INFO 2025-06-27 00:18:52,402 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2015 --end_year 2025 --num_cores 1 -v --noinput --clobber INFO 2025-06-27 00:18:52,402 process.py process_mission():434 [1] dorado_info[mission]["comment"] = MBTS mission - Overnight diamond in Monterey Bay QC note: Best CTD is ctd2 - ctdToUse = ctd2 INFO 2025-06-27 00:18:52,402 process.py process_mission():449 [1] Processing Monterey Bay Diamond mission 2019.029.00 by user docker_user on host 355841a7028c INFO 2025-06-27 00:18:52,402 process.py download_process():165 [1] Download and processing steps for 2019.029.00 INFO 2025-06-27 00:18:52,403 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2019/2019029/2019.029.00 INFO 2025-06-27 00:18:52,403 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2019/2019029/2019.029.00 to /data/auv_data/dorado/missionlogs/2019.029.00 INFO 2025-06-27 00:18:58,298 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2019.029.00 INFO 2025-06-27 00:18:58,299 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2019.029.00/ctdDriver.log (30457830 bytes) INFO 2025-06-27 00:19:00,392 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/dorado/missionlogs/2019.029.00/ctdDriver.log: [ 15548 15549 15550 15551 15552 15553 15554 15555 15556 19847 19848 19849 31191 31192 31193 31194 31195 31196 31197 31198 42783 42784 42785 42786 42787 42788 42789 42790 53219 53220 53221 53222 53223 53224 53225 53226 64732 64733 64734 64735 64736 64737 64738 64739 76116 76117 76118 76119 76120 76121 76122 76123 86880 86881 86882 86883 86884 86885 86886 86887 97776 97777 97778 97779 97780 97781 97782 97783 108137 108138 108139 108140 108141 108142 108143 108144 119169 119170 119171 119172 119173 119174 119175 119176 130769 130770 130771 130772 130773 130774 130775 130776 142301 142302 142303 142304 142305 142306 142307 142308 153286 153287 153288 153289 153290 153291 153292 153293 165446 165447 165448 165449 165450 165451 165452 165453 176426 176427 176428 176429 176430 176431 176432 176433 187426 187427 187428 187429 187430 187431 187432 187433 198475 198476 198477 198478 198479 198480 198481 198482 210039 210040 210041 210042 210043 210044 210045 210046 220883 220884 220885 220886 220887 220888 220889 220890 236900 236901 236902 236903 236904 236905 236906 236907 248240 248241 248242 248243 248244 248245 248246 248247 259836 259837 259838 259839 259840 259841 259842 259843 271392 271393 271394 271395 271396 271397 271398 271399 282965 282966 282967 282968 282969 282970 282971 282972 289054 289055 289056 289057 289058 289175] INFO 2025-06-27 00:19:00,480 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2019.029.00/ctdDriver2.log (30464159 bytes) INFO 2025-06-27 00:19:02,583 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/dorado/missionlogs/2019.029.00/ctdDriver2.log: [ 15613 15614 15615 15616 15617 15618 15619 15620 15621 19912 19913 19914 31257 31258 31259 31260 31261 31262 31263 31264 42849 42850 42851 42852 42853 42854 42855 42856 53285 53286 53287 53288 53289 53290 53291 53292 64798 64799 64800 64801 64802 64803 64804 64805 76182 76183 76184 76185 76186 76187 76188 76189 86946 86947 86948 86949 86950 86951 86952 86953 97842 97843 97844 97845 97846 97847 97848 97849 108203 108204 108205 108206 108207 108208 108209 108210 119235 119236 119237 119238 119239 119240 119241 119242 130835 130836 130837 130838 130839 130840 130841 130842 142367 142368 142369 142370 142371 142372 142373 142374 153352 153353 153354 153355 153356 153357 153358 153359 165512 165513 165514 165515 165516 165517 165518 165519 176492 176493 176494 176495 176496 176497 176498 176499 187492 187493 187494 187495 187496 187497 187498 187499 198541 198542 198543 198544 198545 198546 198547 198548 210105 210106 210107 210108 210109 210110 210111 210112 220949 220950 220951 220952 220953 220954 220955 220956 236966 236967 236968 236969 236970 236971 236972 236973 248306 248307 248308 248309 248310 248311 248312 248313 259902 259903 259904 259905 259906 259907 259908 259909 271458 271459 271460 271461 271462 271463 271464 271465 283031 283032 283033 283034 283035 283036 283037 283038 289120 289121 289122 289123 289124 289241] INFO 2025-06-27 00:19:02,683 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2019.029.00/gps.log (1064228 bytes) INFO 2025-06-27 00:19:02,798 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/dorado/missionlogs/2019.029.00/gps.log: [ 558 559 7718] INFO 2025-06-27 00:19:02,800 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2019.029.00/hydroscatlog.log (26651626 bytes) INFO 2025-06-27 00:19:05,473 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/dorado/missionlogs/2019.029.00/hydroscatlog.log: [ 15690 15691 15692 15693 15694 15695 15696 15697 15698 19987 19988 19989 31327 31328 31329 31330 31331 31332 31333 31334 42912 42913 42914 42915 42916 42917 42918 42919 53343 53344 53345 53346 53347 53348 53349 53350 64849 64850 64851 64852 64853 64854 64855 64856 76229 76230 76231 76232 76233 76234 76235 76236 86987 86988 86989 86990 86991 86992 86993 86994 97878 97879 97880 97881 97882 97883 97884 97885 108235 108236 108237 108238 108239 108240 108241 108242 119261 119262 119263 119264 119265 119266 119267 119268 130857 130858 130859 130860 130861 130862 130863 130864 142384 142385 142386 142387 142388 142389 142390 142391 153365 153366 153367 153368 153369 153370 153371 153372 165522 165523 165524 165525 165526 165527 165528 165529 176498 176499 176500 176501 176502 176503 176504 176505 187492 187493 187494 187495 187496 187497 187498 187499 198537 198538 198539 198540 198541 198542 198543 198544 210096 210097 210098 210099 210100 210101 210102 210103 220939 220940 220941 220942 220943 220944 220945 220946 236949 236950 236951 236952 236953 236954 236955 236956 248285 248286 248287 248288 248289 248290 248291 248292 259876 259877 259878 259879 259880 259881 259882 259883 271426 271427 271428 271429 271430 271431 271432 271433 282991 282992 282993 282994 282995 282996 282997 282998 289076 289077 289078 289079 289080 289197] INFO 2025-06-27 00:19:05,562 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2019.029.00/navigation.log (117401214 bytes) INFO 2025-06-27 00:19:13,723 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/dorado/missionlogs/2019.029.00/navigation.log: [ 19456 19457 19458 19459 19460 19461 19462 19463 19464 19465 19466 19467 24830 24831 24832 24833 39011 39012 39013 39014 39015 39016 39017 39018 39019 39020 39021 53502 53503 53504 53505 53506 53507 53508 53509 53510 53511 66548 66549 66550 66551 66552 66553 66554 66555 66556 66557 80939 80940 80941 80942 80943 80944 80945 80946 80947 80948 95170 95171 95172 95173 95174 95175 95176 95177 95178 95179 108626 108627 108628 108629 108630 