INFO 2025-10-20 22:51:34,903 process.py process_mission():429 [1] commandline = /src/data/process_i2map.py -v --noinput --start_year 2019 --end_year 2019 --start_yd 1 --end_yd 365 --num_cores 1 --clobber INFO 2025-10-20 22:51:34,903 process.py process_mission():449 [1] Processing i2map mission 2019.007.07 by user docker_user on host bc943cff5f21 INFO 2025-10-20 22:51:34,904 process.py download_process():165 [1] Download and processing steps for 2019.007.07 INFO 2025-10-20 22:51:34,904 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/M3/master/i2MAP/2019/01/20190107/2019.007.07 INFO 2025-10-20 22:51:34,904 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/M3/master/i2MAP/2019/01/20190107/2019.007.07 to /data/auv_data/i2map/missionlogs/2019.007.07 INFO 2025-10-20 22:51:35,395 logs2netcdfs.py download_process_logs():779 [1] Processing mission: i2map 2019.007.07 INFO 2025-10-20 22:51:35,396 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/i2map/missionlogs/2019.007.07/gps.log (382964 bytes) INFO 2025-10-20 22:51:35,443 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/i2map/missionlogs/2019.007.07/gps.log: [1025 3765 3766] INFO 2025-10-20 22:51:35,444 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/i2map/missionlogs/2019.007.07/navigation.log (29846044 bytes) INFO 2025-10-20 22:51:37,531 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/i2map/missionlogs/2019.007.07/navigation.log: [ 1805 1806 1807 1808 1809 1810 1811 1812 1813 1814 15516 15517 15518 15519 15520 15521 15522 15523 15524 15525 29842 29843 29844 29845 29846 29847 29848 29849 29850 29851 43323 43324 43325 43326 43327 43328 43329 43330 43331 43332 55634 55635 55636 55637 55638 55639 55640 55641 55642 55643 66305 66306 66307 66308 66309 66310 80051 80052 80053 80054 80055 80056 80057 80058 80059 80060] INFO 2025-10-20 22:51:37,669 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/i2map/missionlogs/2019.007.07/parosci.log (8403446 bytes) INFO 2025-10-20 22:51:38,336 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/i2map/missionlogs/2019.007.07/parosci.log: [ 3954 3955 3956 3957 3958 3959 3960 3961 3962 3963 3964 3965 3966 3967 3968 3969 3970 3971 3972 3973 3974 31245 31246 31247 31248 31249 31250 31251 31252 31253 31254 31255 31256 31257 31258 31259 31260 31261 31262 31263 31264 31265 59758 59759 59760 59761 59762 59763 59764 59765 59766 59767 59768 59769 59770 59771 59772 59773 59774 59775 59776 59777 59778 86589 86590 86591 86592 86593 86594 86595 86596 86597 86598 86599 86600 86601 86602 86603 86604 86605 86606 86607 86608 86609 111093 111094 111095 111096 111097 111098 111099 111100 111101 111102 111103 111104 111105 111106 111107 111108 111109 111110 111111 111112 111113 132333 132334 132335 132336 132337 132338 132339 132340 132341 132342 132343 132344 159693 159694 159695 159696 159697 159698 159699 159700 159701 159702 159703 159704 159705 159706 159707 159708 159709 159710 159711 159712 159713] INFO 2025-10-20 22:51:38,358 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/i2map/missionlogs/2019.007.07/seabird25p.log (16867210 bytes) INFO 2025-10-20 22:51:39,474 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/i2map/missionlogs/2019.007.07/seabird25p.log: [ 1 3099 3100 3101 3102 3103 3104 3105 3106 3107 3108 3109 3110 3111 3112 3113 3114 3115 25021 25022 25023 25024 25025 25026 25027 25028 25029 25030 25031 25032 25033 25034 25035 25036 25037 47927 47928 47929 47930 47931 47932 47933 47934 47935 47936 47937 47938 47939 47940 47941 47942 47943 69481 69482 69483 69484 69485 69486 69487 69488 69489 69490 69491 69492 69493 69494 69495 69496 69497 89165 89166 89167 89168 89169 89170 89171 89172 89173 89174 89175 89176 89177 89178 89179 89180 89181 106227 106228 106229 106230 106231 106232 106233 106234 106235 128205 128206 128207 128208 128209 128210 128211 128212 