INFO 2025-06-27 01:45:10,059 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2015 --end_year 2025 --num_cores 1 -v --noinput --clobber INFO 2025-06-27 01:45:10,059 process.py process_mission():434 [1] dorado_info[mission]["comment"] = Aborted Monterey Bay Diamond Mission - 10 Gulpers taken, though - aMBTS1911* QC note: Best CTD is ctd1 - ctdToUse = ctd1 INFO 2025-06-27 01:45:10,059 process.py process_mission():449 [1] Processing Monterey Bay Diamond mission 2019.350.01 by user docker_user on host 355841a7028c INFO 2025-06-27 01:45:10,059 process.py download_process():165 [1] Download and processing steps for 2019.350.01 INFO 2025-06-27 01:45:10,060 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2019/2019350/2019.350.01 INFO 2025-06-27 01:45:10,060 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2019/2019350/2019.350.01 to /data/auv_data/dorado/missionlogs/2019.350.01 INFO 2025-06-27 01:45:12,543 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2019.350.01 INFO 2025-06-27 01:45:12,543 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2019.350.01/ctdDriver.log (7169862 bytes) INFO 2025-06-27 01:45:13,039 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/dorado/missionlogs/2019.350.01/ctdDriver.log: [11900 11901 11902 11903 11904 11905 11906 11907 23369 23370 23371 23372 23373 23374 23375 23376 23377 34803 34804 34805 34806 34807 34808 34809 34810 34811 34812 48842 48843 48844 48845 48846 48847 48848 48849 48850 73487 73488 73489 73490 73491] INFO 2025-06-27 01:45:13,060 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2019.350.01/ctdDriver2.log (7169471 bytes) INFO 2025-06-27 01:45:13,566 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/dorado/missionlogs/2019.350.01/ctdDriver2.log: [11897 11898 11899 11900 11901 11902 11903 11904 23366 23367 23368 23369 23370 23371 23372 23373 23374 34799 34800 34801 34802 34803 34804 34805 34806 34807 34808 48839 48840 48841 48842 48843 48844 48845 48846 48847 73483 73484 73485 73486 73487] INFO 2025-06-27 01:45:13,597 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2019.350.01/gps.log (544172 bytes) INFO 2025-06-27 01:45:13,661 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/dorado/missionlogs/2019.350.01/gps.log: [1035 1036 1186 1187 7248] INFO 2025-06-27 01:45:13,663 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2019.350.01/hydroscatlog.log (6278602 bytes) INFO 2025-06-27 01:45:14,302 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/dorado/missionlogs/2019.350.01/hydroscatlog.log: [11985 11986 11987 11988 11989 11990 11991 11992 23449 23450 23451 23452 23453 23454 23455 23456 23457 34876 34877 34878 34879 34880 34881 34882 34883 34884 34885 48910 48911 48912 48913 48914 48915 48916 48917 48918 68434 73542 73543 73544 73545 73546] INFO 2025-06-27 01:45:14,323 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2019.350.01/navigation.log (27617014 bytes) INFO 2025-06-27 01:45:16,270 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/dorado/missionlogs/2019.350.01/navigation.log: [14815 14816 14817 14818 14819 14820 14821 14822 14823 14824 14825 29152 29153 29154 29155 29156 29157 29158 29159 29160 29161 29162 29163 43444 43445 43446 43447 43448 43449 43450 43451 43452 43453 43454 43455 43456 60994 60995 60996 60997 60998 60999 61000 61001 61002 61003 61004 61005 91802 91803 91804 91805 91806 91807 91808] INFO 2025-06-27 01:45:16,382 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2019.350.01/isuslog.log (464533 bytes) INFO 2025-06-27 01:45:16,429 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/dorado/missionlogs/2019.350.01/isuslog.log: [ 2278 4513 6739 6740 9475 14277] INFO 2025-06-27 01:45:16,430 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2019.350.01/parosci.log (8930726 bytes) INFO 2025-06-27 01:45:17,188 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/dorado/missionlogs/2019.350.01/parosci.log: [ 29849 29850 29851 29852 29853 29854 29855 29856 29857 29858 29859 29860 29861 29862 29863 29864 29865 29866 29867 29868 29869 58386 58387 58388 58389 58390 58391 58392 58393 58394 58395 58396 58397 58398 58399 58400 58401 58402 58403 58404 58405 58406 58407 58408 58409 86833 86834 86835 86836 86837 86838 86839 86840 86841 86842 86843 86844 86845 86846 86847 86848 86849 86850 86851 86852 86853 86854 86855 