108631 108632 108633 108634 108635 122247 122248 122249 122250 122251 122252 122253 122254 122255 122256 135198 135199 135200 135201 135202 135203 135204 135205 135206 135207 148989 148990 148991 148992 148993 148994 148995 148996 148997 148998 163490 163491 163492 163493 163494 163495 163496 163497 163498 163499 177906 177907 177908 177909 177910 177911 177912 177913 177914 177915 191637 191638 191639 191640 191641 191642 191643 191644 191645 191646 206838 206839 206840 206841 206842 206843 206844 206845 206846 206847 220564 220565 220566 220567 220568 220569 220570 220571 220572 220573 234315 234316 234317 234318 234319 234320 234321 234322 234323 234324 248126 248127 248128 248129 248130 248131 248132 248133 248134 248135 248136 262582 262583 262584 262585 262586 262587 262588 262589 262590 262591 276138 276139 276140 276141 276142 276143 276144 276145 276146 276147 296159 296160 296161 296162 296163 296164 296165 296166 296167 296168 310335 310336 310337 310338 310339 310340 310341 310342 310343 310344 310345 324831 324832 324833 324834 324835 324836 324837 324838 324839 324840 324841 339277 339278 339279 339280 339281 339282 339283 339284 339285 339286 339287 353743 353744 353745 353746 353747 353748 353749 353750 353751 353752 361355 361356 361357 361358 361359 361360 361506] INFO 2025-06-27 00:19:14,198 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2019.029.00/isuslog.log (1981237 bytes) INFO 2025-06-27 00:19:14,384 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/dorado/missionlogs/2019.029.00/isuslog.log: [ 1 2 3 3012 6066 8331 10368 12615 14837 19064 21087 23244 25510 27762 29906 32280 34424 36573 38728 40987 43102 46228 48441 50704 52959 55216 56404] INFO 2025-06-27 00:19:14,391 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2019.029.00/parosci.log (37910198 bytes) INFO 2025-06-27 00:19:17,503 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/dorado/missionlogs/2019.029.00/parosci.log: [ 39072 39073 39074 39075 39076 39077 39078 39079 39080 39081 39082 39083 39084 39085 39086 39087 39088 39089 39090 39091 39092 39093 39094 39095 49769 49770 49771 49772 49773 49774 49775 49776 77996 77997 77998 77999 78000 78001 78002 78003 78004 78005 78006 78007 78008 78009 78010 78011 78012 78013 78014 78015 78016 106839 106840 106841 106842 106843 106844 106845 106846 106847 106848 106849 106850 106851 106852 106853 106854 106855 106856 106857 106858 106859 124247 132806 132807 132808 132809 132810 132811 132812 132813 132814 132815 132816 132817 132818 132819 132820 132821 132822 132823 132824 132825 132826 161451 161452 161453 161454 161455 161456 161457 161458 161459 161460 161461 161462 161463 161464 161465 161466 161467 161468 161469 161470 161471 189777 189778 189779 189780 189781 189782 189783 189784 189785 189786 189787 189788 189789 189790 189791 189792 189793 189794 189795 189796 189797 216560 216561 216562 216563 216564 216565 216566 216567 216568 216569 216570 216571 216572 216573 216574 216575 216576 216577 216578 216579 216580 243672 243673 243674 243675 243676 243677 243678 243679 243680 243681 243682 243683 243684 243685 243686 243687 243688 243689 243690 243691 243692 269450 269451 269452 269453 269454 269455 269456 269457 269458 269459 269460 269461 269462 269463 269464 269465 269466 269467 269468 269469 269470 296901 296902 296903 296904 296905 296906 296907 296908 296909 296910 296911 296912 296913 296914 296915 296916 296917 296918 296919 296920 296921 325764 325765 325766 325767 325768 325769 325770 325771 325772 325773 325774 325775 325776 325777 325778 325779 325780 325781 325782 325783 325784 354458 354459 354460 354461 354462 354463 354464 354465 354466 354467 354468 354469 354470 354471 354472 354473 354474 354475 354476 354477 354478 381789 381790 381791 381792 381793 381794 381795 381796 381797 381798 381799 381800 381801 381802 381803 381804 381805 381806 381807 381808 381809 412046 412047 412048 412049 412050 412051 412052 412053 412054 412055 412056 412057 412058 412059 412060 412061 412062 412063 412064 412065 412066 439366 439367 439368 439369 439370 439371 439372 439373 439374 439375 439376 439377 439378 439379 439380 439381 439382 439383 439384 439385 439386 466737 466738 466739 466740 466741 466742 466743 466744 466745 466746 466747 466748 466749 466750 466751 466752 466753 466754 466755 466756 466757 494227 494228 494229 494230 494231 494232 494233 494234 494235 494236 494237 494238 494239 494240 494241 494242 494243 494244 494245 494246 494247 523001 523002 523003 523004 523005 523006 523007 523008 523009 523010 523011 523012 523013 523014 523015 523016 523017 523018 523019 523020 523021 549983 549984 549985 549986 549987 549988 549989 549990 549991 549992 549993 549994 549995 549996 549997 549998 549999 550000 550001 550002 550003 589835 589836 589837 589838 589839 589840 589841 589842 589843 589844 589845 589846 589847 589848 589849 589850 589851 589852 589853 589854 589855 618052 618053 618054 618055 618056 618057 618058 618059 618060 618061 618062 618063 618064 618065 618066 618067 618068 618069 618070 618071 618072 646905 646906 646907 646908 646909 646910 646911 646912 646913 646914 646915 646916 646917 646918 646919 646920 646921 646922 646923 646924 646925 675659 675660 675661 675662 675663 675664 675665 675666 675667 675668 675669 675670 675671 675672 675673 675674 675675 675676 675677 675678 675679 704453 704454 704455 704456 704457 704458 704459 704460 704461 704462 704463 704464 704465 704466 704467 704468 704469 704470 704471 704472 704473 719604 719605 719606 719607 719608 719609 719610 719611 719612 719613 719614 719615 719616 719904 719905 719906] INFO 2025-06-27 00:19:17,609 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2019.029.00/tailCone.log (19046347 bytes) INFO 2025-06-27 00:19:19,932 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/dorado/missionlogs/2019.029.00/tailCone.log: [ 19627 19628 19629 19630 19631 19632 19633 19634 19635 19636 19637 19638 25001 25002 25003 25004 39182 39183 39184 39185 39186 39187 39188 39189 39190 39191 53673 53674 53675 53676 53677 53678 53679 53680 53681 53682 66719 66720 66721 66722 66723 66724 66725 66726 66727 66728 81110 81111 81112 81113 81114 81115 81116 81117 81118 81119 95341 95342 95343 95344 95345 95346 95347 95348 95349 95350 108797 108798 108799 108800 108801 108802 108803 108804 108805 108806 122418 122419 122420 122421 122422 122423 122424 122425 122426 122427 135369 135370 135371 135372 135373 135374 135375 135376 135377 135378 149160 149161 149162 149163 149164 149165 149166 149167 149168 149169 149170 163661 163662 163663 163664 163665 163666 163667 163668 163669 163670 163671 178077 178078 178079 178080 178081 178082 178083 178084 178085 178086 191808 191809 191810 191811 