INFO 2025-06-26 23:38:01,566 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2015 --end_year 2025 --num_cores 1 -v --noinput --clobber INFO 2025-06-26 23:38:01,566 process.py process_mission():434 [1] dorado_info[mission]["comment"] = MBTS mission - Overnight diamond in Monterey Bay - aborted after M1 due to a 'frozen' battery, but good Gulps Use ctd2 per Monique - 29 July 2021 QC note: Best CTD is ctd2 - ctdToUse = ctd1 INFO 2025-06-26 23:38:01,566 process.py process_mission():449 [1] Processing Monterey Bay Diamond mission 2018.079.00 by user docker_user on host 355841a7028c INFO 2025-06-26 23:38:01,566 process.py download_process():165 [1] Download and processing steps for 2018.079.00 INFO 2025-06-26 23:38:01,567 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2018/2018079/2018.079.00 INFO 2025-06-26 23:38:01,567 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2018/2018079/2018.079.00 to /data/auv_data/dorado/missionlogs/2018.079.00 INFO 2025-06-26 23:38:05,876 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2018.079.00 INFO 2025-06-26 23:38:05,876 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2018.079.00/ctdDriver.log (13398246 bytes) INFO 2025-06-26 23:38:06,844 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2018.079.00/ctdDriver2.log (13404767 bytes) INFO 2025-06-26 23:38:07,834 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2018.079.00/gps.log (234356 bytes) INFO 2025-06-26 23:38:07,867 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2018.079.00/hydroscatlog.log (11831086 bytes) INFO 2025-06-26 23:38:09,070 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/dorado/missionlogs/2018.079.00/hydroscatlog.log: [ 73 77 207 ... 140253 140277 140457] INFO 2025-06-26 23:38:09,116 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2018.079.00/navigation.log (52087926 bytes) INFO 2025-06-26 23:38:12,994 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2018.079.00/isuslog.log (878421 bytes) INFO 2025-06-26 23:38:13,080 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2018.079.00/parosci.log (16583846 bytes) INFO 2025-06-26 23:38:14,487 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2018.079.00/tailCone.log (8454235 bytes) INFO 2025-06-26 23:38:15,538 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2018.079.00/biolume.log (9838466 bytes) INFO 2025-06-26 23:38:16,487 logs2netcdfs.py write_variables():575 [1] Expanding original timeTag to time60Hz variable for raw data INFO 2025-06-26 23:38:16,940 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/dorado/missionlogs/2018.079.00/biolume.log: [ 1637 1973 2827 7114 9466 10429 12119 13232 13577 13896 15894 16638 16894 19224 20130 21359 22037 26653 27368 27421 28362 31124 31688 31827 34169 34252 34528] INFO 2025-06-26 23:38:16,980 logs2netcdfs.py download_process_logs():807 [1] Time to process: 11.10 seconds INFO 2025-06-26 23:38:16,981 process.py download_process():198 [1] Processing file /data/auv_data/dorado/missionlogs/2018.079.00/lopc.bin (31726896 bytes) INFO 2025-06-26 23:38:16,981 lopcToNetCDF.py main():2297 [1] Processing begun: Thu Jun 26 23:38:16 2025 INFO 2025-06-26 23:38:16,981 lopcToNetCDF.py constructTimestampList():1296 [1] parosci_nc = /data/auv_data/dorado/missionnetcdfs/2018.079.00/parosci.nc INFO 2025-06-26 23:38:16,981 lopcToNetCDF.py constructTimestampList():1297 [1] Using NetCDF4 to get start and end epoch seconds for this mission from this URL: INFO 2025-06-26 23:38:16,981 lopcToNetCDF.py constructTimestampList():1300 [1] /data/auv_data/dorado/missionnetcdfs/2018.079.00/parosci.nc INFO 2025-06-26 23:38:16,984 lopcToNetCDF.py constructTimestampList():1317 [1] From associated parosci.nc file: sensor_on_time = 