128213 128214 128215 128216 128217 128218 128219 128220 128221] INFO 2025-10-20 22:51:39,530 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/i2map/missionlogs/2019.007.07/tailCone.log (4222843 bytes) INFO 2025-10-20 22:51:40,025 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/i2map/missionlogs/2019.007.07/tailCone.log: [ 1997 1998 1999 2000 2001 2002 2003 2004 2005 2006 15708 15709 15710 15711 15712 15713 15714 15715 15716 15717 30034 30035 30036 30037 30038 30039 30040 30041 30042 30043 43515 43516 43517 43518 43519 43520 43521 43522 43523 43524 43525 55826 55827 55828 55829 55830 55831 55832 55833 55834 55835 66497 66498 66499 66500 66501 66502 80243 80244 80245 80246 80247 80248 80249 80250 80251 80252 80253] INFO 2025-10-20 22:51:40,033 logs2netcdfs.py download_process_logs():807 [1] Time to process: 4.64 seconds INFO 2025-10-20 22:51:40,034 process.py calibrate():227 [1] Calibration steps for 2019.007.07 INFO 2025-10-20 22:51:54,207 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-10-20 22:51:54,209 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-10-20 22:51:55,096 calibrate.py _nudge_pos():1806 [1] 126: 0.070 0.0036056 0.0127665 61334 204.59 2.618 11.563 2019-01-07T20:44:49.085870336 INFO 2025-10-20 22:52:03,993 calibrate.py _nudge_pos():1806 [1] 1008: 0.140 0.0000040 0.0000064 15 0.05 12.836 25.274 2019-01-07T20:59:33.085312256 INFO 2025-10-20 22:52:11,472 calibrate.py _nudge_pos():1806 [1] 1791: 0.180 -0.0000178 0.0000462 20 0.06 -41.842 135.279 2019-01-07T21:12:38.867671552 INFO 2025-10-20 22:52:16,998 calibrate.py _nudge_pos():1806 [1] 2363: 0.020 0.0000171 0.0000234 35 0.11 22.456 38.246 2019-01-07T21:22:17.068061952 INFO 2025-10-20 22:52:45,488 calibrate.py _nudge_pos():1862 [1] 5265: - - - 2 0.00 - - INFO 2025-10-20 22:52:45,488 calibrate.py _nudge_pos():1868 [1] Points in final series = 87433 INFO 2025-10-20 22:52:56,355 calibrate.py _read_oxy_coeffs():1189 [1] Looking for calibration file for O2 sensor serial number 2935 on port side INFO 2025-10-20 22:52:56,357 calibrate.py _read_oxy_coeffs():1219 [1] Executing: find "/Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files" -name "2935" INFO 2025-10-20 22:52:56,879 calibrate.py _read_oxy_coeffs():1238 [1] Found calibration date dirs: 2014_Nov 2021_Mar 2022_Apr WARNING 2025-10-20 22:52:56,884 calibrate.py _cal_date_xml_files():1081 [1] Found 4 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/2935/2014_Nov INFO 2025-10-20 22:52:56,884 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-20 22:52:56,889 calibrate.py _cal_date_xml_files():1081 [1] Found 4 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/2935/2021_Mar INFO 2025-10-20 22:52:56,890 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-20 22:52:56,894 calibrate.py _cal_date_xml_files():1081 [1] Found 4 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/2935/2022_Apr INFO 2025-10-20 22:52:56,894 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} INFO 2025-10-20 22:52:56,901 calibrate.py _read_oxy_coeffs():1247 [1] File /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/2935/2022_Apr/Oxygen_SBE43_2935.xml has CalibrationDate 2022-03-22 00:00:00+00:00 INFO 2025-10-20 22:52:56,901 calibrate.py _read_oxy_coeffs():1253 [1] Breaking from loop as /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/2935/2022_Apr/Oxygen_SBE43_2935.xml is after 2019.007.07 with mission_start=2019-01-07T17:18:21.798478080 INFO 2025-10-20 22:52:56,901 calibrate.py _read_oxy_coeffs():1270 [1] File /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/2935/2022_Apr/Oxygen_SBE43_2935.xml is the first calibration file, but is after 2019.007.07 with mission_start=2019-01-07T17:18:21.798478080 INFO 2025-10-20 22:52:59,416 calibrate.py _calibrated_oxygen():2513 [1] dissolvedO2_port: parsed from /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/2935/2022_Apr/Oxygen_SBE43_2935.xml file: {'Soc': 0.42595, 'offset': -0.5339, 'A': -0.0041113, 'B': 0.00020802, 'C': -3.0027e-06, 'D0': 2.5826, 'D1': 0.000192634, 'D2': -0.0464803, 'E': 0.036, 'Tau20': 1.09, 'H1': -0.033, 'H2': 5000.0, 'H3': 1450.0} INFO 2025-10-20 22:52:59,421 calibrate.py _read_oxy_coeffs():1189 [1] Looking for calibration file for O2 sensor serial number 3488 on stbd side INFO 2025-10-20 22:52:59,421 calibrate.py _read_oxy_coeffs():1219 [1] Executing: find "/Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files" -name "3488" INFO 2025-10-20 22:52:59,536 calibrate.py _read_oxy_coeffs():1238 [1] Found calibration date dirs: 2016_dec 2021_mar 2022_Jan WARNING 2025-10-20 22:52:59,540 calibrate.py _cal_date_xml_files():1081 [1] Found 4 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/3488/2016_dec INFO 2025-10-20 22:52:59,540 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-20 22:52:59,546 calibrate.py _cal_date_xml_files():1081 [1] Found 4 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/3488/2021_mar INFO 2025-10-20 22:52:59,546 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-20 22:52:59,550 calibrate.py _cal_date_xml_files():1081 [1] Found 4 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/3488/2022_Jan INFO 2025-10-20 22:52:59,550 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} INFO 2025-10-20 22:52:59,556 calibrate.py _read_oxy_coeffs():1247 [1] File /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/3488/2016_dec/43-3488.xml has CalibrationDate 2016-12-16 00:00:00+00:00 INFO 2025-10-20 22:52:59,556 calibrate.py _read_oxy_coeffs():1263 [1] File /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/3488/2016_dec/43-3488.xml is just before 2019.007.07 with mission_start=2019-01-07T17:18:21.798478080 INFO 2025-10-20 22:53:02,047 calibrate.py _calibrated_oxygen():2513 [1] dissolvedO2_stbd: parsed from /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/3488/2016_dec/43-3488.xml file: {'Soc': 0.44664, 'offset': -0.507, 'A': -0.0030812, 'B': 7.8442e-05, 'C': -9.0601e-07, 'D0': 2.5826, 'D1': 0.000192634, 'D2': -0.0464803, 'E': 0.036, 'Tau20': 1.44, 'H1': -0.033, 'H2': 5000.0, 'H3': 1450.0} INFO 2025-10-20 22:53:05,501 calibrate.py _geometric_depth_correction():3423 [1] seabird25p: d_beg_time_diff: 9 seconds, d_end_time_diff: -1 seconds INFO 2025-10-20 22:53:06,531 calibrate.py _geometric_depth_correction():3423 [1] seabird25p: d_beg_time_diff: 9 seconds, d_end_time_diff: -1 seconds INFO 2025-10-20 22:53:06,534 calibrate.py _ctd_process():2919 [1] Performing range checking of ['seabird25p_salinity'] in 2019.007.07/seabird25p.nc INFO 2025-10-20 22:53:06,535 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 seabird25p_salinity values to NaN INFO 2025-10-20 22:53:06,535 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('seabird25p_salinity', Range(min=30, max=40))] INFO 2025-10-20 22:53:06,535 calibrate.py _range_qc_combined_nc():936 [1] Done range checking seabird25p INFO 2025-10-20 22:53:08,180 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/i2map/missionnetcdfs/2019.007.07/i2map_2019.007.07_cal.nc INFO 2025-10-20 22:53:18,071 calibrate.py write_netcdf():3512 [1] Data variables written: depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, seabird25p_beam_transmittance, seabird25p_conductivity, seabird25p_conductivity_onboard, seabird25p_depth, seabird25p_dissolvedO2_port, seabird25p_dissolvedO2_stbd, seabird25p_oxygen_mll_port, seabird25p_oxygen_mll_stbd, seabird25p_oxygen_umolkg_port, seabird25p_oxygen_umolkg_stbd, seabird25p_salinity, seabird25p_salinity_onboard, seabird25p_temperature, seabird25p_temperature_onboard, seabird25p_time, tailcone_propRpm, tailcone_time, time INFO 2025-10-20 22:53:18,074 process.py align():251 [1] Alignment steps for 2019.007.07 INFO 