INFO 2025-10-20 22:07:33,979 process.py process_mission():429 [1] commandline = /src/data/process_i2map.py -v --noinput --start_year 2018 --end_year 2018 --start_yd 1 --end_yd 365 --num_cores 1 --clobber INFO 2025-10-20 22:07:33,979 process.py process_mission():449 [1] Processing i2map mission 2018.025.00 by user docker_user on host 6ad284762e9a INFO 2025-10-20 22:07:33,979 process.py download_process():165 [1] Download and processing steps for 2018.025.00 INFO 2025-10-20 22:07:33,979 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/M3/master/i2MAP/2018/01/20180125/2018.025.00 INFO 2025-10-20 22:07:33,980 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/M3/master/i2MAP/2018/01/20180125/2018.025.00 to /data/auv_data/i2map/missionlogs/2018.025.00 INFO 2025-10-20 22:07:34,362 logs2netcdfs.py download_process_logs():779 [1] Processing mission: i2map 2018.025.00 INFO 2025-10-20 22:07:34,362 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/i2map/missionlogs/2018.025.00/gps.log (491252 bytes) INFO 2025-10-20 22:07:34,450 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/i2map/missionlogs/2018.025.00/navigation.log (30014684 bytes) INFO 2025-10-20 22:07:36,711 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/i2map/missionlogs/2018.025.00/parosci.log (8335334 bytes) INFO 2025-10-20 22:07:37,385 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/i2map/missionlogs/2018.025.00/seabird25p.log (16962466 bytes) INFO 2025-10-20 22:07:38,496 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/i2map/missionlogs/2018.025.00/seabird25p.log: [1] INFO 2025-10-20 22:07:38,551 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/i2map/missionlogs/2018.025.00/tailCone.log (4243979 bytes) WARNING 2025-10-20 22:07:38,922 logs2netcdfs.py _create_variable():536 [1] rudderCurrent: shape mismatch: objects cannot be broadcast to a single shape. Mismatch is between arg 0 with shape (88406,) and arg 1 with shape (88405,). INFO 2025-10-20 22:07:38,922 logs2netcdfs.py _create_variable():537 [1] len(data) (88405) does not match shape of rudderCurrent.shape[0] (88406) WARNING 2025-10-20 22:07:38,922 logs2netcdfs.py _create_variable():544 [1] rudderCurrent data is short by one, appending the last value: 0 WARNING 2025-10-20 22:07:38,929 logs2netcdfs.py _create_variable():536 [1] propCurrent1: shape mismatch: objects cannot be broadcast to a single shape. Mismatch is between arg 0 with shape (88406,) and arg 1 with shape (88405,). INFO 2025-10-20 22:07:38,929 logs2netcdfs.py _create_variable():537 [1] len(data) (88405) does not match shape of propCurrent1.shape[0] (88406) WARNING 2025-10-20 22:07:38,929 logs2netcdfs.py _create_variable():544 [1] propCurrent1 data is short by one, appending the last value: 0.31178656220436096 WARNING 2025-10-20 22:07:38,936 logs2netcdfs.py _create_variable():536 [1] propCurrent2: shape mismatch: objects cannot be broadcast to a single shape. Mismatch is between arg 0 with shape (88406,) and arg 1 with shape (88405,). INFO 2025-10-20 22:07:38,936 logs2netcdfs.py _create_variable():537 [1] len(data) (88405) does not match shape of propCurrent2.shape[0] (88406) WARNING 2025-10-20 22:07:38,936 logs2netcdfs.py _create_variable():544 [1] propCurrent2 data is short by one, appending the last value: 0 WARNING 2025-10-20 22:07:38,942 logs2netcdfs.py _create_variable():536 [1] propRpm: shape mismatch: objects cannot be broadcast to a single shape. Mismatch is between arg 0 with shape (88406,) and arg 1 with shape (88405,). INFO 2025-10-20 22:07:38,942 logs2netcdfs.py _create_variable():537 [1] len(data) (88405) does not match shape of propRpm.shape[0] (88406) WARNING 2025-10-20 22:07:38,942 logs2netcdfs.py _create_variable():544 [1] propRpm data is short by one, appending