86856 86857 86858 121764 121765 121766 121767 121768 121769 121770 121771 121772 121773 121774 121775 121776 121777 121778 121779 121780 121781 121782 121783 121784 121785 121786 121787 183084 183085 183086 183087 183088 183089 183090 183091 183092 183093 183094 183095 183096 183097] INFO 2025-06-27 01:45:17,223 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2019.350.01/tailCone.log (4486939 bytes) INFO 2025-06-27 01:45:17,768 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/dorado/missionlogs/2019.350.01/tailCone.log: [14990 14991 14992 14993 14994 14995 14996 14997 14998 14999 15000 29327 29328 29329 29330 29331 29332 29333 29334 29335 29336 29337 29338 43619 43620 43621 43622 43623 43624 43625 43626 43627 43628 43629 43630 43631 61169 61170 61171 61172 61173 61174 61175 61176 61177 61178 61179 61180 91977 91978 91979 91980 91981 91982 91983] INFO 2025-06-27 01:45:17,778 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2019.350.01/biolume.log (5223466 bytes) INFO 2025-06-27 01:45:18,291 logs2netcdfs.py write_variables():575 [1] Expanding original timeTag to time60Hz variable for raw data INFO 2025-06-27 01:45:18,542 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/dorado/missionlogs/2019.350.01/biolume.log: [ 2953 2954 5772 5773 8582 8583 12033 12034 18089] INFO 2025-06-27 01:45:18,567 logs2netcdfs.py download_process_logs():807 [1] Time to process: 6.02 seconds INFO 2025-06-27 01:45:18,567 process.py download_process():198 [1] Processing file /data/auv_data/dorado/missionlogs/2019.350.01/lopc.bin (15985215 bytes) INFO 2025-06-27 01:45:18,567 lopcToNetCDF.py main():2297 [1] Processing begun: Fri Jun 27 01:45:18 2025 INFO 2025-06-27 01:45:18,568 lopcToNetCDF.py constructTimestampList():1296 [1] parosci_nc = /data/auv_data/dorado/missionnetcdfs/2019.350.01/parosci.nc INFO 2025-06-27 01:45:18,568 lopcToNetCDF.py constructTimestampList():1297 [1] Using NetCDF4 to get start and end epoch seconds for this mission from this URL: INFO 2025-06-27 01:45:18,568 lopcToNetCDF.py constructTimestampList():1300 [1] /data/auv_data/dorado/missionnetcdfs/2019.350.01/parosci.nc INFO 2025-06-27 01:45:18,571 lopcToNetCDF.py constructTimestampList():1317 [1] From associated parosci.nc file: sensor_on_time = 1576524034.9, sensor_off_time = 1576542728.0 INFO 2025-06-27 01:45:18,571 lopcToNetCDF.py constructTimestampList():1322 [1] Duration is 18693 seconds. Expecting to read 37386 L frames from the lopc.bin file. INFO 2025-06-27 01:45:18,571 lopcToNetCDF.py constructTimestampList():1330 [1] recCount not passed in, assuming we'll have 37386 records from the lopc.bin file. INFO 2025-06-27 01:45:18,794 lopcToNetCDF.py main():2321 [1] Examined sibling parosci.nc file to find startTime = 2019-12-16 19:20:34 Z and endTime = 2019-12-17 00:32:08 Z with 37386 records expected to be read from lopc.bin INFO 2025-06-27 01:45:18,794 lopcToNetCDF.py unpackLOPCbin():723 [1] >>> Unpacking LOPC data from /data/auv_data/dorado/missionlogs/2019.350.01/lopc.bin INFO 2025-06-27 01:45:18,794 lopcToNetCDF.py unpackLOPCbin():724 [1] >>> Will write to NetCDF file /data/auv_data/dorado/missionnetcdfs/2019.350.01/lopc.nc INFO 2025-06-27 01:45:18,795 lopcToNetCDF.py openNetCDFFile():1861 [1] Will output NetCDF file to /data/auv_data/dorado/missionnetcdfs/2019.350.01/lopc.nc INFO 2025-06-27 01:45:18,795 lopcToNetCDF.py openNetCDFFile():1887 [1] missionName = 2019.350.01 INFO 2025-06-27 01:45:18,795 lopcToNetCDF.py openNetCDFFile():1910 [1] Writing bin axis for len(self.dataStructure['binSizeList']) = 994 WARNING 2025-06-27 01:45:18,798 lopcToNetCDF.py readCframeData():665 [1] Unable to parse a float from the string cstr[:70] = A075344 WARNING 2025-06-27 01:45:18,799 lopcToNetCDF.py readCframeData():665 [1] Unable to parse a float from the string cstr[:70] = INFO 2025-06-27 01:45:18,872 lopcToNetCDF.py unpackLOPCbin():951 [1] L Frames sample M Frames ShortLFrame LBeforeMEnd MBeforeLEnd UnknownFrame Garbled L INFO 2025-06-27 01:45:18,872 lopcToNetCDF.py unpackLOPCbin():969 [1] Count Count Count Error Error Error Error Error INFO 2025-06-27 01:45:18,872 lopcToNetCDF.py unpackLOPCbin():987 [1] -------- -------- -------- ----------- ----------- ----------- ----------- ------------ ERROR 2025-06-27 01:45:22,442 process.py download_process():223 [1] UnexpectedAreaOfCode: Encountered unexpected area of code - lopc.nc file is probably corrupt INFO 2025-06-27 01:45:22,443 process.py calibrate():227 [1] Calibration steps for 2019.350.01 INFO 2025-06-27 01:45:35,787 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-06-27 01:45:35,789 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-06-27 01:45:36,504 calibrate.py _nudge_pos():1806 [1] 104: 0.170 0.0003760 -0.0013714 3085 10.28 5.427 -24.721 2019-12-16T19:32:31.331268352 INFO 2025-06-27 01:45:38,679 calibrate.py _nudge_pos():1806 [1] 328: 0.150 -0.0010551 -0.0064337 14345 47.85 -3.272 -24.917 2019-12-16T20:24:05.325105408 INFO 2025-06-27 01:45:40,120 calibrate.py _nudge_pos():1806 [1] 474: 0.050 -0.0013612 -0.0034217 11714 39.08 -5.170 -16.224 2019-12-16T21:05:35.320726528 INFO 2025-06-27 01:45:42,870 calibrate.py _nudge_pos():1806 [1] 753: 0.010 -0.0002960 -0.0016673 9316 31.05 -1.415 -9.950 2019-12-16T21:41:17.523975680 INFO 2025-06-27 01:45:46,230 calibrate.py _nudge_pos():1806 [1] 1085: 0.150 0.0027087 -0.0137589 16801 56.01 7.183 -45.522 2019-12-16T22:42:49.461515520 INFO 2025-06-27 01:45:52,947 calibrate.py _nudge_pos():1806 [1] 1769: 0.030 -0.0000260 0.0000022 120 0.40 -9.733 1.017 2019-12-16T22:54:37.018827520 INFO 2025-06-27 01:46:08,758 calibrate.py _nudge_pos():1806 [1] 3387: 0.140 -0.0000090 -0.0000014 44 0.14 -9.344 -1.763 2019-12-16T23:21:45.017301760 INFO 2025-06-27 01:46:26,016 calibrate.py _nudge_pos():1806 [1] 5166: 0.030 -0.0000540 -0.0000179 45 0.15 -54.696 -22.618 2019-12-16T23:51:32.424856064 INFO 2025-06-27 01:46:29,594 calibrate.py _nudge_pos():1806 [1] 5532: 0.090 0.0001254 0.0001458 205 0.68 27.401 39.739 2019-12-16T23:58:18.417043712 INFO 2025-06-27 01:46:29,833 calibrate.py _nudge_pos():1806 [1] 5557: 0.070 -0.0000616 0.0000785 15 0.05 -196.202 311.603 2019-12-16T23:58:45.425193472 INFO 2025-06-27 01:46:34,625 calibrate.py _nudge_pos():1806 [1] 6038: 0.110 -0.0000250 -0.0000185 55 0.18 -20.665 -19.085 2019-12-17T00:06:56.421558016 INFO 2025-06-27 01:46:37,732 calibrate.py _nudge_pos():1806 [1] 6347: 0.140 -0.0000439 -0.0000249 30 0.10 -67.523 -47.638 2019-12-17T00:12:10.420047616 INFO 2025-06-27 01:46:49,712 calibrate.py _nudge_pos():1862 [1] 7503: - - - 0 0.00 - - INFO 2025-06-27 01:46:49,712 calibrate.py _nudge_pos():1868 [1] Points in final series = 92913 INFO 2025-06-27 01:47:02,866 calibrate.py _geometric_depth_correction():3423 [1] hs2: d_beg_time_diff: 1 seconds, d_end_time_diff: -1 seconds INFO 2025-06-27 01:47:08,200 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 23 seconds, d_end_time_diff: -1 seconds INFO 2025-06-27 01:47:08,800 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 23 seconds, d_end_time_diff: -1 seconds INFO 2025-06-27 01:47:08,802 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2019.350.01/ctd1.nc INFO 2025-06-27 01:47:08,804 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd1_salinity values to NaN INFO 2025-06-27 01:47:08,804 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-06-27 01:47:08,804 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1 INFO 2025-06-27 01:47:13,001 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 23 seconds, d_end_time_diff: -1 seconds INFO 2025-06-27 01:47:13,558 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 23 seconds, d_end_time_diff: -1 seconds INFO 2025-06-27 01:47:13,561 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2019.350.01/ctd2.nc INFO 2025-06-27 01:47:13,562 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd2_salinity values to NaN INFO 2025-06-27 01:47:13,562 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-06-27 01:47:13,562 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2 INFO 2025-06-27 01:47:14,274 calibrate.py _biolume_process():3128 [1] Checking for non-monotonic increasing time60hz INFO 2025-06-27 01:47:15,146 calibrate.py _biolume_process():3131 [1] Removing non-monotonic increasing time60hz at indices: [ 177180 177181 177182 177183 177184 177185 177186 177187 177188 177189 177190 177191 177192 177193 177194 177195 177196 177197 177198 177199 177200 177201 177202 177203 177204 177205 177206 177207 177208 177209 177210 177211 177212 177213 177214 177215 177216 177217 177218 177219 177220 177221 177222 177223 177224 177225 177226 177227 177228 177229 177230 177231 