INFO 2025-10-20 22:16:59,142 process.py process_mission():429 [1] commandline = /src/data/process_i2map.py -v --noinput --start_year 2018 --end_year 2018 --start_yd 1 --end_yd 365 --num_cores 1 --clobber INFO 2025-10-20 22:16:59,142 process.py process_mission():449 [1] Processing i2map mission 2018.337.00 by user docker_user on host 6ad284762e9a INFO 2025-10-20 22:16:59,142 process.py download_process():165 [1] Download and processing steps for 2018.337.00 INFO 2025-10-20 22:16:59,142 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/M3/master/i2MAP/2018/12/20181203/2018.337.00 INFO 2025-10-20 22:16:59,142 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/M3/master/i2MAP/2018/12/20181203/2018.337.00 to /data/auv_data/i2map/missionlogs/2018.337.00 INFO 2025-10-20 22:16:59,597 logs2netcdfs.py download_process_logs():779 [1] Processing mission: i2map 2018.337.00 INFO 2025-10-20 22:16:59,597 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/i2map/missionlogs/2018.337.00/gps.log (548492 bytes) INFO 2025-10-20 22:16:59,660 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/i2map/missionlogs/2018.337.00/navigation.log (35602584 bytes) INFO 2025-10-20 22:17:02,277 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/i2map/missionlogs/2018.337.00/parosci.log (10020902 bytes) INFO 2025-10-20 22:17:03,105 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/i2map/missionlogs/2018.337.00/seabird25p.log (20115130 bytes) INFO 2025-10-20 22:17:04,441 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/i2map/missionlogs/2018.337.00/seabird25p.log: [1] INFO 2025-10-20 22:17:04,512 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/i2map/missionlogs/2018.337.00/tailCone.log (5035579 bytes) INFO 2025-10-20 22:17:05,188 logs2netcdfs.py download_process_logs():807 [1] Time to process: 5.59 seconds INFO 2025-10-20 22:17:05,189 process.py calibrate():227 [1] Calibration steps for 2018.337.00 INFO 2025-10-20 22:17:05,349 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-10-20 22:17:05,351 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-10-20 22:17:06,008 calibrate.py _nudge_pos():1806 [1] 101: 0.040 -0.0041068 0.0033240 46849 156.16 -3.908 3.944 2018-12-03T19:31:21.320052736 INFO 2025-10-20 22:17:06,564 calibrate.py _nudge_pos():1806 [1] 158: 0.140 -0.0253834 0.0045907 6340 21.13 -178.484 40.258 2018-12-03T19:53:25.319352320 INFO 2025-10-20 22:17:06,585 calibrate.py _nudge_pos():1806 [1] 160: 0.140 -0.0256064 0.0046481 70 0.23 -16542.494 3745.008 2018-12-03T19:53:41.318256384 INFO 2025-10-20 22:17:06,663 calibrate.py _nudge_pos():1806 [1] 168: 0.150 -0.0258879 0.0047601 80 0.26 -14607.341 3349.756 2018-12-03T19:54:05.316612608 INFO 2025-10-20 22:17:06,867 calibrate.py _nudge_pos():1806 [1] 189: 0.030 -0.0333246 0.0084196 6551 21.83 -226.761 71.458 2018-12-03T20:16:15.525486848 INFO 2025-10-20 22:17:06,917 calibrate.py _nudge_pos():1806 [1] 194: 0.030 -0.0335033 0.0084132 55 0.18 -27654.679 8661.542 2018-12-03T20:16:30.524459264 INFO 2025-10-20 22:17:08,242 calibrate.py _nudge_pos():1806 [1] 330: 0.150 -0.0316357 0.0114233 6920 23.06 -203.769 91.780 2018-12-03T20:41:50.520332544 INFO 2025-10-20 22:18:18,871 calibrate.py _nudge_pos():1862 [1] 7566: - - - 1 0.00 - - INFO 2025-10-20 22:18:18,871 calibrate.py _nudge_pos():1868 [1] Points in final series = 104303 INFO 2025-10-20 22:18:28,428 calibrate.py _read_oxy_coeffs():1189 [1] Looking for calibration file for O2 sensor serial number 2935 on port side INFO 2025-10-20 22:18:28,430 calibrate.py _read_oxy_coeffs():1219 [1] Executing: find "/Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files" -name "2935" INFO 2025-10-20 22:18:28,662 calibrate.py _read_oxy_coeffs():1238 [1] Found calibration date dirs: 2014_Nov 2021_Mar 2022_Apr WARNING 2025-10-20 22:18:28,666 calibrate.py _cal_date_xml_files():1081 [1] Found 4 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/2935/2014_Nov INFO 2025-10-20 22:18:28,667 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-20 22:18:28,672 calibrate.py _cal_date_xml_files():1081 [1] Found 4 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/2935/2021_Mar