the last value: 0 WARNING 2025-10-20 22:07:38,948 logs2netcdfs.py _create_variable():536 [1] elevatorAngle: shape mismatch: objects cannot be broadcast to a single shape. Mismatch is between arg 0 with shape (88406,) and arg 1 with shape (88405,). INFO 2025-10-20 22:07:38,948 logs2netcdfs.py _create_variable():537 [1] len(data) (88405) does not match shape of elevatorAngle.shape[0] (88406) WARNING 2025-10-20 22:07:38,948 logs2netcdfs.py _create_variable():544 [1] elevatorAngle data is short by one, appending the last value: -0.05106901004910469 WARNING 2025-10-20 22:07:38,955 logs2netcdfs.py _create_variable():536 [1] rudderAngle: shape mismatch: objects cannot be broadcast to a single shape. Mismatch is between arg 0 with shape (88406,) and arg 1 with shape (88405,). INFO 2025-10-20 22:07:38,955 logs2netcdfs.py _create_variable():537 [1] len(data) (88405) does not match shape of rudderAngle.shape[0] (88406) WARNING 2025-10-20 22:07:38,956 logs2netcdfs.py _create_variable():544 [1] rudderAngle data is short by one, appending the last value: -0.19055849313735962 WARNING 2025-10-20 22:07:38,962 logs2netcdfs.py _create_variable():536 [1] propPwm: shape mismatch: objects cannot be broadcast to a single shape. Mismatch is between arg 0 with shape (88406,) and arg 1 with shape (88405,). INFO 2025-10-20 22:07:38,962 logs2netcdfs.py _create_variable():537 [1] len(data) (88405) does not match shape of propPwm.shape[0] (88406) WARNING 2025-10-20 22:07:38,962 logs2netcdfs.py _create_variable():544 [1] propPwm data is short by one, appending the last value: 0 WARNING 2025-10-20 22:07:38,968 logs2netcdfs.py _create_variable():536 [1] propTemp: shape mismatch: objects cannot be broadcast to a single shape. Mismatch is between arg 0 with shape (88406,) and arg 1 with shape (88405,). INFO 2025-10-20 22:07:38,968 logs2netcdfs.py _create_variable():537 [1] len(data) (88405) does not match shape of propTemp.shape[0] (88406) WARNING 2025-10-20 22:07:38,968 logs2netcdfs.py _create_variable():544 [1] propTemp data is short by one, appending the last value: 0 INFO 2025-10-20 22:07:39,079 logs2netcdfs.py download_process_logs():807 [1] Time to process: 4.72 seconds INFO 2025-10-20 22:07:39,079 process.py calibrate():227 [1] Calibration steps for 2018.025.00 INFO 2025-10-20 22:07:39,239 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-10-20 22:07:39,241 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-10-20 22:07:39,755 calibrate.py _nudge_pos():1806 [1] 87: 0.130 0.0028804 0.0180417 52639 175.46 2.439 19.054 2018-01-25T20:42:51.478991104 INFO 2025-10-20 22:07:44,871 calibrate.py _nudge_pos():1806 [1] 632: 0.180 -0.0001569 -0.0000990 435 1.45 -16.115 -12.687 2018-01-25T20:53:22.475764736 INFO 2025-10-20 22:07:45,192 calibrate.py _nudge_pos():1806 [1] 666: 0.180 -0.0000138 -0.0000132 45 0.15 -13.915 -16.664 2018-01-25T20:54:05.482818560 INFO 2025-10-20 22:07:45,897 calibrate.py _nudge_pos():1806 [1] 741: 0.190 -0.0000107 -0.0000861 20 0.06 -25.023 -252.001 2018-01-25T20:55:31.476927488 INFO 2025-10-20 22:07:45,964 calibrate.py _nudge_pos():1806 [1] 748: 0.200 -0.0002718 -0.0002586 740 2.46 -16.392 -19.451 2018-01-25T20:58:06.476309248 INFO 2025-10-20 22:07:47,923 calibrate.py _nudge_pos():1806 [1] 955: 0.010 -0.0000786 -0.0000438 15 0.05 -250.231 -173.771 2018-01-25T21:01:47.681155840 INFO 2025-10-20 22:07:48,395 calibrate.py _nudge_pos():1806 [1] 1005: 0.020 -0.0002448 0.0000797 15 0.05 -779.491 316.529 2018-01-25T21:02:41.677456896 INFO 2025-10-20 22:07:50,095 calibrate.py _nudge_pos():1806 [1] 1186: 0.030 -0.0004921 -0.0003417 210 0.70 -104.922 -90.863 2018-01-25T21:06:32.681632000 INFO 2025-10-20 22:07:50,559 calibrate.py _nudge_pos():1806 [1] 1235: 0.040 -0.0005511 -0.0004131 15 0.05 -1754.588 -1640.260 2018-01-25T21:07:23.678138368 INFO 2025-10-20 22:07:50,795 calibrate.py _nudge_pos():1806 [1] 1260: 0.040 -0.0006282 -0.0004313 25 0.08 -1166.641 -999.103 2018-01-25T21:07:56.675878144 INFO 2025-10-20 22:07:51,243 calibrate.py _nudge_pos():1806 [1] 1307: 0.040 -0.0006843 -0.0004715 50 0.16 -622.472 -534.971 2018-01-25T21:08:55.681835776 INFO 2025-10-20 22:07:58,112 calibrate.py _nudge_pos():1806 [1] 2035: 0.090 0.0000221 -0.0000088 15 0.05 70.342 -35.097 2018-01-25T21:21:05.681827328 INFO 2025-10-20 22:08:37,842 calibrate.py _nudge_pos():1806 [1] 6187: 0.200 0.0004723 0.0000739 54 0.18 397.192 77.476 2018-01-25T22:30:27.876697600 INFO 2025-10-20 22:08:43,887 calibrate.py _nudge_pos():1862 [1] 6771: - - - 4 0.01 - - INFO 2025-10-20 22:08:43,887 calibrate.py _nudge_pos():1868 [1] Points in final series = 87948 INFO 2025-10-20 22:08:51,709 calibrate.py _read_oxy_coeffs():1195 [1] Looking for calibration file for O2 sensor serial number 2935 INFO 2025-10-20 22:08:51,712 calibrate.py _read_oxy_coeffs():1219 [1] Executing: find "/Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files" -name "2935" INFO 2025-10-20 22:08:52,612 calibrate.py _read_oxy_coeffs():1238 [1] Found calibration date dirs: 2014_Nov 2021_Mar 2022_Apr WARNING 2025-10-20 22:08:52,616 calibrate.py _cal_date_xml_files():1081 [1] Found 4 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/2935/2014_Nov INFO 2025-10-20 22:08:52,616 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-20 22:08:52,622 calibrate.py _cal_date_xml_files():1081 [1] Found 4 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/2935/2021_Mar INFO 2025-10-20 22:08:52,622 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} WARNING 2025-10-20 22:08:52,626 calibrate.py _cal_date_xml_files():1081 [1] Found 4 xml files in /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/2935/2022_Apr INFO 2025-10-20 22:08:52,626 calibrate.py _cal_date_xml_files():1087 [1] {xml_files} INFO 2025-10-20 22:08:52,633 calibrate.py _read_oxy_coeffs():1247 [1] File /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/2935/2022_Apr/Oxygen_SBE43_2935.xml has CalibrationDate 2022-03-22 00:00:00+00:00 INFO 2025-10-20 22:08:52,633 calibrate.py _read_oxy_coeffs():1253 [1] Breaking from loop as /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/2935/2022_Apr/Oxygen_SBE43_2935.xml is after 2018.025.00 with mission_start=2018-01-25T17:46:11.625130752 INFO 2025-10-20 22:08:52,633 calibrate.py _read_oxy_coeffs():1270 [1] File /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/2935/2022_Apr/Oxygen_SBE43_2935.xml is the first calibration file, but is after 2018.025.00 with mission_start=2018-01-25T17:46:11.625130752 INFO 2025-10-20 22:08:55,210 calibrate.py _calibrated_oxygen():2513 [1] dissolvedO2: parsed from /Volumes/DMO/MDUC_CORE_CTD_200103/Calibration Files/SBE-43/2935/2022_Apr/Oxygen_SBE43_2935.xml file: {'Soc': 0.42595, 'offset': -0.5339, 'A': -0.0041113, 'B': 0.00020802, 'C': -3.0027e-06, 'D0': 2.5826, 'D1': 0.000192634, 'D2': -0.0464803, 'E': 0.036, 'Tau20': 1.09, 'H1': -0.033, 'H2': 5000.0, 'H3': 1450.0} INFO 2025-10-20 22:08:56,231 calibrate.py _geometric_depth_correction():3423 [1] seabird25p: d_beg_time_diff: 7 seconds, d_end_time_diff: 0 seconds INFO 2025-10-20 22:08:57,217 calibrate.py _geometric_depth_correction():3423 [1] seabird25p: d_beg_time_diff: 7 seconds, d_end_time_diff: 0 seconds INFO 2025-10-20 22:08:57,219 calibrate.py _ctd_process():2919 [1] Performing range checking of ['seabird25p_salinity'] in 2018.025.00/seabird25p.nc WARNING 2025-10-20 22:08:57,232 calibrate.py _range_qc_combined_nc():890 [1] More than 500 (141336) seabird25p_salinity values found outside of range. This may indicate a problem with the seabird25p