177232 177233 177234 177235 177236 177237 177238 177239 177240 177241 177242 177243 177244 177245 177246 177247 177248 177249 177250 177251 177252 177253 177254 177255 177256 177257 177258 177259 177260 177261 177262 177263 177264 177265 177266 177267 177268 177269 177270 177271 177272 177273 177274 177275 177276 177277 177278 177279 177280 177281 177282 177283 177284 177285 177286 177287 177288 177289 177290 177291 177292 177293 177294 177295 177296 177297 177298 177299 177300 177301 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346456 346457 346458 346459 346460 346461 346462 514920 514921 514922 514923 514924 514925 514926 514927 514928 514929 514930 514931 514932 514933 514934 514935 514936 514937 514938 514939 514940 514941 514942 514943 514944 514945 514946 514947 514948 514949 514950 514951 514952 514953 514954 514955 514956 514957 514958 514959 514960 514961 514962 514963 514964 514965 514966 514967 514968 514969 514970 514971 514972 514973 514974 514975 514976 514977 514978 514979 514980 514981 514982 514983 514984 514985 514986 514987 514988 514989 514990 514991 514992 514993 514994 514995 514996 514997 514998 514999 515000 515001 515002 515003 515004 515005 515006 515007 515008 515009 515010 515011 515012 515013 515014 515015 515016 515017 515018 515019 515020 515021 515022 515023 515024 515025 515026 515027 515028 515029 515030 515031 515032 515033 515034 515035 515036 515037 515038 515039 515040 515041 515042 515043 515044 515045 515046 515047 515048 515049 515050 515051 515052 515053 515054 515055 515056 515057 515058 515059 515060 515061 515062 515063 515064 515065 515066 515067 515068 515069 515070 515071 515072 515073 515074 721980 721981 721982 721983 721984 721985 721986 721987 721988 721989 721990 721991 721992 721993 721994 721995 721996 721997 721998 721999 722000 722001 722002 722003 722004 722005 722006 722007 722008 722009 722010 722011 722012 722013 722014 722015 722016 722017 722018 722019 722020 722021 722022 722023 722024 722025 722026 722027 722028 722029 722030 722031 722032 722033 722034 722035 722036 722037 722038 722039 722040 722041 722042 722043 722044 722045 722046 722047 722048 722049 722050 722051 722052 722053 722054 722055 722056 722057 722058 722059 722060 722061 722062 722063 722064 722065 722066 722067 722068 722069 722070 722071 722072 722073 722074 722075 722076 722077 722078 722079 722080 722081 722082 722083 722084 722085 722086 722087 722088 722089 722090 722091 722092 722093 722094 722095 722096 722097 722098 722099 722100 722101 722102 722103 722104 722105 722106 722107 722108 722109 722110 722111 722112 722113 722114 722115 722116 722117 722118 722119 722120 722121 722122 1085340 1085341 1085342 1085343 1085344 1085345 1085346 1085347 1085348 1085349 1085350 1085351 1085352 1085353 1085354 1085355 1085356 1085357 1085358 1085359 1085360 1085361 1085362 1085363 1085364 1085365 1085366 1085367 1085368 1085369 1085370 1085371 1085372 1085373 1085374 1085375 1085376 1085377 1085378 1085379 1085380 1085381 1085382 1085383 1085384 1085385 1085386 1085387 1085388 1085389 1085390 1085391 1085392 1085393 1085394 1085395 1085396 1085397 1085398 1085399 1085400 1085401 1085402 1085403 1085404 1085405 1085406 1085407 1085408 1085409 1085410 1085411 1085412 1085413 1085414 1085415 1085416 1085417 1085418 1085419 1085420 1085421 1085422] INFO 2025-06-27 01:47:15,313 calibrate.py _geometric_depth_correction():3423 [1] biolume: d_beg_time_diff: -5 seconds, d_end_time_diff: -1 seconds ERROR 2025-06-27 01:47:33,240 calibrate.py process_logs():3542 [1] Error processing lopc: lopc has no time coordinate - likely an incomplete lopc.nc file in missionlogs/2019.350.01 ERROR 2025-06-27 01:47:33,241 calibrate.py process_logs():3542 [1] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2019.350.01 INFO 2025-06-27 01:47:34,838 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2019.350.01/dorado_2019.350.01_cal.nc INFO 2025-06-27 01:47:43,151 calibrate.py write_netcdf():3512 [1] Data variables written: biolume_avg_biolume, biolume_depth, biolume_flow, biolume_raw, biolume_time, biolume_time60hz, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_salinity_onboard, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_salinity_onboard, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, hs2_bbp420, hs2_bbp700, hs2_depth, hs2_fl700, hs2_time, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, tailcone_propRpm, tailcone_time, time