191812 191813 191814 191815 191816 191817 207009 207010 207011 207012 207013 207014 207015 207016 207017 207018 220735 220736 220737 220738 220739 220740 220741 220742 220743 220744 234486 234487 234488 234489 234490 234491 234492 234493 234494 234495 234496 248297 248298 248299 248300 248301 248302 248303 248304 248305 248306 262753 262754 262755 262756 262757 262758 262759 262760 262761 262762 262763 276309 276310 276311 276312 276313 276314 276315 276316 276317 276318 296330 296331 296332 296333 296334 296335 296336 296337 296338 296339 310506 310507 310508 310509 310510 310511 310512 310513 310514 310515 325002 325003 325004 325005 325006 325007 325008 325009 325010 325011 325012 339448 339449 339450 339451 339452 339453 339454 339455 339456 339457 339458 353914 353915 353916 353917 353918 353919 353920 353921 353922 353923 361526 361527 361528 361529 361530 361531 361677] INFO 2025-06-27 00:19:19,974 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2019.029.00/biolume.log (22160658 bytes) INFO 2025-06-27 00:19:22,181 logs2netcdfs.py write_variables():575 [1] Expanding original timeTag to time60Hz variable for raw data INFO 2025-06-27 00:19:23,182 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/dorado/missionlogs/2019.029.00/biolume.log: [ 3864 3865 7709 7710 10558 10559 13123 13124 15952 15953 18750 18751 21396 21397 24074 24075 26621 26622 29332 29333 32183 32184 35018 35019 37718 37719 40706 40707 43405 43406 46109 46110 48824 48825 51666 51667 54331 54332 58268 58269 61056 61057 63906 63907 66746 66747 69590 69591 71087] INFO 2025-06-27 00:19:23,267 logs2netcdfs.py download_process_logs():807 [1] Time to process: 24.97 seconds INFO 2025-06-27 00:19:23,267 process.py download_process():198 [1] Processing file /data/auv_data/dorado/missionlogs/2019.029.00/lopc.bin (56920151 bytes) INFO 2025-06-27 00:19:23,267 lopcToNetCDF.py main():2297 [1] Processing begun: Fri Jun 27 00:19:23 2025 INFO 2025-06-27 00:19:23,267 lopcToNetCDF.py constructTimestampList():1296 [1] parosci_nc = /data/auv_data/dorado/missionnetcdfs/2019.029.00/parosci.nc INFO 2025-06-27 00:19:23,268 lopcToNetCDF.py constructTimestampList():1297 [1] Using NetCDF4 to get start and end epoch seconds for this mission from this URL: INFO 2025-06-27 00:19:23,268 lopcToNetCDF.py constructTimestampList():1300 [1] /data/auv_data/dorado/missionnetcdfs/2019.029.00/parosci.nc INFO 2025-06-27 00:19:23,271 lopcToNetCDF.py constructTimestampList():1317 [1] From associated parosci.nc file: sensor_on_time = 1548781800.5, sensor_off_time = 1548861153.1 INFO 2025-06-27 00:19:23,271 lopcToNetCDF.py constructTimestampList():1322 [1] Duration is 79352 seconds. Expecting to read 158704 L frames from the lopc.bin file. INFO 2025-06-27 00:19:23,271 lopcToNetCDF.py constructTimestampList():1330 [1] recCount not passed in, assuming we'll have 158704 records from the lopc.bin file. INFO 2025-06-27 00:19:24,217 lopcToNetCDF.py main():2321 [1] Examined sibling parosci.nc file to find startTime = 2019-01-29 17:10:00 Z and endTime = 2019-01-30 15:12:33 Z with 158704 records expected to be read from lopc.bin INFO 2025-06-27 00:19:24,217 lopcToNetCDF.py unpackLOPCbin():723 [1] >>> Unpacking LOPC data from /data/auv_data/dorado/missionlogs/2019.029.00/lopc.bin INFO 2025-06-27 00:19:24,217 lopcToNetCDF.py unpackLOPCbin():724 [1] >>> Will write to NetCDF file /data/auv_data/dorado/missionnetcdfs/2019.029.00/lopc.nc INFO 2025-06-27 00:19:24,219 lopcToNetCDF.py openNetCDFFile():1861 [1] Will output NetCDF file to /data/auv_data/dorado/missionnetcdfs/2019.029.00/lopc.nc INFO 2025-06-27 00:19:24,219 lopcToNetCDF.py openNetCDFFile():1887 [1] missionName = 2019.029.00 INFO 2025-06-27 00:19:24,219 lopcToNetCDF.py openNetCDFFile():1910 [1] Writing bin axis for len(self.dataStructure['binSizeList']) = 994 INFO 2025-06-27 00:19:24,255 lopcToNetCDF.py unpackLOPCbin():951 [1] L Frames sample M Frames ShortLFrame LBeforeMEnd MBeforeLEnd UnknownFrame Garbled L INFO 2025-06-27 00:19:24,255 lopcToNetCDF.py unpackLOPCbin():969 [1] Count Count Count Error Error Error Error Error INFO 2025-06-27 00:19:24,255 lopcToNetCDF.py unpackLOPCbin():987 [1] -------- -------- -------- ----------- ----------- ----------- ----------- ------------ INFO 2025-06-27 00:19:27,878 lopcToNetCDF.py unpackLOPCbin():1013 [1] 10000 10000 7950 0 0 0 0 0 3.7 seconds, last L Frame: 158704 INFO 2025-06-27 00:19:32,077 lopcToNetCDF.py unpackLOPCbin():1013 [1] 20000 20000 17833 0 0 0 0 0 4.2 seconds, last L Frame: 158704 INFO 2025-06-27 00:19:36,654 lopcToNetCDF.py unpackLOPCbin():1013 [1] 30000 30000 28537 0 0 0 0 0 4.6 seconds, last L Frame: 158704 INFO 2025-06-27 00:19:40,637 lopcToNetCDF.py unpackLOPCbin():1013 [1] 40000 40000 37732 0 0 0 0 0 4.0 seconds, last L Frame: 158704 INFO 2025-06-27 00:19:44,907 lopcToNetCDF.py unpackLOPCbin():1013 [1] 50000 50000 46981 0 0 0 0 0 4.3 seconds, last L Frame: 158704 INFO 2025-06-27 00:19:48,362 lopcToNetCDF.py unpackLOPCbin():1013 [1] 60000 60000 53747 0 0 0 0 0 3.5 seconds, last L Frame: 158704 INFO 2025-06-27 00:19:52,260 lopcToNetCDF.py unpackLOPCbin():1013 [1] 70000 4464 62331 0 0 0 0 0 3.9 seconds, last L Frame: 158704 INFO 2025-06-27 00:19:56,202 lopcToNetCDF.py unpackLOPCbin():1013 [1] 80000 14464 71145 0 0 0 0 0 3.9 seconds, last L Frame: 158704 INFO 2025-06-27 00:20:00,126 lopcToNetCDF.py unpackLOPCbin():1013 [1] 90000 24464 78922 0 0 0 0 0 3.9 seconds, last L Frame: 158704 INFO 2025-06-27 00:20:04,793 lopcToNetCDF.py unpackLOPCbin():1013 [1] 100000 34464 89983 0 0 0 0 0 4.7 seconds, last L Frame: 158704 INFO 2025-06-27 00:20:11,095 lopcToNetCDF.py unpackLOPCbin():1013 [1] 110000 44464 105561 0 0 0 0 0 6.3 seconds, last L Frame: 158704 INFO 2025-06-27 00:20:17,202 lopcToNetCDF.py unpackLOPCbin():1013 [1] 120000 54464 120544 0 0 0 0 0 6.1 seconds, last L Frame: 158704 INFO 2025-06-27 00:20:21,429 lopcToNetCDF.py unpackLOPCbin():1013 [1] 130000 64464 130114 0 0 0 0 0 4.2 seconds, last L Frame: 158704 INFO 2025-06-27 00:20:24,970 lopcToNetCDF.py unpackLOPCbin():1013 [1] 140000 8928 137983 0 0 0 0 0 3.5 seconds, last L Frame: 158704 INFO 2025-06-27 00:20:28,209 lopcToNetCDF.py unpackLOPCbin():1013 [1] 150000 18928 141542 0 0 0 0 0 3.2 seconds, last L Frame: 158704 INFO 2025-06-27 00:20:30,750 lopcToNetCDF.py main():2345 [1] >>> Done reading file. INFO 2025-06-27 00:20:30,750 lopcToNetCDF.py main():2346 [1] lFrameCount = 158712, mFrameCount = 142832 INFO 2025-06-27 00:20:30,750 lopcToNetCDF.py constructTimestampList():1296 [1] parosci_nc = /data/auv_data/dorado/missionnetcdfs/2019.029.00/parosci.nc INFO 2025-06-27 00:20:30,750 lopcToNetCDF.py constructTimestampList():1297 [1] Using NetCDF4 to get start and end epoch seconds for this mission from this URL: INFO 2025-06-27 