data. INFO 2025-10-20 22:08:57,232 calibrate.py _range_qc_combined_nc():898 [1] Setting 141336 seabird25p_salinity values to NaN INFO 2025-10-20 22:08:57,233 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('seabird25p_salinity', Range(min=30, max=40))] INFO 2025-10-20 22:08:57,233 calibrate.py _range_qc_combined_nc():936 [1] Done range checking seabird25p INFO 2025-10-20 22:08:57,303 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/i2map/missionnetcdfs/2018.025.00/i2map_2018.025.00_cal.nc INFO 2025-10-20 22:09:07,248 calibrate.py write_netcdf():3512 [1] Data variables written: depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, seabird25p_conductivity, seabird25p_conductivity_onboard, seabird25p_depth, seabird25p_dissolvedO2, seabird25p_flow1, seabird25p_oxygen_mll, seabird25p_oxygen_umolkg, seabird25p_salinity, seabird25p_salinity_onboard, seabird25p_temperature, seabird25p_temperature_onboard, seabird25p_time, tailcone_propRpm, tailcone_time, time INFO 2025-10-20 22:09:07,252 process.py align():251 [1] Alignment steps for 2018.025.00 INFO 2025-10-20 22:09:07,274 align.py process_cal():139 [1] Processing i2map_2018.025.00_cal.nc from /data/auv_data/i2map/missionnetcdfs/2018.025.00 INFO 2025-10-20 22:09:07,300 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-10-20 22:09:07,303 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-10-20 22:09:07,366 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-10-20 22:09:07,370 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-10-20 22:09:07,430 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-10-20 22:09:07,435 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-10-20 22:09:07,471 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-10-20 22:09:07,471 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-10-20 22:09:07,494 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-10-20 22:09:07,499 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-10-20 22:09:07,564 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2018.025.00_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-20 22:09:07,570 align.py process_cal():249 [1] seabird25p_temperature: instrument_sample_rate_hz = 7.99 INFO 2025-10-20 22:09:07,654 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2018.025.00_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-20 22:09:07,660 align.py process_cal():249 [1] seabird25p_conductivity: instrument_sample_rate_hz = 7.99 INFO 2025-10-20 22:09:07,742 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2018.025.00_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-20 22:09:07,748 align.py process_cal():249 [1] seabird25p_salinity: instrument_sample_rate_hz = 7.99 INFO 2025-10-20 22:09:07,830 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2018.025.00_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-20 22:09:07,836 align.py process_cal():249 [1] seabird25p_temperature_onboard: instrument_sample_rate_hz = 7.99 INFO 2025-10-20 22:09:07,920 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2018.025.00_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-20 22:09:07,926 align.py process_cal():249 [1] seabird25p_conductivity_onboard: instrument_sample_rate_hz = 7.99 INFO 2025-10-20 22:09:08,008 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2018.025.00_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-20 22:09:08,015 align.py process_cal():249 [1] seabird25p_salinity_onboard: instrument_sample_rate_hz = 7.99 INFO 2025-10-20 22:09:08,098 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2018.025.00_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-20 22:09:08,104 align.py process_cal():249 [1] seabird25p_dissolvedO2: instrument_sample_rate_hz = 7.99 INFO 2025-10-20 22:09:08,188 