INFO 2025-06-27 01:47:43,158 process.py align():251 [1] Alignment steps for 2019.350.01 INFO 2025-06-27 01:47:43,200 align.py process_cal():139 [1] Processing dorado_2019.350.01_cal.nc from /data/auv_data/dorado/missionnetcdfs/2019.350.01 INFO 2025-06-27 01:47:43,229 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-27 01:47:43,233 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-06-27 01:47:43,299 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-27 01:47:43,304 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-06-27 01:47:43,368 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-27 01:47:43,374 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-06-27 01:47:43,412 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-06-27 01:47:43,412 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-06-27 01:47:43,437 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-27 01:47:43,441 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-06-27 01:47:43,504 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2019.350.01_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-27 01:47:43,509 align.py process_cal():249 [1] hs2_bbp420: instrument_sample_rate_hz = 4.00 INFO 2025-06-27 01:47:43,566 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2019.350.01_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-27 01:47:43,570 align.py process_cal():249 [1] hs2_bbp700: instrument_sample_rate_hz = 4.00 INFO 2025-06-27 01:47:43,628 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2019.350.01_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-27 01:47:43,632 align.py process_cal():249 [1] hs2_fl700: instrument_sample_rate_hz = 4.00 INFO 2025-06-27 01:47:43,688 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2019.350.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-27 01:47:43,692 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-27 01:47:43,752 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2019.350.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-27 01:47:43,758 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-27 01:47:43,816 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2019.350.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-27 01:47:43,820 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-27 01:47:43,878 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2019.350.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-27 01:47:43,883 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-27 01:47:43,941 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2019.350.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-27 01:47:43,946 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-27 01:47:44,003 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2019.350.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-27 01:47:44,008 align.py process_cal():249 [1] ctd1_salinity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-27 01:47:44,063 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2019.350.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-27 01:47:44,068 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 4.00 INFO 2025-06-27 01:47:44,130 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2019.350.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-27 01:47:44,135 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 4.00 INFO 2025-06-27 01:47:44,190 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2019.350.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-27 01:47:44,195 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 4.00 INFO 2025-06-27 01:47:44,253 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2019.350.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-27 01:47:44,258 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 4.00 INFO 2025-06-27 01:47:44,315 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2019.350.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-27 01:47:44,319 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-27 01:47:44,378 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2019.350.