00:20:30,750 lopcToNetCDF.py constructTimestampList():1300 [1] /data/auv_data/dorado/missionnetcdfs/2019.029.00/parosci.nc INFO 2025-06-27 00:20:30,753 lopcToNetCDF.py constructTimestampList():1317 [1] From associated parosci.nc file: sensor_on_time = 1548781800.5, sensor_off_time = 1548861153.1 INFO 2025-06-27 00:20:30,754 lopcToNetCDF.py constructTimestampList():1322 [1] Duration is 79352 seconds. Expecting to read 158704 L frames from the lopc.bin file. INFO 2025-06-27 00:20:30,754 lopcToNetCDF.py constructTimestampList():1330 [1] recCount not passed in, assuming we'll have 158704 records from the lopc.bin file. INFO 2025-06-27 00:20:30,754 lopcToNetCDF.py constructTimestampList():1340 [1] Calling correctSampleCountList() with sampleCountList[0] = 1 and len(sampleCountList) = 158712 INFO 2025-06-27 00:20:30,767 lopcToNetCDF.py correctSampleCountList():1737 [1] Found overflows at indices: [ 65535 131071] INFO 2025-06-27 00:20:30,767 lopcToNetCDF.py correctSampleCountList():1740 [1] Assigning values from slice starting at index 65535, i = 1 INFO 2025-06-27 00:20:30,772 lopcToNetCDF.py correctSampleCountList():1740 [1] Assigning values from slice starting at index 131071, i = 2 INFO 2025-06-27 00:20:30,773 lopcToNetCDF.py correctSampleCountList():1745 [1] Original sampleCountList = [ 1 2 3 ... 158712 158713 158714] INFO 2025-06-27 00:20:30,773 lopcToNetCDF.py correctSampleCountList():1746 [1] Found 0 0 values at indices: [] INFO 2025-06-27 00:20:30,774 lopcToNetCDF.py correctSampleCountList():1779 [1] Found 0 stuck values at indices: [] INFO 2025-06-27 00:20:30,774 lopcToNetCDF.py deSpike():1588 [1] d_sampleCountList = [1 1 1 ... 1 1 1] INFO 2025-06-27 00:20:30,774 lopcToNetCDF.py deSpike():1590 [1] Found 0 spike indicators at indices: [] INFO 2025-06-27 00:20:30,774 lopcToNetCDF.py correctSampleCountList():1805 [1] After despike() sampleCountList = [ 1 2 3 ... 158712 158713 158714] INFO 2025-06-27 00:20:30,775 lopcToNetCDF.py constructTimestampList():1347 [1] correctSampleCountList() returned correctedSampleCountList = [ 1 2 3 ... 158712 158713 158714] with len(correctedSampleCountList) = 158712 INFO 2025-06-27 00:20:30,775 lopcToNetCDF.py constructTimestampList():1358 [1] Subtracting 1 from all values of correctedSampleCountList INFO 2025-06-27 00:20:30,775 lopcToNetCDF.py constructTimestampList():1363 [1] Constructing timestampArray from instrument corrected sampleCount and constant deltaT = 0.500000 INFO 2025-06-27 00:20:30,775 lopcToNetCDF.py constructTimestampList():1368 [1] New re-zeroed correctedSampleCountList = [0.00000e+00 5.00000e-01 1.00000e+00 ... 7.93555e+04 7.93560e+04 7.93565e+04] INFO 2025-06-27 00:20:30,776 lopcToNetCDF.py constructTimestampList():1379 [1] timestampArray = [1.54878180e+09 1.54878180e+09 1.54878180e+09 ... 1.54886116e+09 1.54886116e+09 1.54886116e+09] INFO 2025-06-27 00:20:30,776 lopcToNetCDF.py constructTimestampList():1380 [1] timestampArray[:2] = [1548781800.5 1548781801.0, ..., timestampArray[-2:] = 1548861156.5 1548861157.0] INFO 2025-06-27 00:20:30,937 lopcToNetCDF.py constructTimestampList():1389 [1] timestampList[:2] = [np.float64(1548781800.5302775), np.float64(1548781801.0302775)], ..., timestampList[-2:] = [np.float64(1548861156.5302775), np.float64(1548861157.0302775)]] INFO 2025-06-27 00:20:30,937 lopcToNetCDF.py constructTimestampList():1394 [1] Subsampling correctedSampleCountList (len = 158712) according to what got written to the netCDF file by the binning interval INFO 2025-06-27 00:20:30,937 lopcToNetCDF.py constructTimestampList():1399 [1] lFrameCountWrittenList[:2] = [20, 41], ... lFrameCountWrittenList[-2:] = [158675, 158696] INFO 2025-06-27 00:20:30,938 lopcToNetCDF.py constructTimestampList():1420 [1] len(subSampledCorrectedSampleCountList) = 7557 INFO 2025-06-27 00:20:30,938 lopcToNetCDF.py constructTimestampList():1439 [1] len(timestampList) = 158712 INFO 2025-06-27 00:20:30,938 lopcToNetCDF.py constructTimestampList():1440 [1] timestampList[:2] = [np.float64(1548781800.5302775), np.float64(1548781801.0302775)], ..., timestampList[-2:] = [np.float64(1548861156.5302775), np.float64(1548861157.0302775)]] INFO 2025-06-27 00:20:30,938 lopcToNetCDF.py constructTimestampList():1446 [1] Subsampling timestampList (len = 158712) according to what got written to the netCDF file by the binning interval INFO 2025-06-27 00:20:30,940 lopcToNetCDF.py constructTimestampList():1457 [1] Taking indices [[np.int32(19), np.int32(40)] ... [np.int32(158674), np.int32(158695)]] from timestampList to create subSampledTimestampList INFO 2025-06-27 00:20:30,948 lopcToNetCDF.py constructTimestampList():1463 [1] len(subSampledTimestampList) = 7557 INFO 2025-06-27 00:20:30,949 lopcToNetCDF.py constructTimestampList():1477 [1] Finding elements of cFrameEsecsList that != -9999 INFO 2025-06-27 00:20:30,990 lopcToNetCDF.py closeNetCDFFile():2096 [1] Writing time axis for len(tsList) = 7557 INFO 2025-06-27 00:20:30,990 lopcToNetCDF.py closeNetCDFFile():2099 [1] tsList[:1] = [np.float64(1548781810.0302775)], ..., tsList[-2:] = [np.float64(1548861138.5302775), np.float64(1548861149.0302775)] INFO 2025-06-27 00:20:30,990 lopcToNetCDF.py closeNetCDFFile():2100 [1] Begin time = 2019-01-29 17:10:10 Z INFO 2025-06-27 00:20:30,990 lopcToNetCDF.py closeNetCDFFile():2103 [1] End time = 2019-01-30 15:12:29 Z INFO 2025-06-27 00:20:30,990 lopcToNetCDF.py closeNetCDFFile():2107 [1] Writing time axis for len(cFrameEsecsList) = 7557 INFO 2025-06-27 00:20:30,990 lopcToNetCDF.py closeNetCDFFile():2111 [1] cFrameEsecsList[:1] = [1.54878181e+09], ..., cFrameEsecsList[-2:] = [1.54879560e+09 1.54879561e+09] INFO 2025-06-27 00:20:30,991 lopcToNetCDF.py closeNetCDFFile():2116 [1] Begin time = 2019-01-29 17:10:10 Z INFO 2025-06-27 00:20:30,991 lopcToNetCDF.py closeNetCDFFile():2120 [1] End time = 2019-01-29 21:00:08 Z INFO 2025-06-27 00:20:30,995 lopcToNetCDF.py main():2381 [1] Created file: /data/auv_data/dorado/missionnetcdfs/2019.029.00/lopc.nc INFO 2025-06-27 00:20:30,995 lopcToNetCDF.py main():2384 [1] Processing finished: Fri Jun 27 00:20:30 2025 Elapsed processing time from start of processing = 67 seconds INFO 2025-06-27 00:20:31,001 process.py calibrate():227 [1] Calibration steps for 2019.029.00 INFO 2025-06-27 00:21:26,690 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-06-27 00:21:26,692 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-06-27 00:21:27,575 calibrate.py _nudge_pos():1806 [1] 116: 0.070 -0.0002767 -0.0000614 934 3.11 -13.201 -3.658 2019-01-29T17:14:58.129890560 INFO 2025-06-27 00:21:29,922 calibrate.py _nudge_pos():1806 [1] 343: 0.060 -0.0018162 0.0000969 4540 15.13 -17.812 1.186 2019-01-29T17:33:52.332192512 INFO 2025-06-27 00:21:31,440 calibrate.py _nudge_pos():1806 [1] 488: 0.070 -0.0040180 -0.0000271 11406 38.02 -15.688 -0.132 2019-01-29T18:14:17.536054528 INFO 2025-06-27 00:21:34,012 calibrate.py _nudge_pos():1806 [1] 736: 0.150 -0.0026203 0.0002919 9471 31.58 -12.318 1.713 2019-01-29T18:49:59.262093824 INFO 2025-06-27 00:21:36,672 calibrate.py _nudge_pos():1806 [1] 991: 0.170 -0.0027725 0.0003119 9834 32.81 -12.550 1.761 2019-01-29T19:27:02.264087296 INFO 2025-06-27 00:21:39,442 calibrate.py _nudge_pos():1806 [1] 1260: 0.140 -0.0025797 0.0002293 9515 31.71 -12.085 1.340 2019-01-29T20:03:13.455350272 INFO 2025-06-27 00:21:41,956 calibrate.py _nudge_pos():1806 [1] 1500: 0.100 -0.0026996 0.0005884 10451 34.86 -11.507 3.127 2019-01-29T20:42:04.464192000 INFO 2025-06-27 00:21:42,157 calibrate.py _nudge_pos():1806 [1] 1519: 0.100 0.0001309 -0.0004150 195 0.65 30.094 -118.917 2019-01-29T20:43:01.470286592 INFO 2025-06-27 00:21:44,062 calibrate.py _nudge_pos():1806 [1] 1695: 0.040 -0.0027143 0.0007045 9841 32.83 -12.290 3.976 2019-01-29T21:18:46.482072064 INFO 2025-06-27 00:21:46,810 calibrate.py _nudge_pos():1806 [1] 1956: 0.180 0.0006143 -0.0023971 13135 43.81 2.084 -10.139 2019-01-29T22:06:55.281332224 INFO 2025-06-27 00:21:49,572 calibrate.py _nudge_pos():1806 [1] 2217: 0.070 -0.0003603 -0.0031526 14530 48.46 -1.105 -12.055 2019-01-29T22:59:43.489259520 INFO 2025-06-27 00:21:51,983 calibrate.py _nudge_pos():1806 [1] 2442: 0.080 -0.0004985 -0.0029496 13691 45.66 -1.622 -11.969 2019-01-29T23:49:07.490557696 INFO 2025-06-27 00:21:54,373 calibrate.py _nudge_pos():1806 [1] 2664: 0.100 -0.0001335 -0.0028147 14670 48.96 -0.405 -10.654 2019-01-30T00:41:46.118210816 INFO 2025-06-27 00:21:56,694 calibrate.py _nudge_pos():1806 [1] 2877: 0.040 -0.0004073 -0.0036361 14651 48.86 -1.238 -13.789 2019-01-30T01:34:11.331684864 INFO 2025-06-27 00:21:56,866 calibrate.py _nudge_pos():1806 [1] 2893: 0.040 0.0000309 0.0000526 15 0.05 98.209 208.977 2019-01-30T01:34:29.330451712 INFO 2025-06-27 00:21:59,696 calibrate.py _nudge_pos():1806 [1] 3154: 0.150 -0.0004127 -0.0035311 13021 43.43 -1.411 -15.066 2019-01-30T02:22:15.322781440 INFO 2025-06-27 00:22:02,103 calibrate.py _nudge_pos():1806 [1] 3376: 0.100 -0.0013581 -0.0002232 3115 10.38 -19.427 -3.985 2019-01-30T02:36:19.324963328 INFO 2025-06-27 00:22:02,261 calibrate.py _nudge_pos():1806 [1] 3391: 0.120 -0.0005695 -0.0003935 175 0.58 -145.811 -125.740 2019-01-30T02:37:08.321606912 INFO 2025-06-27 00:22:03,985 calibrate.py _nudge_pos():1806 [1] 3552: 0.110 0.0000620 0.0000639 49 0.16 57.436 73.888 2019-01-30T02:39:58.329960704 INFO 2025-06-27 00:22:04,085 calibrate.py _nudge_pos():1806 [1] 3561: 0.010 -0.0075053 0.0017186 14262 47.57 -23.419 6.695 2019-01-30T03:27:41.531316736 INFO 2025-06-27 00:22:06,702 calibrate.py _nudge_pos():1806 [1] 3803: 0.040 -0.0058976 0.0036105 14336 47.81 -18.301 13.992 2019-01-30T04:19:31.516607744 INFO 2025-06-27 00:22:08,914 calibrate.py _nudge_pos():1806 [1] 4009: 0.100 -0.0039596 0.0026126 11515 38.41 -15.290 12.604 2019-01-30T05:01:22.332633856 INFO 2025-06-27 00:22:11,391 calibrate.py _nudge_pos():1806 [1] 4239: 0.190 -0.0065532 0.0020330 11740 39.16 -24.814 9.620 2019-01-30T05:44:21.334005248 INFO 2025-06-27 00:22:13,988 calibrate.py _nudge_pos():1806 [1] 4480: 0.120 -0.0060970 0.0020797 11602 38.70 -23.354 9.958 2019-01-30T06:27:03.546869760 INFO 2025-06-27 00:22:16,624 calibrate.py _nudge_pos():1806 [1] 4721: 0.060 -0.0062011 0.0022813 11824 39.44 -23.299 10.717 2019-01-30T07:10:30.347501568 INFO 2025-06-27 00:22:19,084 calibrate.py _nudge_pos():1806 [1] 4943: 0.160 -0.0029970 0.0010049 6505 21.68 -20.483 8.589 2019-01-30T07:35:52.343237632 INFO 2025-06-27 00:22:19,315 calibrate.py _nudge_pos():1806 [1] 4964: 0.160 0.0002868 0.0002581 119 0.39 108.045 121.584 2019-01-30T07:36:37.340155392 INFO 2025-06-27 00:22:21,309 calibrate.py _nudge_pos():1806 [1] 5144: 0.050 -0.0025400 0.0024194 12961 43.23 -8.708 10.371 2019-01-30T08:22:50.548430080 INFO 2025-06-27 00:22:24,352 calibrate.py _nudge_pos():1806 [1] 5416: 0.150 -0.0023539 0.0023167 12805 42.71 -8.170 10.052 2019-01-30T09:10:04.279897088 INFO 2025-06-27 00:22:26,991 calibrate.py _nudge_pos():1806 [1] 5649: 0.140 -0.0021051 0.0020805 12230 40.79 -7.652 9.451 2019-01-30T09:54:44.280517120 INFO 2025-06-27 00:22:29,571 calibrate.py _nudge_pos():1806 [1] 5880: 0.200 -0.0020673 0.0019827 12164 40.58 -7.556 9.054 2019-01-30T10:39:09.282162688 INFO 2025-06-27 00:22:32,093 calibrate.py _nudge_pos():1806 [1] 6109: 0.110 -0.0020594 0.0020506 11569 38.59 -7.916 9.846 2019-01-30T11:21:33.276482304 INFO 2025-06-27 00:22:34,734 calibrate.py _nudge_pos():1806 [1] 6347: 0.080 -0.0027647 0.0000185 11384 37.98 -10.802 0.090 2019-01-30T12:03:29.272103424 INFO 2025-06-27 00:22:37,342 calibrate.py _nudge_pos():1806 [1] 6578: 0.170 -0.0018699 -0.0014382 4115 13.71 -20.233 -19.434 2019-01-30T12:21:02.269968128 INFO 2025-06-27 00:22:37,759 calibrate.py _nudge_pos():1806 [1] 6616: 0.030 -0.0017881 -0.0011891 4470 14.90 -17.810 -14.791 2019-01-30T12:36:33.476176128 INFO 2025-06-27 00:22:38,405 calibrate.py _nudge_pos():1806 [1] 6674: 0.150 -0.0008962 -0.0007380 4365 14.58 -9.122 -9.381 2019-01-30T12:52:05.280458752 INFO 2025-06-27 00:22:38,736 calibrate.py _nudge_pos():1806 [1] 6704: 0.180 -0.0002459 -0.0001798 1670 5.56 -6.558 -5.987 2019-01-30T12:58:08.285591040 INFO 2025-06-27 00:24:11,161 calibrate.py _nudge_pos():1862 [1] 14728: - - - 5 0.01 - - INFO 2025-06-27 00:24:11,162 calibrate.py _nudge_pos():1868 [1] Points in final series = 395768 INFO 2025-06-27 00:25:04,559 calibrate.py _hs2_process():2400 [1] Number of bad hs2 points: 9 of 317067 INFO 2025-06-27 00:25:07,063 calibrate.py _geometric_depth_correction():3423 [1] hs2: d_beg_time_diff: 1 seconds, d_end_time_diff: -1 seconds INFO 2025-06-27 00:25:29,484 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 38 seconds, d_end_time_diff: -1 seconds INFO 2025-06-27 00:25:31,796 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 38 seconds, d_end_time_diff: -1 seconds INFO 2025-06-27 00:25:31,800 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2019.029.00/ctd1.nc INFO 2025-06-27 00:25:31,802 calibrate.py _range_qc_combined_nc():898 [1] Setting 1 ctd1_salinity values to NaN INFO 2025-06-27 00:25:31,802 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-06-27 00:25:31,802 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1 INFO 2025-06-27 00:25:49,114 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 22 seconds, d_end_time_diff: -1 seconds INFO 2025-06-27 00:25:51,429 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 22 seconds, d_end_time_diff: -1 seconds INFO 2025-06-27 00:25:51,434 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2019.029.00/ctd2.nc INFO 2025-06-27 00:25:51,435 calibrate.py _range_qc_combined_nc():898 [1] Setting 2 ctd2_salinity values to NaN INFO 2025-06-27 00:25:51,436 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-06-27 00:25:51,436 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2 INFO 2025-06-27 00:25:54,381 calibrate.py _biolume_process():3128 [1] Checking for non-monotonic increasing time60hz INFO 2025-06-27 00:25:57,989 calibrate.py _biolume_process():3131 [1] Removing non-monotonic increasing time60hz at indices: [ 231840 231841 231842 ... 