2025-10-20 22:53:18,095 align.py process_cal():139 [1] Processing i2map_2019.007.07_cal.nc from /data/auv_data/i2map/missionnetcdfs/2019.007.07 INFO 2025-10-20 22:53:18,120 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-10-20 22:53:18,123 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-10-20 22:53:18,191 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-10-20 22:53:18,195 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-10-20 22:53:18,255 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-10-20 22:53:18,259 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-10-20 22:53:18,294 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-10-20 22:53:18,294 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-10-20 22:53:18,318 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-10-20 22:53:18,322 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-10-20 22:53:18,386 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2019.007.07_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-20 22:53:18,392 align.py process_cal():249 [1] seabird25p_temperature: instrument_sample_rate_hz = 7.99 INFO 2025-10-20 22:53:18,477 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2019.007.07_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-20 22:53:18,484 align.py process_cal():249 [1] seabird25p_conductivity: instrument_sample_rate_hz = 7.99 INFO 2025-10-20 22:53:18,566 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2019.007.07_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-20 22:53:18,571 align.py process_cal():249 [1] seabird25p_salinity: instrument_sample_rate_hz = 7.99 INFO 2025-10-20 22:53:18,659 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2019.007.07_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-20 22:53:18,664 align.py process_cal():249 [1] seabird25p_temperature_onboard: instrument_sample_rate_hz = 7.99 INFO 2025-10-20 22:53:18,747 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2019.007.07_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-20 22:53:18,752 align.py process_cal():249 [1] seabird25p_conductivity_onboard: instrument_sample_rate_hz = 7.99 INFO 2025-10-20 22:53:18,834 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2019.007.07_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-20 22:53:18,840 align.py process_cal():249 [1] seabird25p_salinity_onboard: instrument_sample_rate_hz = 7.99 INFO 2025-10-20 22:53:18,924 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2019.007.07_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-20 22:53:18,929 align.py process_cal():249 [1] seabird25p_dissolvedO2_port: instrument_sample_rate_hz = 7.99 INFO 2025-10-20 22:53:19,015 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2019.007.07_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-20 22:53:19,020 align.py process_cal():249 [1] seabird25p_oxygen_mll_port: instrument_sample_rate_hz = 7.99 INFO 2025-10-20 22:53:19,104 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2019.007.07_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-20 22:53:19,109 align.py process_cal():249 [1] seabird25p_oxygen_umolkg_port: instrument_sample_rate_hz = 7.99 INFO 2025-10-20 22:53:19,193 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2019.007.07_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-20 22:53:19,199 align.py process_cal():249 [1] seabird25p_dissolvedO2_stbd: instrument_sample_rate_hz = 7.99 INFO 2025-10-20 22:53:19,282 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2019.007.07_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-20 22:53:19,288 align.py process_cal():249 [1] seabird25p_oxygen_mll_stbd: instrument_sample_rate_hz = 7.99 INFO 2025-10-20 22:53:19,370 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2019.007.07_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-20 