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-27 01:47:44,382 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-27 01:47:44,439 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2019.350.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-27 01:47:44,443 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-27 01:47:44,501 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2019.350.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-27 01:47:44,505 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-27 01:47:44,562 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2019.350.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-27 01:47:44,566 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-27 01:47:44,623 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2019.350.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-27 01:47:44,627 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-27 01:47:44,685 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2019.350.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-27 01:47:44,690 align.py process_cal():249 [1] ctd2_salinity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-27 01:47:44,746 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2019.350.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-27 01:47:44,751 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 4.00 INFO 2025-06-27 01:47:44,807 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2019.350.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-27 01:47:44,811 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-27 01:47:44,881 align.py process_cal():249 [1] isus_nitrate: instrument_sample_rate_hz = 0.78 INFO 2025-06-27 01:47:44,930 align.py process_cal():249 [1] isus_temp: instrument_sample_rate_hz = 0.78 INFO 2025-06-27 01:47:44,981 align.py process_cal():249 [1] isus_quality: instrument_sample_rate_hz = 0.78 INFO 2025-06-27 01:47:45,035 align.py process_cal():249 [1] biolume_flow: instrument_sample_rate_hz = 0.98 INFO 2025-06-27 01:47:45,088 align.py process_cal():249 [1] biolume_avg_biolume: instrument_sample_rate_hz = 0.98 INFO 2025-06-27 01:47:45,169 align.py process_cal():249 [1] biolume_raw: instrument_sample_rate_hz = 58.95 INFO 2025-06-27 01:47:45,644 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 5.00 INFO 2025-06-27 01:47:45,691 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2019.350.01/dorado_2019.350.01_align.nc INFO 2025-06-27 01:47:45,837 align.py write_netcdf():342 [1] Data variables written: biolume_avg_biolume, biolume_depth, biolume_flow, biolume_latitude, biolume_longitude, biolume_raw, biolume_time, biolume_time60hz, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_salinity_onboard, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_salinity_onboard, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, hs2_bbp420, hs2_bbp700, hs2_depth, hs2_fl700, hs2_latitude, hs2_longitude, hs2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-06-27 01:47:45,841 process.py resample():273 [1] Resampling steps for 2019.350.01 INFO 2025-06-27 01:47:45,842 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-06-27 01:47:45,878 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2019.350.01/dorado_2019.350.01_align.nc mission netCDF file INFO 2025-06-27 01:47:45,885 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2019.350.01/dorado_2019.350.01_align.nc mission netCDF file INFO 2025-06-27 01:47:45,886 resample.py get_mission_start_end():1145 [1] navigation: 2019-12-16T19:21:11.507839232 to 2019-12-17T00:32:07.990065920 (0 days 00:00:00 before mission_end) INFO 2025-06-27 01:47:45,888 resample.py get_mission_start_end():1145 [1] hs2 : 2019-12-16T19:20:36.360247040 to 2019-12-17T00:32:07.930070016 (0 days 00:00:00.059995904 before mission_end) INFO 2025-06-27 01:47:45,890 resample.py get_mission_start_end():1145 [1] ctd1 : 2019-12-16T19:20:58.888703744 to 2019-12-17T00:32:07.990065920 (0 days 00:00:00 before mission_end) INFO 2025-06-27 01:47:45,891 resample.py get_mission_start_end():1145 [1] ctd2 : 2019-12-16T19:20:58.828707840 to 2019-12-17T00:32:07.870074112 (0 days 00:00:00.119991808 before mission_end) INFO 2025-06-27 01:47:45,893 resample.py get_mission_start_end():1145 [1] isus : 2019-12-16T19:21:46.965410304 to 2019-12-17T00:32:06.990134272 (0 days 00:00:00.999931648 before