1521570098.3, sensor_off_time = 1521605323.8 INFO 2025-06-26 23:38:16,984 lopcToNetCDF.py constructTimestampList():1322 [1] Duration is 35225 seconds. Expecting to read 70450 L frames from the lopc.bin file. INFO 2025-06-26 23:38:16,984 lopcToNetCDF.py constructTimestampList():1330 [1] recCount not passed in, assuming we'll have 70450 records from the lopc.bin file. INFO 2025-06-26 23:38:17,401 lopcToNetCDF.py main():2321 [1] Examined sibling parosci.nc file to find startTime = 2018-03-20 18:21:38 Z and endTime = 2018-03-21 04:08:43 Z with 70450 records expected to be read from lopc.bin INFO 2025-06-26 23:38:17,401 lopcToNetCDF.py unpackLOPCbin():723 [1] >>> Unpacking LOPC data from /data/auv_data/dorado/missionlogs/2018.079.00/lopc.bin INFO 2025-06-26 23:38:17,401 lopcToNetCDF.py unpackLOPCbin():724 [1] >>> Will write to NetCDF file /data/auv_data/dorado/missionnetcdfs/2018.079.00/lopc.nc INFO 2025-06-26 23:38:17,401 lopcToNetCDF.py openNetCDFFile():1861 [1] Will output NetCDF file to /data/auv_data/dorado/missionnetcdfs/2018.079.00/lopc.nc INFO 2025-06-26 23:38:17,402 lopcToNetCDF.py openNetCDFFile():1887 [1] missionName = 2018.079.00 INFO 2025-06-26 23:38:17,402 lopcToNetCDF.py openNetCDFFile():1910 [1] Writing bin axis for len(self.dataStructure['binSizeList']) = 994 INFO 2025-06-26 23:38:17,444 lopcToNetCDF.py unpackLOPCbin():951 [1] L Frames sample M Frames ShortLFrame LBeforeMEnd MBeforeLEnd UnknownFrame Garbled L INFO 2025-06-26 23:38:17,444 lopcToNetCDF.py unpackLOPCbin():969 [1] Count Count Count Error Error Error Error Error INFO 2025-06-26 23:38:17,444 lopcToNetCDF.py unpackLOPCbin():987 [1] -------- -------- -------- ----------- ----------- ----------- ----------- ------------ INFO 2025-06-26 23:38:23,236 lopcToNetCDF.py unpackLOPCbin():1013 [1] 10000 10000 14677 0 0 0 0 0 5.8 seconds, last L Frame: 70450 INFO 2025-06-26 23:38:30,955 lopcToNetCDF.py unpackLOPCbin():1013 [1] 20000 20002 34337 0 0 1 0 1 7.7 seconds, last L Frame: 70450 ERROR 2025-06-26 23:38:36,534 process.py download_process():223 [1] UnexpectedAreaOfCode: Encountered unexpected area of code - lopc.nc file is probably corrupt INFO 2025-06-26 23:38:36,536 process.py calibrate():227 [1] Calibration steps for 2018.079.00 INFO 2025-06-26 23:38:36,806 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-06-26 23:38:36,808 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-06-26 23:38:37,433 calibrate.py _nudge_pos():1806 [1] 94: 0.180 -0.0004641 0.0004139 2115 7.05 -9.773 10.885 2018-03-20T18:30:08.125395200 INFO 2025-06-26 23:38:39,444 calibrate.py _nudge_pos():1806 [1] 302: 0.070 -0.0006738 0.0016393 4905 16.35 -6.116 18.582 2018-03-20T18:49:56.323997952 INFO 2025-06-26 23:38:40,815 calibrate.py _nudge_pos():1806 [1] 442: 0.030 0.0027893 -0.0007146 10646 35.48 11.668 -3.732 2018-03-20T19:27:44.518616064 INFO 2025-06-26 23:38:43,153 calibrate.py _nudge_pos():1806 [1] 683: 0.170 0.0009094 -0.0000756 9060 30.20 4.471 -0.464 2018-03-20T20:01:56.528043776 INFO 2025-06-26 23:38:45,385 calibrate.py _nudge_pos():1806 [1] 912: 0.140 0.0019352 -0.0002221 9605 32.01 8.978 -1.286 2018-03-20T20:37:45.720814080 INFO 2025-06-26 23:38:47,596 calibrate.py _nudge_pos():1806 [1] 1139: 0.090 0.0013300 -0.0000650 9151 30.50 6.478 -0.395 2018-03-20T21:12:02.919886080 INFO 2025-06-26 23:38:47,626 calibrate.py _nudge_pos():1806 [1] 1142: 0.080 -0.0000775 0.0000833 180 0.60 -19.299 25.866 2018-03-20T21:12:40.927282688 INFO 2025-06-26 23:38:49,623 calibrate.py _nudge_pos():1806 [1] 1342: 0.010 0.0018958 0.0002265 15162 50.54 5.575 0.831 2018-03-20T22:06:32.325916416 INFO 2025-06-26 23:38:50,415 calibrate.py _nudge_pos():1806 [1] 1421: 0.020 0.0000022 -0.0000033 11 0.03 9.918 -18.363 2018-03-20T22:07:52.320436480 