22:53:19,376 align.py process_cal():249 [1] seabird25p_oxygen_umolkg_stbd: instrument_sample_rate_hz = 7.99 INFO 2025-10-20 22:53:19,466 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2019.007.07_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-20 22:53:19,472 align.py process_cal():249 [1] seabird25p_beam_transmittance: instrument_sample_rate_hz = 7.99 INFO 2025-10-20 22:53:19,557 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2019.007.07_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-20 22:53:19,563 align.py process_cal():249 [1] seabird25p_depth: instrument_sample_rate_hz = 7.99 INFO 2025-10-20 22:53:19,657 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 5.00 INFO 2025-10-20 22:53:19,700 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/i2map/missionnetcdfs/2019.007.07/i2map_2019.007.07_align.nc INFO 2025-10-20 22:53:19,752 align.py write_netcdf():342 [1] Data variables written: navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, seabird25p_beam_transmittance, seabird25p_conductivity, seabird25p_conductivity_onboard, seabird25p_depth, seabird25p_dissolvedO2_port, seabird25p_dissolvedO2_stbd, seabird25p_latitude, seabird25p_longitude, seabird25p_oxygen_mll_port, seabird25p_oxygen_mll_stbd, seabird25p_oxygen_umolkg_port, seabird25p_oxygen_umolkg_stbd, seabird25p_salinity, seabird25p_salinity_onboard, seabird25p_temperature, seabird25p_temperature_onboard, seabird25p_time, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-10-20 22:53:19,754 process.py resample():273 [1] Resampling steps for 2019.007.07 INFO 2025-10-20 22:53:19,754 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-10-20 22:53:19,771 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/i2map/missionnetcdfs/2019.007.07/i2map_2019.007.07_align.nc mission netCDF file INFO 2025-10-20 22:53:19,775 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/i2map/missionnetcdfs/2019.007.07/i2map_2019.007.07_align.nc mission netCDF file INFO 2025-10-20 22:53:19,776 resample.py get_mission_start_end():1145 [1] navigation: 2019-01-07T17:18:48.286663424 to 2019-01-07T22:11:21.474675712 (0 days 00:00:00.019998720 before mission_end) INFO 2025-10-20 22:53:19,779 resample.py get_mission_start_end():1145 [1] seabird25p: 2019-01-07T17:18:21.798478080 to 2019-01-07T22:11:21.494674432 (0 days 00:00:00 before mission_end) INFO 2025-10-20 22:53:19,781 resample.py get_mission_start_end():1145 [1] tailcone : 2019-01-07T17:18:09.929291264 to 2019-01-07T22:11:21.354683904 (0 days 00:00:00.139990528 before mission_end) INFO 2025-10-20 22:53:19,782 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/i2map/missionnetcdfs/2019.007.07/i2map_2019.007.07_align.nc mission netCDF file INFO 2025-10-20 22:53:19,782 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-10-20 22:53:20,035 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-10-20 22:53:20,070 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-10-20 22:53:20,104 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-10-20 22:53:20,137 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-10-20 22:53:20,183 resample.py resample_variable():1031 [1] Resampling seabird25p_temperature with frequency 1S following 3 point median filter INFO 2025-10-20 22:53:20,230 resample.py resample_variable():1031 [1] Resampling seabird25p_conductivity with frequency 1S following 3 point median filter INFO 2025-10-20 22:53:20,277 resample.py resample_variable():1031 [1] Resampling seabird25p_salinity with frequency 1S following 3 point median filter INFO 2025-10-20 22:53:20,322 resample.py resample_variable():1031 [1] Resampling seabird25p_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-10-20 22:53:20,367 resample.py resample_variable():1031 [1] Resampling seabird25p_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-10-20 22:53:20,413 