4267036 4267037 4267038] INFO 2025-06-27 00:25:58,709 calibrate.py _geometric_depth_correction():3423 [1] biolume: d_beg_time_diff: -5 seconds, d_end_time_diff: -1 seconds ERROR 2025-06-27 00:27:13,451 calibrate.py process_logs():3542 [1] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2019.029.00 INFO 2025-06-27 00:27:19,795 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2019.029.00/dorado_2019.029.00_cal.nc INFO 2025-06-27 00:27:54,287 calibrate.py write_netcdf():3512 [1] Data variables written: biolume_avg_biolume, biolume_depth, biolume_flow, biolume_raw, biolume_time, biolume_time60hz, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_salinity_onboard, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_salinity_onboard, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, hs2_bbp420, hs2_bbp700, hs2_depth, hs2_fl700, hs2_time, isus_nitrate, isus_quality, isus_temp, isus_time, lopc_LCcount, lopc_countListSum, lopc_flowSpeed, lopc_nonTransCount, lopc_time, lopc_transCount, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, tailcone_propRpm, tailcone_time, time INFO 2025-06-27 00:27:54,295 process.py align():251 [1] Alignment steps for 2019.029.00 INFO 2025-06-27 00:27:54,397 align.py process_cal():139 [1] Processing dorado_2019.029.00_cal.nc from /data/auv_data/dorado/missionnetcdfs/2019.029.00 INFO 2025-06-27 00:27:54,498 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-27 00:27:54,508 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-06-27 00:27:54,758 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-27 00:27:54,773 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-06-27 00:27:55,009 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-27 00:27:55,026 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-06-27 00:27:55,167 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-06-27 00:27:55,167 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-06-27 00:27:55,270 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-27 00:27:55,283 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-06-27 00:27:55,517 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2019.029.00_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-27 00:27:55,528 align.py process_cal():249 [1] hs2_bbp420: instrument_sample_rate_hz = 4.00 INFO 2025-06-27 00:27:55,732 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2019.029.00_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-27 00:27:55,743 align.py process_cal():249 [1] hs2_bbp700: instrument_sample_rate_hz = 4.00 INFO 2025-06-27 00:27:55,946 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2019.029.00_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-27 00:27:55,957 align.py process_cal():249 [1] hs2_fl700: instrument_sample_rate_hz = 4.00 INFO 2025-06-27 00:27:56,159 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2019.029.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-27 00:27:56,170 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-27 00:27:56,380 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2019.029.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-27 00:27:56,392 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-27 00:27:56,604 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2019.029.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-27 00:27:56,615 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-27 00:27:56,820 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2019.029.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-27 00:27:56,831 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-27 00:27:57,038 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2019.029.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-27 00:27:57,049 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-27 00:27:57,256 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2019.029.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-27 00:27:57,267 align.py process_cal():249 [1] ctd1_salinity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-27 00:27:57,473 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2019.029.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-27 00:27:57,486 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 4.00 INFO 2025-06-27 00:27:57,693 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2019.029.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-27 00:27:57,704 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 4.00 INFO 2025-06-27 00:27:57,908 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2019.029.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-27 00:27:57,919 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 4.00 INFO 2025-06-27 00:27:58,125 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2019.029.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-27 00:27:58,136 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 4.00 INFO 2025-06-27 00:27:58,343 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2019.029.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-27 00:27:58,353 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-27 00:27:58,559 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2019.029.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-27 00:27:58,570 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-27 00:27:58,773 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2019.029.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-27 00:27:58,785 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-27 00:27:58,995 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2019.029.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-27 00:27:59,007 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-27 00:27:59,211 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2019.029.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-27 00:27:59,223 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-27 00:27:59,428 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2019.029.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-27 00:27:59,440 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-27 00:27:59,654 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2019.029.