INFO 2025-06-26 23:38:50,961 calibrate.py _nudge_pos():1806 [1] 1472: 0.130 -0.0000031 0.0000038 15 0.05 -9.739 15.102 2018-03-20T22:08:48.126613504 INFO 2025-06-26 23:38:50,991 calibrate.py _nudge_pos():1806 [1] 1475: 0.010 -0.0000016 0.0000006 11 0.03 -7.341 3.276 2018-03-20T22:08:52.326326016 INFO 2025-06-26 23:38:51,924 calibrate.py _nudge_pos():1806 [1] 1571: 0.070 0.0013129 0.0006744 8441 28.13 6.937 4.442 2018-03-20T22:38:39.323908096 INFO 2025-06-26 23:38:53,619 calibrate.py _nudge_pos():1806 [1] 1743: 0.080 -0.0000030 0.0000080 15 0.05 -9.615 31.928 2018-03-20T22:41:36.321782784 INFO 2025-06-26 23:38:54,046 calibrate.py _nudge_pos():1806 [1] 1787: 0.050 0.0077970 0.0019235 11616 38.72 29.928 9.206 2018-03-20T23:21:02.519687168 INFO 2025-06-26 23:38:54,352 calibrate.py _nudge_pos():1806 [1] 1818: 0.050 -0.0000057 0.0000100 40 0.13 -6.520 14.189 2018-03-20T23:21:41.527014912 INFO 2025-06-26 23:38:54,501 calibrate.py _nudge_pos():1806 [1] 1833: 0.060 -0.0000897 -0.0001012 40 0.13 -102.551 -144.244 2018-03-20T23:22:04.525439488 INFO 2025-06-26 23:38:54,511 calibrate.py _nudge_pos():1806 [1] 1834: 0.050 0.0000152 0.0000346 35 0.11 19.868 56.501 2018-03-20T23:22:11.524960000 INFO 2025-06-26 23:38:55,842 calibrate.py _nudge_pos():1806 [1] 1969: 0.040 0.0099241 0.0034104 12446 41.48 35.544 15.234 2018-03-21T00:05:57.725053184 INFO 2025-06-26 23:38:57,824 calibrate.py _nudge_pos():1806 [1] 2168: 0.060 -0.0000072 0.0000194 15 0.05 -23.057 76.871 2018-03-21T00:09:20.721146880 INFO 2025-06-26 23:38:58,013 calibrate.py _nudge_pos():1806 [1] 2187: 0.040 0.0093972 0.0046862 11991 39.97 34.927 21.727 2018-03-21T00:49:37.925557248 INFO 2025-06-26 23:38:58,282 calibrate.py _nudge_pos():1806 [1] 2214: 0.040 0.0094294 0.0047014 70 0.23 6090.378 3787.920 2018-03-21T00:50:18.922748672 INFO 2025-06-26 23:39:00,583 calibrate.py _nudge_pos():1806 [1] 2444: 0.060 0.0002815 0.0002046 15 0.05 896.143 812.616 2018-03-21T00:54:15.926512640 INFO 2025-06-26 23:39:00,779 calibrate.py _nudge_pos():1806 [1] 2464: 0.060 -0.0000174 0.0000051 15 0.05 -55.377 20.331 2018-03-21T00:54:37.925005568 INFO 2025-06-26 23:39:01,946 calibrate.py _nudge_pos():1806 [1] 2582: 0.040 0.0093794 0.0058749 11776 39.25 35.489 27.735 2018-03-21T01:35:50.125648384 INFO 2025-06-26 23:39:02,987 calibrate.py _nudge_pos():1806 [1] 2685: 0.050 0.0002088 0.0002991 25 0.08 386.809 691.430 2018-03-21T01:37:41.128044032 INFO 2025-06-26 23:39:03,090 calibrate.py _nudge_pos():1806 [1] 2695: 0.050 0.0003871 0.0004462 35 0.11 507.283 729.602 2018-03-21T01:37:57.126948096 INFO 2025-06-26 23:39:03,141 calibrate.py _nudge_pos():1806 [1] 2700: 0.050 0.0002059 0.0003274 14 0.04 705.557 1400.098 2018-03-21T01:38:05.126400256 INFO 2025-06-26 23:39:03,162 calibrate.py _nudge_pos():1806 [1] 2702: 0.050 -0.0011047 -0.0011376 20 0.06 -2590.556 -3328.643 2018-03-21T01:38:10.126057728 INFO 2025-06-26 23:39:03,264 calibrate.py _nudge_pos():1806 [1] 2712: 0.050 -0.0015206 -0.0006729 170 0.56 -400.910 -221.352 2018-03-21T01:38:54.123043584 INFO 2025-06-26 23:39:03,284 calibrate.py _nudge_pos():1806 [1] 2714: 0.060 0.0055819 0.0062929 13971 46.57 17.798 25.041 2018-03-21T02:25:29.321559552 INFO 2025-06-26 23:39:03,730 calibrate.py _nudge_pos():1806 [1] 2758: 0.070 0.0056806 0.0064023 650 2.16 389.877 548.380 2018-03-21T02:28:23.319639808 INFO 2025-06-26 23:39:03,834 calibrate.py _nudge_pos():1806 [1] 2768: 0.090 0.0057956 0.0066842 1179 3.93 218.958 315.158 2018-03-21T02:32:28.322855936 INFO 2025-06-26 23:39:03,856 calibrate.py _nudge_pos():1806 [1] 2770: 0.090 0.0058065 0.0067333 15 0.05 18475.758 26737.732 2018-03-21T02:32:32.322581760 INFO 2025-06-26 23:39:03,878 calibrate.py _nudge_pos():1806 [1] 2772: 0.100 