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2018.025.00_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-20 22:09:08,194 align.py process_cal():249 [1] seabird25p_oxygen_mll: instrument_sample_rate_hz = 7.99 INFO 2025-10-20 22:09:08,278 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2018.025.00_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-20 22:09:08,284 align.py process_cal():249 [1] seabird25p_oxygen_umolkg: instrument_sample_rate_hz = 7.99 INFO 2025-10-20 22:09:08,368 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2018.025.00_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-20 22:09:08,374 align.py process_cal():249 [1] seabird25p_flow1: instrument_sample_rate_hz = 7.99 INFO 2025-10-20 22:09:08,458 align.py process_cal():206 [1] Using pitch corrected seabird25p_depth: Variable depth_filtdepth from i2map_2018.025.00_cal.nc linearly interpolated to seabird25p_time and corrected for pitch using SensorOffset(x=4.04, y=0.0) INFO 2025-10-20 22:09:08,463 align.py process_cal():249 [1] seabird25p_depth: instrument_sample_rate_hz = 7.99 INFO 2025-10-20 22:09:08,557 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 5.00 INFO 2025-10-20 22:09:08,599 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/i2map/missionnetcdfs/2018.025.00/i2map_2018.025.00_align.nc INFO 2025-10-20 22:09:08,647 align.py write_netcdf():342 [1] Data variables written: navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, seabird25p_conductivity, seabird25p_conductivity_onboard, seabird25p_depth, seabird25p_dissolvedO2, seabird25p_flow1, seabird25p_latitude, seabird25p_longitude, seabird25p_oxygen_mll, seabird25p_oxygen_umolkg, seabird25p_salinity, seabird25p_salinity_onboard, seabird25p_temperature, seabird25p_temperature_onboard, seabird25p_time, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-10-20 22:09:08,649 process.py resample():273 [1] Resampling steps for 2018.025.00 INFO 2025-10-20 22:09:08,650 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-10-20 22:09:08,665 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/i2map/missionnetcdfs/2018.025.00/i2map_2018.025.00_align.nc mission netCDF file INFO 2025-10-20 22:09:08,669 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/i2map/missionnetcdfs/2018.025.00/i2map_2018.025.00_align.nc mission netCDF file INFO 2025-10-20 22:09:08,671 resample.py get_mission_start_end():1145 [1] navigation: 2018-01-25T17:46:38.173312000 to 2018-01-25T22:40:51.873950720 (0 days 00:00:00.189987072 before mission_end) INFO 2025-10-20 22:09:08,673 resample.py get_mission_start_end():1145 [1] seabird25p: 2018-01-25T17:46:11.625130752 to 2018-01-25T22:40:52.063937792 (0 days 00:00:00 before mission_end) INFO 2025-10-20 22:09:08,675 resample.py get_mission_start_end():1145 [1] tailcone : 2018-01-25T17:45:59.635951872 to 2018-01-25T22:40:41.234679552 (0 days 00:00:10.829258240 before mission_end) INFO 2025-10-20 22:09:08,676 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/i2map/missionnetcdfs/2018.025.00/i2map_2018.025.00_align.nc mission netCDF file INFO 2025-10-20 22:09:08,677 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-10-20 22:09:08,929 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-10-20 22:09:08,963 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-10-20 22:09:08,995 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-10-20 22:09:09,027 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-10-20 22:09:09,072 resample.py resample_variable():1031 [1] Resampling seabird25p_temperature with frequency 1S following 3 point median filter INFO 2025-10-20 22:09:09,118 resample.py resample_variable():1031 [1] Resampling seabird25p_conductivity with frequency 1S following 3 point median filter INFO 