resample.py resample_variable():1031 [1] Resampling seabird25p_salinity_onboard with frequency 1S following 3 point median filter INFO 2025-10-20 22:53:20,461 resample.py resample_variable():1031 [1] Resampling seabird25p_dissolvedO2_port with frequency 1S following 3 point median filter INFO 2025-10-20 22:53:20,511 resample.py resample_variable():1031 [1] Resampling seabird25p_oxygen_mll_port with frequency 1S following 3 point median filter INFO 2025-10-20 22:53:20,563 resample.py resample_variable():1031 [1] Resampling seabird25p_oxygen_umolkg_port with frequency 1S following 3 point median filter INFO 2025-10-20 22:53:20,628 resample.py resample_variable():1031 [1] Resampling seabird25p_dissolvedO2_stbd with frequency 1S following 3 point median filter INFO 2025-10-20 22:53:20,681 resample.py resample_variable():1031 [1] Resampling seabird25p_oxygen_mll_stbd with frequency 1S following 3 point median filter INFO 2025-10-20 22:53:20,742 resample.py resample_variable():1031 [1] Resampling seabird25p_oxygen_umolkg_stbd with frequency 1S following 3 point median filter INFO 2025-10-20 22:53:20,808 resample.py resample_variable():1031 [1] Resampling seabird25p_beam_transmittance with frequency 1S following 3 point median filter INFO 2025-10-20 22:53:20,844 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-10-20 22:53:21,009 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/i2map/missionnetcdfs/2019.007.07/i2map_2019.007.07_1S.nc INFO 2025-10-20 22:53:21,010 process.py archive():337 [1] Archiving steps for 2019.007.07 INFO 2025-10-20 22:53:21,011 process.py archive():347 [1] nc_file_base = /data/auv_data/i2map/missionnetcdfs/2019.007.07/i2map_2019.007.07, BASE_PATH = /data/auv_data INFO 2025-10-20 22:53:21,012 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/i2map/missionnetcdfs/2019.007.07/i2map_2019.007.07 files to /Volumes/AUVCTD/surveys/2019/netcdf INFO 2025-10-20 22:53:21,016 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2019/netcdf/i2map_2019.007.07_1S.nc INFO 2025-10-20 22:53:21,033 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2019.007.07/i2map_2019.007.07_1S.nc /Volumes/AUVCTD/surveys/2019/netcdf done. INFO 2025-10-20 22:53:21,034 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2019/netcdf/i2map_2019.007.07_cal.nc INFO 2025-10-20 22:53:21,131 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2019.007.07/i2map_2019.007.07_cal.nc /Volumes/AUVCTD/surveys/2019/netcdf done. INFO 2025-10-20 22:53:21,132 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2019/netcdf/i2map_2019.007.07_align.nc INFO 2025-10-20 22:53:21,217 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2019.007.07/i2map_2019.007.07_align.nc /Volumes/AUVCTD/surveys/2019/netcdf done. INFO 2025-10-20 22:53:21,229 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2019.007.07/gps.nc /Volumes/AUVCTD/missionnetcdfs/2019/2019007/2019.007.07 done. INFO 2025-10-20 22:53:21,332 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2019.007.07/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2019/2019007/2019.007.07 done. INFO 2025-10-20 22:53:21,360 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2019.007.07/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2019/2019007/2019.007.07 done. INFO 2025-10-20 22:53:21,411 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2019.007.07/seabird25p.nc /Volumes/AUVCTD/missionnetcdfs/2019/2019007/2019.007.07 done. INFO 2025-10-20 22:53:21,432 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2019.007.07/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2019/2019007/2019.007.07 done. INFO 2025-10-20 22:53:21,432 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-10-20 22:53:21,432 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2019.007.07/i2map_2019.007.07_processing.log /Volumes/AUVCTD/surveys/2019/netcdf