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-27 00:27:59,668 align.py process_cal():249 [1] ctd2_salinity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-27 00:27:59,874 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2019.029.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-27 00:27:59,886 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 4.00 INFO 2025-06-27 00:28:00,099 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2019.029.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-27 00:28:00,109 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-27 00:28:00,366 align.py process_cal():249 [1] isus_nitrate: instrument_sample_rate_hz = 0.78 INFO 2025-06-27 00:28:00,533 align.py process_cal():249 [1] isus_temp: instrument_sample_rate_hz = 0.78 INFO 2025-06-27 00:28:00,709 align.py process_cal():249 [1] isus_quality: instrument_sample_rate_hz = 0.78 INFO 2025-06-27 00:28:00,879 align.py process_cal():249 [1] biolume_flow: instrument_sample_rate_hz = 0.98 INFO 2025-06-27 00:28:01,054 align.py process_cal():249 [1] biolume_avg_biolume: instrument_sample_rate_hz = 0.98 INFO 2025-06-27 00:28:01,383 align.py process_cal():249 [1] biolume_raw: instrument_sample_rate_hz = 58.95 INFO 2025-06-27 00:28:03,551 align.py process_cal():249 [1] lopc_countListSum: instrument_sample_rate_hz = 0.10 INFO 2025-06-27 00:28:03,695 align.py process_cal():249 [1] lopc_transCount: instrument_sample_rate_hz = 0.10 INFO 2025-06-27 00:28:03,837 align.py process_cal():249 [1] lopc_nonTransCount: instrument_sample_rate_hz = 0.10 INFO 2025-06-27 00:28:03,978 align.py process_cal():249 [1] lopc_LCcount: instrument_sample_rate_hz = 0.10 INFO 2025-06-27 00:28:04,120 align.py process_cal():249 [1] lopc_flowSpeed: instrument_sample_rate_hz = 0.10 INFO 2025-06-27 00:28:04,271 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 5.00 INFO 2025-06-27 00:28:04,435 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2019.029.00/dorado_2019.029.00_align.nc INFO 2025-06-27 00:28:04,888 align.py write_netcdf():342 [1] Data variables written: biolume_avg_biolume, biolume_depth, biolume_flow, biolume_latitude, biolume_longitude, biolume_raw, biolume_time, biolume_time60hz, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_salinity_onboard, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_salinity_onboard, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, hs2_bbp420, hs2_bbp700, hs2_depth, hs2_fl700, hs2_latitude, hs2_longitude, hs2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, lopc_LCcount, lopc_countListSum, lopc_depth, lopc_flowSpeed, lopc_latitude, lopc_longitude, lopc_nonTransCount, lopc_time, lopc_transCount, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-06-27 00:28:04,892 process.py resample():273 [1] Resampling steps for 2019.029.00 INFO 2025-06-27 00:28:04,893 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-06-27 00:28:04,982 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2019.029.00/dorado_2019.029.00_align.nc mission netCDF file INFO 2025-06-27 00:28:04,992 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2019.029.00/dorado_2019.029.00_align.nc mission netCDF file INFO 2025-06-27 00:28:04,994 resample.py get_mission_start_end():1145 [1] navigation: 2019-01-29T17:10:35.337893120 to 2019-01-30T15:12:33.138950656 (0 days 00:00:00 before mission_end) INFO 2025-06-27 00:28:04,997 resample.py get_mission_start_end():1145 [1] hs2 : 2019-01-29T17:10:01.650200832 to 2019-01-30T15:12:33.058956032 (0 days 00:00:00.079994624 before mission_end) INFO 2025-06-27 00:28:04,999 resample.py get_mission_start_end():1145 [1] ctd1 : 2019-01-29T17:10:39.517606656 to 2019-01-30T15:12:33.058956032 (0 days 00:00:00.079994624 before mission_end) INFO 2025-06-27 00:28:05,002 resample.py get_mission_start_end():1145 [1] ctd2 : 2019-01-29T17:10:23.118729984 to 2019-01-30T15:12:33.048956672 (0 days 00:00:00.089993984 before mission_end) INFO 2025-06-27 00:28:05,004 resample.py get_mission_start_end():1145 [1] isus : 2019-01-29T17:10:56.856418816 to 2019-01-30T15:12:32.618986240 (0 days 00:00:00.519964416 before mission_end) INFO 2025-06-27 00:28:05,006 resample.py get_mission_start_end():1145 [1] biolume : 2019-01-29T17:09:55.760570112 to 2019-01-30T15:12:31.639019008 (0 days 00:00:01.499931648 before mission_end) INFO 2025-06-27 00:28:05,007 resample.py get_mission_start_end():1145 [1] lopc : 2019-01-29T17:10:10.030277376 to 2019-01-30T15:12:29.030277376 (0 days 00:00:04.108673280 before mission_end) INFO 2025-06-27 00:28:05,010 resample.py get_mission_start_end():1145 [1] tailcone : 2019-01-29T17:10:00.920250880 to 2019-01-30T15:12:33.128951296 (0 days 00:00:00.009999360 before mission_end) INFO 2025-06-27 00:28:05,012 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2019.029.00/dorado_2019.029.00_align.nc mission netCDF file INFO 2025-06-27 00:28:05,012 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-06-27 00:28:05,815 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-06-27 00:28:05,942 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-06-27 00:28:06,066 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-06-27 00:28:06,187 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-06-27 00:28:06,290 resample.py resample_variable():1031 [1] Resampling hs2_bbp420 with frequency 1S following 3 point median filter INFO 2025-06-27 00:28:06,394 resample.py resample_variable():1031 [1] Resampling hs2_bbp700 with frequency 1S following 3 point median filter INFO 2025-06-27 00:28:06,496 resample.py resample_variable():1031 [1] Resampling hs2_fl700 with frequency 1S following 3 point median filter INFO 2025-06-27 00:28:06,596 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-06-27 00:28:06,692 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-06-27 00:28:06,788 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-06-27 00:28:06,883 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-27 00:28:06,978 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-27 00:28:07,073 resample.py resample_variable():1031 [1] Resampling ctd1_salinity_onboard with frequency 1S following 3 point median filter INFO 2025-06-27 00:28:07,168 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-06-27 00:28:07,264 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-06-27 00:28:07,359 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-06-27 00:28:07,454 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-06-27 00:28:07,553 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-06-27 00:28:07,656 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-06-27 00:28:07,757 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-06-27 00:28:07,857 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-27 00:28:07,958 