0.0002082 0.0001600 785 2.61 11.829 11.342 2018-03-21T02:35:10.321758208 INFO 2025-06-26 23:39:04,044 calibrate.py _nudge_pos():1806 [1] 2788: 0.100 0.0000075 -0.0000502 15 0.05 23.933 -199.264 2018-03-21T02:35:28.320525056 INFO 2025-06-26 23:39:04,397 calibrate.py _nudge_pos():1806 [1] 2823: 0.060 0.0051947 0.0066332 10786 35.95 21.451 34.190 2018-03-21T03:11:59.520417792 INFO 2025-06-26 23:39:04,449 calibrate.py _nudge_pos():1806 [1] 2828: 0.070 0.0051440 0.0078504 95 0.31 2437.315 4642.928 2018-03-21T03:12:22.518842112 INFO 2025-06-26 23:39:04,500 calibrate.py _nudge_pos():1806 [1] 2833: 0.060 0.0053131 0.0067204 160 0.53 1487.846 2349.025 2018-03-21T03:12:58.526375424 INFO 2025-06-26 23:39:04,573 calibrate.py _nudge_pos():1806 [1] 2840: 0.070 0.0055017 0.0070435 580 1.93 423.180 676.236 2018-03-21T03:15:01.527949312 INFO 2025-06-26 23:39:04,922 calibrate.py _nudge_pos():1806 [1] 2875: 0.080 0.0000813 0.0000482 140 0.46 26.051 19.277 2018-03-21T03:16:03.523702272 INFO 2025-06-26 23:39:05,499 calibrate.py _nudge_pos():1806 [1] 2932: 0.090 0.0000388 0.0000267 15 0.05 123.334 106.031 2018-03-21T03:17:03.519592192 INFO 2025-06-26 23:39:05,879 calibrate.py _nudge_pos():1806 [1] 2970: 0.080 0.0000203 -0.0000563 25 0.08 37.601 -130.300 2018-03-21T03:17:45.526714624 INFO 2025-06-26 23:39:06,340 calibrate.py _nudge_pos():1806 [1] 3015: 0.140 -0.0002883 0.0010207 3205 10.68 -4.008 17.710 2018-03-21T03:29:10.519789568 INFO 2025-06-26 23:39:07,277 calibrate.py _nudge_pos():1806 [1] 3109: 0.140 0.0000073 -0.0001373 55 0.18 5.985 -141.357 2018-03-21T03:30:54.522664704 INFO 2025-06-26 23:39:07,348 calibrate.py _nudge_pos():1806 [1] 3116: 0.150 -0.0000458 0.0001588 15 0.05 -145.828 630.529 2018-03-21T03:31:03.522048256 INFO 2025-06-26 23:39:08,344 calibrate.py _nudge_pos():1806 [1] 3214: 0.150 0.0000614 -0.0001508 20 0.06 144.032 -441.264 2018-03-21T03:32:45.525060352 INFO 2025-06-26 23:39:08,355 calibrate.py _nudge_pos():1806 [1] 3215: 0.150 0.0000003 0.0000448 20 0.06 0.649 131.067 2018-03-21T03:32:49.524786432 INFO 2025-06-26 23:39:08,366 calibrate.py _nudge_pos():1806 [1] 3216: 0.110 -0.0001037 0.0033719 10636 35.45 -0.434 17.625 2018-03-21T04:08:16.719063808 INFO 2025-06-26 23:39:08,636 calibrate.py _nudge_pos():1862 [1] 3205: - - - 0 0.00 - - INFO 2025-06-26 23:39:08,636 calibrate.py _nudge_pos():1868 [1] Points in final series = 175843 INFO 2025-06-26 23:39:27,416 calibrate.py _geometric_depth_correction():3423 [1] hs2: d_beg_time_diff: -2 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 23:39:28,800 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 36 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 23:39:29,821 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 36 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 23:39:29,824 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2018.079.00/ctd1.nc INFO 2025-06-26 23:39:29,825 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd1_salinity values to NaN INFO 2025-06-26 23:39:29,826 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-06-26 23:39:29,826 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1 INFO 2025-06-26 23:39:31,053 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 19 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 23:39:32,080 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 19 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 23:39:32,083 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2018.079.00/ctd2.nc INFO 2025-06-26 23:39:32,084 calibrate.py _range_qc_combined_nc():898 [1] Setting 10 ctd2_salinity values to NaN INFO 2025-06-26 23:39:32,084 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-06-26 23:39:32,085 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2 INFO 2025-06-26 23:39:32,138 calibrate.py _biolume_process():3128 [1] Checking for non-monotonic increasing time60hz INFO 2025-06-26 23:39:33,682 calibrate.py _biolume_process():3131 [1] Removing non-monotonic increasing time60hz at indices: [ 840 841 842 ... 