2025-10-20 22:09:09,413 resample.py resample_variable():1031 [1] Resampling seabird25p_salinity with frequency 1S following 3 point median filter INFO 2025-10-20 22:09:09,461 resample.py resample_variable():1031 [1] Resampling seabird25p_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-10-20 22:09:09,513 resample.py resample_variable():1031 [1] Resampling seabird25p_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-10-20 22:09:09,566 resample.py resample_variable():1031 [1] Resampling seabird25p_salinity_onboard with frequency 1S following 3 point median filter INFO 2025-10-20 22:09:09,618 resample.py resample_variable():1031 [1] Resampling seabird25p_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-10-20 22:09:09,672 resample.py resample_variable():1031 [1] Resampling seabird25p_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-10-20 22:09:09,725 resample.py resample_variable():1031 [1] Resampling seabird25p_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-10-20 22:09:09,778 resample.py resample_variable():1031 [1] Resampling seabird25p_flow1 with frequency 1S following 3 point median filter INFO 2025-10-20 22:09:09,814 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-10-20 22:09:09,978 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/i2map/missionnetcdfs/2018.025.00/i2map_2018.025.00_1S.nc INFO 2025-10-20 22:09:09,980 process.py archive():337 [1] Archiving steps for 2018.025.00 INFO 2025-10-20 22:09:09,980 process.py archive():347 [1] nc_file_base = /data/auv_data/i2map/missionnetcdfs/2018.025.00/i2map_2018.025.00, BASE_PATH = /data/auv_data INFO 2025-10-20 22:09:09,981 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/i2map/missionnetcdfs/2018.025.00/i2map_2018.025.00 files to /Volumes/AUVCTD/surveys/2018/netcdf INFO 2025-10-20 22:09:09,984 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2018/netcdf/i2map_2018.025.00_1S.nc INFO 2025-10-20 22:09:10,000 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2018.025.00/i2map_2018.025.00_1S.nc /Volumes/AUVCTD/surveys/2018/netcdf done. INFO 2025-10-20 22:09:10,001 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2018/netcdf/i2map_2018.025.00_cal.nc INFO 2025-10-20 22:09:10,088 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2018.025.00/i2map_2018.025.00_cal.nc /Volumes/AUVCTD/surveys/2018/netcdf done. INFO 2025-10-20 22:09:10,089 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2018/netcdf/i2map_2018.025.00_align.nc INFO 2025-10-20 22:09:10,154 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2018.025.00/i2map_2018.025.00_align.nc /Volumes/AUVCTD/surveys/2018/netcdf done. INFO 2025-10-20 22:09:10,166 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2018.025.00/gps.nc /Volumes/AUVCTD/missionnetcdfs/2018/2018025/2018.025.00 done. INFO 2025-10-20 22:09:10,253 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2018.025.00/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2018/2018025/2018.025.00 done. INFO 2025-10-20 22:09:10,281 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2018.025.00/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2018/2018025/2018.025.00 done. INFO 2025-10-20 22:09:10,329 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2018.025.00/seabird25p.nc /Volumes/AUVCTD/missionnetcdfs/2018/2018025/2018.025.00 done. INFO 2025-10-20 22:09:10,350 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2018.025.00/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2018/2018025/2018.025.00 done. INFO 2025-10-20 22:09:10,351 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-10-20 22:09:10,351 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/i2map/missionnetcdfs/2018.025.00/i2map_2018.025.00_processing.log /Volumes/AUVCTD/surveys/2018/netcdf