INFO 2025-10-20 22:18:28,672 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-20 22:18:28,676 calibrate.py _cal_date_xml_files():1081 [1] Found 4 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/2935/2022_Apr INFO 2025-10-20 22:18:28,677 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} INFO 2025-10-20 22:18:28,684 calibrate.py _read_oxy_coeffs():1247 [1] File /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/2935/2022_Apr/Oxygen_SBE43_2935.xml has CalibrationDate 2022-03-22 00:00:00+00:00 INFO 2025-10-20 22:18:28,684 calibrate.py _read_oxy_coeffs():1253 [1] Breaking from loop as /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/2935/2022_Apr/Oxygen_SBE43_2935.xml is after 2018.337.00 with mission_start=2018-12-03T16:53:45.397827584 INFO 2025-10-20 22:18:28,685 calibrate.py _read_oxy_coeffs():1270 [1] File /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/2935/2022_Apr/Oxygen_SBE43_2935.xml is the first calibration file, but is after 2018.337.00 with mission_start=2018-12-03T16:53:45.397827584 INFO 2025-10-20 22:18:31,808 calibrate.py _calibrated_oxygen():2513 [1] dissolvedO2_port: parsed from /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/2935/2022_Apr/Oxygen_SBE43_2935.xml file: {'Soc': 0.42595, 'offset': -0.5339, 'A': -0.0041113, 'B': 0.00020802, 'C': -3.0027e-06, 'D0': 2.5826, 'D1': 0.000192634, 'D2': -0.0464803, 'E': 0.036, 'Tau20': 1.09, 'H1': -0.033, 'H2': 5000.0, 'H3': 1450.0} INFO 2025-10-20 22:18:31,814 calibrate.py _read_oxy_coeffs():1189 [1] Looking for calibration file for O2 sensor serial number 3488 on stbd side INFO 2025-10-20 22:18:31,814 calibrate.py _read_oxy_coeffs():1219 [1] Executing: find "/Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files" -name "3488" INFO 2025-10-20 22:18:32,004 calibrate.py _read_oxy_coeffs():1238 [1] Found calibration date dirs: 2016_dec 2021_mar 2022_Jan WARNING 2025-10-20 22:18:32,009 calibrate.py _cal_date_xml_files():1081 [1] Found 4 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/3488/2016_dec INFO 2025-10-20 22:18:32,009 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-20 22:18:32,014 calibrate.py _cal_date_xml_files():1081 [1] Found 4 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/3488/2021_mar INFO 2025-10-20 22:18:32,014 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-20 22:18:32,019 calibrate.py _cal_date_xml_files():1081 [1] Found 4 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/3488/2022_Jan INFO 2025-10-20 22:18:32,019 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} INFO 2025-10-20 22:18:32,025 calibrate.py _read_oxy_coeffs():1247 [1] File /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/3488/2016_dec/43-3488.xml has CalibrationDate 2016-12-16 00:00:00+00:00 INFO 2025-10-20 22:18:32,026 calibrate.py _read_oxy_coeffs():1263 [1] File /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/3488/2016_dec/43-3488.xml is just before 2018.337.00 with mission_start=2018-12-03T16:53:45.397827584 INFO 2025-10-20 22:18:35,197 calibrate.py _calibrated_oxygen():2513 [1] dissolvedO2_stbd: parsed from /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/3488/2016_dec/43-3488.xml file: {'Soc': 0.44664, 'offset': -0.507, 'A': -0.0030812, 'B': 7.8442e-05, 'C': -9.0601e-07, 'D0': 2.5826, 'D1': 0.000192634, 'D2': -0.0464803, 'E': 0.036, 'Tau20': 1.44, 'H1': -0.033, 'H2': 5000.0, 'H3': 1450.0} INFO 2025-10-20 22:18:39,360 calibrate.py _geometric_depth_correction():3423 [1] seabird25p: d_beg_time_diff: 9 seconds, d_end_time_diff: -1 seconds INFO 2025-10-20 22:18:40,731 calibrate.py _geometric_depth_correction():3423 [1] seabird25p: d_beg_time_diff: 9 seconds, d_end_time_diff: -1 seconds INFO 2025-10-20 22:18:40,736 calibrate.py _ctd_process():2919 [1] Performing range checking of ['seabird25p_salinity'] in 2018.337.00/seabird25p.nc INFO 2025-10-20 22:18:40,738 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 seabird25p_salinity values to NaN INFO 2025-10-20 22:18:40,739 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('seabird25p_salinity', Range(min=30, max=40))] INFO 2025-10-20 22:18:40,739 calibrate.py _range_qc_combined_nc():936 [1] Done range checking seabird25p INFO 2025-10-20 22:18:40,833 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/i2map/missionnetcdfs/2018.337.00/i2map_2018.337.00_cal.nc INFO 2025-10-20 22:18:53,114 calibrate.py write_netcdf():3512 [1] Data variables written: depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, seabird25p_beam_transmittance, seabird25p_conductivity, seabird25p_conductivity_onboard, seabird25p_depth, seabird25p_dissolvedO2_port, seabird25p_dissolvedO2_stbd, seabird25p_oxygen_mll_port, seabird25p_oxygen_mll_stbd, seabird25p_oxygen_umolkg_port, seabird25p_oxygen_umolkg_stbd, seabird25p_salinity, seabird25p_salinity_onboard, seabird25p_temperature, seabird25p_temperature_onboard, seabird25p_time, tailcone_propRpm, tailcone_time, time INFO 2025-10-20 22:18:53,118 process.py align():251 [1] Alignment steps for 2018.337.00 INFO 2025-10-20 22:18:53,142 align.py process_cal():139 [1] Processing i2map_2018.337.00_cal.nc from /data/auv_data/i2map/missionnetcdfs/2018.337.00 INFO 2025-10-20 22:18:53,172 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-10-20 22:18:53,176 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-10-20 22:18:53,247 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-10-20 22:18:53,252 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-10-20 22:18:53,323 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-10-20 22:18:53,328 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-10-20 22:18:53,371 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-10-20 22:18:53,372 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-10-20 22:18:53,399 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-10-20 22:18:53,404 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-10-20 22:18:53,481 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2018.337.00_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-20 22:18:53,488 align.py process_cal():249 [1] seabird25p_temperature: instrument_sample_rate_hz = 7.99 INFO 2025-10-20 22:18:53,589 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2018.337.00_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-20 22:18:53,596 align.py process_cal():249 [1] seabird25p_conductivity: instrument_sample_rate_hz = 7.99 INFO 2025-10-20 22:18:53,695 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2018.337.00_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-20 22:18:53,702 align.py process_cal():249 [1] seabird25p_salinity: instrument_sample_rate_hz = 7.99 INFO 2025-10-20 22:18:53,800 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2018.337.00_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-20 22:18:53,808 align.py process_cal():249 [1] seabird25p_temperature_onboard: instrument_sample_rate_hz = 7.99 INFO 2025-10-20 22:18:53,914 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2018.337.00_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-20 22:18:53,920 align.py process_cal():249 [1] seabird25p_conductivity_onboard: instrument_sample_rate_hz = 7.99 INFO 2025-10-20 22:18:54,019 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2018.337.00_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-20 22:18:54,025 align.py process_cal():249 [1] seabird25p_salinity_onboard: instrument_sample_rate_hz = 7.99 INFO 2025-10-20 22:18:54,124 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2018.337.00_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-20 22:18:54,131 align.py process_cal():249 [1] seabird25p_dissolvedO2_port: instrument_sample_rate_hz = 7.99 INFO 2025-10-20 22:18:54,277 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2018.337.00_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-20 22:18:54,284 align.py process_cal():249 [1] seabird25p_oxygen_mll_port: instrument_sample_rate_hz = 7.99 INFO 2025-10-20 22:18:54,401 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2018.337.00_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-20 22:18:54,411 align.py process_cal():249 [1] seabird25p_oxygen_umolkg_port: instrument_sample_rate_hz = 7.99 INFO 2025-10-20 22:18:54,524 