO 2025-10-20 23:02:00,032 resample.py get_mission_start_end():1145 [1] navigation: 2019-05-03T17:01:05.572866048 to 2019-05-03T17:10:50.912767488 (0 days 00:00:00 before mission_end)
INFO 2025-10-20 23:02:00,034 resample.py get_mission_start_end():1145 [1] seabird25p: 2019-05-03T17:00:41.474516992 to 2019-05-03T17:10:50.892768768 (0 days 00:00:00.019998720 before mission_end)
INFO 2025-10-20 23:02:00,035 resample.py get_mission_start_end():1145 [1] tailcone  : 2019-05-03T17:00:28.315418368 to 2019-05-03T17:10:50.752778496 (0 days 00:00:00.159988992 before mission_end)
INFO 2025-10-20 23:02:00,036 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/i2map/missionnetcdfs/2019.123.01/i2map_2019.123.01_align.nc mission netCDF file
INFO 2025-10-20 23:02:00,036 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter 
INFO 2025-10-20 23:02:00,077 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter
INFO 2025-10-20 23:02:00,087 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter
INFO 2025-10-20 23:02:00,096 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter
INFO 2025-10-20 23:02:00,106 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter
INFO 2025-10-20 23:02:00,116 resample.py resample_variable():1031 [1] Resampling seabird25p_temperature with frequency 1S following 3 point median filter
INFO 2025-10-20 23:02:00,125 resample.py resample_variable():1031 [1] Resampling seabird25p_conductivity with frequency 1S following 3 point median filter
INFO 2025-10-20 23:02:00,134 resample.py resample_variable():1031 [1] Resampling seabird25p_salinity with frequency 1S following 3 point median filter
INFO 2025-10-20 23:02:00,144 resample.py resample_variable():1031 [1] Resampling seabird25p_temperature_onboard with frequency 1S following 3 point median filter
INFO 2025-10-20 23:02:00,154 resample.py resample_variable():1031 [1] Resampling seabird25p_conductivity_onboard with frequency 1S following 3 point median filter
INFO 2025-10-20 23:02:00,164 resample.py resample_variable():1031 [1] Resampling seabird25p_salinity_onboard with frequency 1S following 3 point median filter
INFO 2025-10-20 23:02:00,174 resample.py resample_variable():1031 [1] Resampling seabird25p_dissolvedO2_port with frequency 1S following 3 point median filter
INFO 2025-10-20 23:02:00,184 resample.py resample_variable():1031 [1] Resampling seabird25p_oxygen_mll_port with frequency 1S following 3 point median filter
INFO 2025-10-20 23:02:00,194 resample.py resample_variable():1031 [1] Resampling seabird25p_oxygen_umolkg_port with frequency 1S following 3 point median filter
INFO 2025-10-20 23:02:00,204 resample.py resample_variable():1031 [1] Resampling seabird25p_dissolvedO2_stbd with frequency 1S following 3 point median filter
INFO 2025-10-20 23:02:00,213 resample.py resample_variable():1031 [1] Resampling seabird25p_oxygen_mll_stbd with frequency 1S following 3 point median filter
INFO 2025-10-20 23:02:00,223 resample.py resample_variable():1031 [1] Resampling seabird25p_oxygen_umolkg_stbd with frequency 1S following 3 point median filter
INFO 2025-10-20 23:02:00,232 resample.py resample_variable():1031 [1] Resampling seabird25p_beam_transmittance with frequency 1S following 3 point median filter
INFO 2025-10-20 23:02:00,243 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter
INFO 2025-10-20 23:02:00,329 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/i2map/missionnetcdfs/2019.123.01/i2map_2019.123.01_1S.nc
INFO 2025-10-20 23:02:00,330 process.py archive():337 [1] Archiving steps for 2019.123.01
INFO 2025-10-20 23:02:00,331 process.py archive():347 [1] nc_file_base = /data/auv_data/i2map/missionnetcdfs/2019.123.01/i2map_2019.123.01, BASE_PATH = /data/auv_data
INFO 2025-10-20 23:02:00,331 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/i2map/missionnetcdfs/2019.123.01/i2map_2019.123.01 files to /Volumes/AUVCTD/surveys/2019/netcdf
INFO 2025-10-20 23:02:00,332 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2019/netcdf/i2map_2019.123.01_1S.nc
INFO 2025-10-20 23:02:00,344 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2019.123.01/i2map_2019.123.01_1S.nc /Volumes/AUVCTD/surveys/2019/netcdf done.
INFO 2025-10-20 23:02:00,346 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2019/netcdf/i2map_2019.123.01_cal.nc
INFO 2025-10-20 23:02:00,356 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2019.123.01/i2map_2019.123.01_cal.nc /Volumes/AUVCTD/surveys/2019/netcdf done.
INFO 2025-10-20 23:02:00,357 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2019/netcdf/i2map_2019.123.01_align.nc
INFO 2025-10-20 23:02:00,371 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2019.123.01/i2map_2019.123.01_align.nc /Volumes/AUVCTD/surveys/2019/netcdf done.
INFO 2025-10-20 23:02:00,379 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2019.123.01/gps.nc /Volumes/AUVCTD/missionnetcdfs/2019/2019123/2019.123.01 done.
INFO 2025-10-20 23:02:00,389 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2019.123.01/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2019/2019123/2019.123.01 done.
INFO 2025-10-20 23:02:00,395 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2019.123.01/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2019/2019123/2019.123.01 done.
INFO 2025-10-20 23:02:00,405 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2019.123.01/seabird25p.nc /Volumes/AUVCTD/missionnetcdfs/2019/2019123/2019.123.01 done.
INFO 2025-10-20 23:02:00,412 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2019.123.01/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2019/2019123/2019.123.01 done.
INFO 2025-10-20 23:02:00,412 archive.py copy_to_AUVTCD():116 [1] Archiving product files
INFO 2025-10-20 23:02:00,412 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2019.123.01/i2map_2019.123.01_processing.log /Volumes/AUVCTD/surveys/2019/netcdf