mission_end) INFO 2025-06-27 01:47:45,894 resample.py get_mission_start_end():1145 [1] biolume : 2019-12-16T19:20:30.420619776 to 2019-12-17T00:32:06.520132352 (0 days 00:00:01.469933568 before mission_end) INFO 2025-06-27 01:47:45,896 resample.py get_mission_start_end():1145 [1] tailcone : 2019-12-16T19:20:36.300251136 to 2019-12-17T00:32:07.950068480 (0 days 00:00:00.039997440 before mission_end) INFO 2025-06-27 01:47:45,896 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2019.350.01/dorado_2019.350.01_align.nc mission netCDF file INFO 2025-06-27 01:47:45,897 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-06-27 01:47:46,107 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-06-27 01:47:46,145 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-06-27 01:47:46,182 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-06-27 01:47:46,218 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-06-27 01:47:46,252 resample.py resample_variable():1031 [1] Resampling hs2_bbp420 with frequency 1S following 3 point median filter INFO 2025-06-27 01:47:46,284 resample.py resample_variable():1031 [1] Resampling hs2_bbp700 with frequency 1S following 3 point median filter INFO 2025-06-27 01:47:46,316 resample.py resample_variable():1031 [1] Resampling hs2_fl700 with frequency 1S following 3 point median filter INFO 2025-06-27 01:47:46,347 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-06-27 01:47:46,377 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-06-27 01:47:46,406 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-06-27 01:47:46,435 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-27 01:47:46,465 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-27 01:47:46,495 resample.py resample_variable():1031 [1] Resampling ctd1_salinity_onboard with frequency 1S following 3 point median filter INFO 2025-06-27 01:47:46,524 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-06-27 01:47:46,554 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-06-27 01:47:46,583 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-06-27 01:47:46,613 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-06-27 01:47:46,646 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-06-27 01:47:46,678 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-06-27 01:47:46,708 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-06-27 01:47:46,739 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-27 01:47:46,770 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-27 01:47:46,800 resample.py resample_variable():1031 [1] Resampling ctd2_salinity_onboard with frequency 1S following 3 point median filter INFO 2025-06-27 01:47:46,830 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-06-27 01:47:46,846 resample.py resample_variable():1031 [1] Resampling isus_nitrate with frequency 1S following 3 point median filter INFO 2025-06-27 01:47:46,861 resample.py resample_variable():1031 [1] Resampling isus_temp with frequency 1S following 3 point median filter INFO 2025-06-27 01:47:46,875 resample.py resample_variable():1031 [1] Resampling isus_quality with frequency 1S following 3 point median filter INFO 2025-06-27 01:47:46,888 resample.py resample_variable():1031 [1] Resampling biolume_flow with frequency 1S following 3 point median filter INFO 2025-06-27 01:47:46,901 resample.py resample_variable():1031 [1] Resampling biolume_avg_biolume with frequency 1S following 3 point median filter INFO 2025-06-27 01:47:46,906 resample.py set_proxy_parameters():520 [1] Setting biolume proxy parameters for period4 INFO 2025-06-27 01:47:46,906 resample.py add_biolume_proxies():549 [1] Adding biolume proxy variables computed from biolume_raw INFO 2025-06-27 01:47:47,535 resample.py add_biolume_proxies():595 [1] Using flash_threshold = 1.0000e+11 INFO 2025-06-27 01:47:47,659 resample.py add_biolume_proxies():633 [1] Zero flow values found: 1 of 18697 - replaced with 350 ml/s INFO 2025-06-27 01:47:47,660 resample.py add_biolume_proxies():638 [1] Computing flashes per liter: nbflash_high, nbflash_low INFO 2025-06-27 01:47:47,725 resample.py add_biolume_proxies():666 [1] Saving flash intensity: biolume_intflash - the upper bound of the background envelope INFO 2025-06-27 01:47:47,756 resample.py add_biolume_proxies():683 [1] Saving Background