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2018.337.00_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-20 22:18:54,531 align.py process_cal():249 [1] seabird25p_dissolvedO2_stbd: instrument_sample_rate_hz = 7.99 INFO 2025-10-20 22:18:54,632 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2018.337.00_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-20 22:18:54,639 align.py process_cal():249 [1] seabird25p_oxygen_mll_stbd: instrument_sample_rate_hz = 7.99 INFO 2025-10-20 22:18:54,741 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2018.337.00_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-20 22:18:54,748 align.py process_cal():249 [1] seabird25p_oxygen_umolkg_stbd: instrument_sample_rate_hz = 7.99 INFO 2025-10-20 22:18:54,850 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2018.337.00_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-20 22:18:54,857 align.py process_cal():249 [1] seabird25p_beam_transmittance: instrument_sample_rate_hz = 7.99 INFO 2025-10-20 22:18:54,957 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2018.337.00_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-20 22:18:54,963 align.py process_cal():249 [1] seabird25p_depth: instrument_sample_rate_hz = 7.99 INFO 2025-10-20 22:18:55,078 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 5.00 INFO 2025-10-20 22:18:55,129 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/i2map/missionnetcdfs/2018.337.00/i2map_2018.337.00_align.nc INFO 2025-10-20 22:18:55,186 align.py write_netcdf():342 [1] Data variables written: navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, seabird25p_beam_transmittance, seabird25p_conductivity, seabird25p_conductivity_onboard, seabird25p_depth, seabird25p_dissolvedO2_port, seabird25p_dissolvedO2_stbd, seabird25p_latitude, seabird25p_longitude, seabird25p_oxygen_mll_port, seabird25p_oxygen_mll_stbd, seabird25p_oxygen_umolkg_port, seabird25p_oxygen_umolkg_stbd, seabird25p_salinity, seabird25p_salinity_onboard, seabird25p_temperature, seabird25p_temperature_onboard, seabird25p_time, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-10-20 22:18:55,188 process.py resample():273 [1] Resampling steps for 2018.337.00 INFO 2025-10-20 22:18:55,189 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-10-20 22:18:55,205 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/i2map/missionnetcdfs/2018.337.00/i2map_2018.337.00_align.nc mission netCDF file INFO 2025-10-20 22:18:55,208 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/i2map/missionnetcdfs/2018.337.00/i2map_2018.337.00_align.nc mission netCDF file INFO 2025-10-20 22:18:55,210 resample.py get_mission_start_end():1145 [1] navigation: 2018-12-03T16:54:11.616031744 to 2018-12-03T22:43:12.321495040 (0 days 00:00:00 before mission_end) INFO 2025-10-20 22:18:55,212 resample.py get_mission_start_end():1145 [1] seabird25p: 2018-12-03T16:53:45.397827584 to 2018-12-03T22:43:12.231501056 (0 days 00:00:00.089993984 before mission_end) INFO 2025-10-20 22:18:55,214 resample.py get_mission_start_end():1145 [1] tailcone : 2018-12-03T16:53:33.108669440 to 2018-12-03T22:43:12.271498496 (0 days 00:00:00.049996544 before mission_end) INFO 2025-10-20 22:18:55,215 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/i2map/missionnetcdfs/2018.337.00/i2map_2018.337.00_align.nc mission netCDF file INFO 2025-10-20 22:18:55,215 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-10-20 22:18:55,512 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-10-20 22:18:55,551 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-10-20 22:18:55,589 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-10-20 22:18:55,625 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-10-20 22:18:55,677 resample.py resample_variable():1031 [1] Resampling seabird25p_temperature with frequency 1S following 3 point median filter INFO 2025-10-20 22:18:55,730 resample.py resample_variable():1031 [1] Resampling seabird25p_conductivity with frequency 1S following 3 point median filter INFO 2025-10-20 22:18:55,789 resample.py resample_variable():1031 [1] Resampling seabird25p_salinity with frequency 1S following 3 point median filter INFO 