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-27 00:28:08,058 resample.py resample_variable():1031 [1] Resampling ctd2_salinity_onboard with frequency 1S following 3 point median filter INFO 2025-06-27 00:28:08,159 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-06-27 00:28:08,197 resample.py resample_variable():1031 [1] Resampling isus_nitrate with frequency 1S following 3 point median filter INFO 2025-06-27 00:28:08,228 resample.py resample_variable():1031 [1] Resampling isus_temp with frequency 1S following 3 point median filter INFO 2025-06-27 00:28:08,259 resample.py resample_variable():1031 [1] Resampling isus_quality with frequency 1S following 3 point median filter INFO 2025-06-27 00:28:08,292 resample.py resample_variable():1031 [1] Resampling biolume_flow with frequency 1S following 3 point median filter INFO 2025-06-27 00:28:08,326 resample.py resample_variable():1031 [1] Resampling biolume_avg_biolume with frequency 1S following 3 point median filter INFO 2025-06-27 00:28:08,335 resample.py set_proxy_parameters():520 [1] Setting biolume proxy parameters for period4 INFO 2025-06-27 00:28:08,336 resample.py add_biolume_proxies():549 [1] Adding biolume proxy variables computed from biolume_raw INFO 2025-06-27 00:28:11,348 resample.py add_biolume_proxies():595 [1] Using flash_threshold = 1.0000e+11 INFO 2025-06-27 00:28:12,679 resample.py add_biolume_proxies():638 [1] Computing flashes per liter: nbflash_high, nbflash_low INFO 2025-06-27 00:28:13,180 resample.py add_biolume_proxies():666 [1] Saving flash intensity: biolume_intflash - the upper bound of the background envelope INFO 2025-06-27 00:28:13,367 resample.py add_biolume_proxies():683 [1] Saving Background bioluminescence (dinoflagellates proxy) INFO 2025-06-27 00:28:13,470 resample.py select_nighttime_bl_raw():432 [1] No sunset or sunrise found during this mission. INFO 2025-06-27 00:28:13,470 resample.py add_biolume_proxies():694 [1] No nighttime_bl_raw data to compute adinos, diatoms, hdinos proxies INFO 2025-06-27 00:28:13,508 resample.py resample_variable():1031 [1] Resampling lopc_countListSum with frequency 1S following 3 point median filter INFO 2025-06-27 00:28:13,530 resample.py resample_variable():1031 [1] Resampling lopc_transCount with frequency 1S following 3 point median filter INFO 2025-06-27 00:28:13,544 resample.py resample_variable():1031 [1] Resampling lopc_nonTransCount with frequency 1S following 3 point median filter INFO 2025-06-27 00:28:13,558 resample.py resample_variable():1031 [1] Resampling lopc_LCcount with frequency 1S following 3 point median filter INFO 2025-06-27 00:28:13,572 resample.py resample_variable():1031 [1] Resampling lopc_flowSpeed with frequency 1S following 3 point median filter INFO 2025-06-27 00:28:13,680 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-06-27 00:28:14,273 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2019.029.00/dorado_2019.029.00_1S.nc INFO 2025-06-27 00:28:21,872 create_products.py _get_best_ctd():375 [1] Best CTD is ctd2 INFO 2025-06-27 00:28:46,279 create_products.py gulper_odv():522 [1] Wrote 16 Gulper data lines to /data/auv_data/dorado/missionodvs/2019.029.00/dorado_2019.029.00_1S_Gulper.txt INFO 2025-06-27 00:28:46,279 process.py archive():337 [1] Archiving steps for 2019.029.00 INFO 2025-06-27 00:28:46,280 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2019.029.00/dorado_2019.029.00, BASE_PATH = /data/auv_data INFO 2025-06-27 00:28:46,281 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2019.029.00/dorado_2019.029.00 files to /Volumes/AUVCTD/surveys/2019/netcdf INFO 2025-06-27 00:28:46,284 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2019/netcdf/dorado_2019.029.00_1S.nc INFO 2025-06-27 00:28:46,356 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2019.029.00/dorado_2019.029.00_1S.nc /Volumes/AUVCTD/surveys/2019/netcdf done. INFO 2025-06-27 00:28:46,357 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2019/netcdf/dorado_2019.029.00_cal.nc INFO 2025-06-27 00:28:46,901 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2019.029.00/dorado_2019.029.00_cal.nc /Volumes/AUVCTD/surveys/2019/netcdf done. INFO 2025-06-27 00:28:46,902 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2019/netcdf/dorado_2019.029.00_align.nc INFO 2025-06-27 00:28:47,771 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2019.029.00/dorado_2019.029.00_align.nc /Volumes/AUVCTD/surveys/2019/netcdf done. INFO 2025-06-27 00:28:47,905 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2019.029.00/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2019/2019029/2019.029.00 done. INFO 2025-06-27 00:28:48,022 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2019.029.00/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2019/2019029/2019.029.00 done. INFO 2025-06-27 00:28:48,040 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2019.029.00/gps.nc /Volumes/AUVCTD/missionnetcdfs/2019/2019029/2019.029.00 done. INFO 2025-06-27 00:28:48,148 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2019.029.00/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2019/2019029/2019.029.00 done. INFO 2025-06-27 00:28:48,609 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2019.029.00/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2019/2019029/2019.029.00 done. INFO 2025-06-27 00:28:48,626 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2019.029.00/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2019/2019029/2019.029.00 done. INFO 2025-06-27 00:28:48,754 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2019.029.00/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2019/2019029/2019.029.00 done. INFO 2025-06-27 00:28:48,837 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2019.029.00/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2019/2019029/2019.029.00 done. INFO 2025-06-27 00:28:49,069 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2019.029.00/biolume.nc /Volumes/AUVCTD/missionnetcdfs/2019/2019029/2019.029.00 done. INFO 2025-06-27 00:28:49,313 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2019.029.00/lopc.nc /Volumes/AUVCTD/missionnetcdfs/2019/2019029/2019.029.00 done. INFO 2025-06-27 00:28:49,313 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-06-27 00:28:49,320 archive.py copy_to_AUVTCD():133 [1] Removing /Volumes/AUVCTD/surveys/2019/odv/dorado_2019.029.00_1S_Gulper.txt INFO 2025-06-27 00:28:49,332 archive.py copy_to_AUVTCD():136 [1] copyfile /data/auv_data/dorado/missionodvs/2019.029.00/dorado_2019.029.00_1S_Gulper.txt /Volumes/AUVCTD/surveys/2019/odv done. INFO 2025-06-27 00:28:49,332 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2019.029.00/dorado_2019.029.00_processing.log /Volumes/AUVCTD/surveys/2019/netcdf