bioluminescence (dinoflagellates proxy) INFO 2025-06-27 01:47:47,781 resample.py select_nighttime_bl_raw():432 [1] No sunset or sunrise found during this mission. INFO 2025-06-27 01:47:47,781 resample.py add_biolume_proxies():694 [1] No nighttime_bl_raw data to compute adinos, diatoms, hdinos proxies INFO 2025-06-27 01:47:47,821 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-06-27 01:47:48,051 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2019.350.01/dorado_2019.350.01_1S.nc INFO 2025-06-27 01:47:50,168 create_products.py _get_best_ctd():375 [1] Best CTD is ctd1 INFO 2025-06-27 01:48:01,266 create_products.py gulper_odv():522 [1] Wrote 10 Gulper data lines to /data/auv_data/dorado/missionodvs/2019.350.01/dorado_2019.350.01_1S_Gulper.txt INFO 2025-06-27 01:48:01,266 process.py archive():337 [1] Archiving steps for 2019.350.01 INFO 2025-06-27 01:48:01,266 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2019.350.01/dorado_2019.350.01, BASE_PATH = /data/auv_data INFO 2025-06-27 01:48:01,268 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2019.350.01/dorado_2019.350.01 files to /Volumes/AUVCTD/surveys/2019/netcdf INFO 2025-06-27 01:48:01,269 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2019/netcdf/dorado_2019.350.01_1S.nc INFO 2025-06-27 01:48:01,289 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2019.350.01/dorado_2019.350.01_1S.nc /Volumes/AUVCTD/surveys/2019/netcdf done. INFO 2025-06-27 01:48:01,289 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2019/netcdf/dorado_2019.350.01_cal.nc INFO 2025-06-27 01:48:01,424 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2019.350.01/dorado_2019.350.01_cal.nc /Volumes/AUVCTD/surveys/2019/netcdf done. INFO 2025-06-27 01:48:01,425 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2019/netcdf/dorado_2019.350.01_align.nc INFO 2025-06-27 01:48:01,592 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2019.350.01/dorado_2019.350.01_align.nc /Volumes/AUVCTD/surveys/2019/netcdf done. INFO 2025-06-27 01:48:01,617 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2019.350.01/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2019/2019350/2019.350.01 done. INFO 2025-06-27 01:48:01,640 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2019.350.01/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2019/2019350/2019.350.01 done. INFO 2025-06-27 01:48:01,648 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2019.350.01/gps.nc /Volumes/AUVCTD/missionnetcdfs/2019/2019350/2019.350.01 done. INFO 2025-06-27 01:48:01,668 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2019.350.01/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2019/2019350/2019.350.01 done. INFO 2025-06-27 01:48:01,750 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2019.350.01/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2019/2019350/2019.350.01 done. INFO 2025-06-27 01:48:01,760 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2019.350.01/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2019/2019350/2019.350.01 done. INFO 2025-06-27 01:48:01,789 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2019.350.01/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2019/2019350/2019.350.01 done. INFO 2025-06-27 01:48:01,813 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2019.350.01/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2019/2019350/2019.350.01 done. INFO 2025-06-27 01:48:01,871 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2019.350.01/biolume.nc /Volumes/AUVCTD/missionnetcdfs/2019/2019350/2019.350.01 done. INFO 2025-06-27 01:48:01,892 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2019.350.01/lopc.nc /Volumes/AUVCTD/missionnetcdfs/2019/2019350/2019.350.01 done. INFO 2025-06-27 01:48:01,893 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-06-27 01:48:01,896 archive.py copy_to_AUVTCD():133 [1] Removing /Volumes/AUVCTD/surveys/2019/odv/dorado_2019.350.01_1S_Gulper.txt INFO 2025-06-27 01:48:01,912 archive.py copy_to_AUVTCD():136 [1] copyfile /data/auv_data/dorado/missionodvs/2019.350.01/dorado_2019.350.01_1S_Gulper.txt /Volumes/AUVCTD/surveys/2019/odv done. INFO 2025-06-27 01:48:01,913 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2019.350.01/dorado_2019.350.01_processing.log /Volumes/AUVCTD/surveys/2019/netcdf