2025-10-20 22:18:55,845 resample.py resample_variable():1031 [1] Resampling seabird25p_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-10-20 22:18:55,903 resample.py resample_variable():1031 [1] Resampling seabird25p_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-10-20 22:18:55,963 resample.py resample_variable():1031 [1] Resampling seabird25p_salinity_onboard with frequency 1S following 3 point median filter INFO 2025-10-20 22:18:56,023 resample.py resample_variable():1031 [1] Resampling seabird25p_dissolvedO2_port with frequency 1S following 3 point median filter INFO 2025-10-20 22:18:56,084 resample.py resample_variable():1031 [1] Resampling seabird25p_oxygen_mll_port with frequency 1S following 3 point median filter INFO 2025-10-20 22:18:56,146 resample.py resample_variable():1031 [1] Resampling seabird25p_oxygen_umolkg_port with frequency 1S following 3 point median filter INFO 2025-10-20 22:18:56,206 resample.py resample_variable():1031 [1] Resampling seabird25p_dissolvedO2_stbd with frequency 1S following 3 point median filter INFO 2025-10-20 22:18:56,266 resample.py resample_variable():1031 [1] Resampling seabird25p_oxygen_mll_stbd with frequency 1S following 3 point median filter INFO 2025-10-20 22:18:56,326 resample.py resample_variable():1031 [1] Resampling seabird25p_oxygen_umolkg_stbd with frequency 1S following 3 point median filter INFO 2025-10-20 22:18:56,385 resample.py resample_variable():1031 [1] Resampling seabird25p_beam_transmittance with frequency 1S following 3 point median filter INFO 2025-10-20 22:18:56,427 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-10-20 22:18:56,614 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/i2map/missionnetcdfs/2018.337.00/i2map_2018.337.00_1S.nc INFO 2025-10-20 22:18:56,616 process.py archive():337 [1] Archiving steps for 2018.337.00 INFO 2025-10-20 22:18:56,616 process.py archive():347 [1] nc_file_base = /data/auv_data/i2map/missionnetcdfs/2018.337.00/i2map_2018.337.00, BASE_PATH = /data/auv_data INFO 2025-10-20 22:18:56,618 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/i2map/missionnetcdfs/2018.337.00/i2map_2018.337.00 files to /Volumes/AUVCTD/surveys/2018/netcdf INFO 2025-10-20 22:18:56,620 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2018/netcdf/i2map_2018.337.00_1S.nc INFO 2025-10-20 22:18:56,636 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2018.337.00/i2map_2018.337.00_1S.nc /Volumes/AUVCTD/surveys/2018/netcdf done. INFO 2025-10-20 22:18:56,637 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2018/netcdf/i2map_2018.337.00_cal.nc INFO 2025-10-20 22:18:56,732 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2018.337.00/i2map_2018.337.00_cal.nc /Volumes/AUVCTD/surveys/2018/netcdf done. INFO 2025-10-20 22:18:56,733 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2018/netcdf/i2map_2018.337.00_align.nc INFO 2025-10-20 22:18:56,812 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2018.337.00/i2map_2018.337.00_align.nc /Volumes/AUVCTD/surveys/2018/netcdf done. INFO 2025-10-20 22:18:56,823 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2018.337.00/gps.nc /Volumes/AUVCTD/missionnetcdfs/2018/2018337/2018.337.00 done. INFO 2025-10-20 22:18:56,920 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2018.337.00/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2018/2018337/2018.337.00 done. INFO 2025-10-20 22:18:56,947 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2018.337.00/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2018/2018337/2018.337.00 done. INFO 2025-10-20 22:18:57,003 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2018.337.00/seabird25p.nc /Volumes/AUVCTD/missionnetcdfs/2018/2018337/2018.337.00 done. INFO 2025-10-20 22:18:57,025 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2018.337.00/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2018/2018337/2018.337.00 done. INFO 2025-10-20 22:18:57,025 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-10-20 22:18:57,025 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2018.337.00/i2map_2018.337.00_processing.log /Volumes/AUVCTD/surveys/2018/netcdf