2071737 2071738 2071739] INFO 2025-06-26 23:39:33,982 calibrate.py _geometric_depth_correction():3423 [1] biolume: d_beg_time_diff: -7 seconds, d_end_time_diff: -1 seconds ERROR 2025-06-26 23:40:07,157 calibrate.py process_logs():3542 [1] Error processing lopc: lopc has no time coordinate - likely an incomplete lopc.nc file in missionlogs/2018.079.00 ERROR 2025-06-26 23:40:07,157 calibrate.py process_logs():3542 [1] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2018.079.00 INFO 2025-06-26 23:40:07,291 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2018.079.00/dorado_2018.079.00_cal.nc INFO 2025-06-26 23:40:07,508 calibrate.py write_netcdf():3512 [1] Data variables written: biolume_avg_biolume, biolume_depth, biolume_flow, biolume_raw, biolume_time, biolume_time60hz, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_salinity_onboard, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_salinity_onboard, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, hs2_bbp420, hs2_bbp700, hs2_depth, hs2_fl700, hs2_time, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, tailcone_propRpm, tailcone_time, time INFO 2025-06-26 23:40:07,516 process.py align():251 [1] Alignment steps for 2018.079.00 INFO 2025-06-26 23:40:07,570 align.py process_cal():139 [1] Processing dorado_2018.079.00_cal.nc from /data/auv_data/dorado/missionnetcdfs/2018.079.00 INFO 2025-06-26 23:40:07,617 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 23:40:07,622 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 23:40:07,742 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 23:40:07,749 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 23:40:07,860 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 23:40:07,868 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 23:40:07,936 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-06-26 23:40:07,936 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-06-26 23:40:07,979 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 23:40:07,986 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 23:40:08,094 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2018.079.00_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 23:40:08,100 align.py process_cal():249 [1] hs2_bbp420: instrument_sample_rate_hz = 3.96 INFO 2025-06-26 23:40:08,195 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2018.079.00_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 23:40:08,201 align.py process_cal():249 [1] hs2_bbp700: instrument_sample_rate_hz = 3.96 INFO 2025-06-26 23:40:08,296 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2018.079.00_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 23:40:08,302 align.py process_cal():249 [1] hs2_fl700: instrument_sample_rate_hz = 3.96 INFO 2025-06-26 23:40:08,404 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2018.079.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 23:40:08,410 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 3.97 INFO 2025-06-26 23:40:08,508 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2018.079.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 23:40:08,514 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 3.97 INFO 2025-06-26 23:40:08,608 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2018.079.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 23:40:08,614 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 3.97 INFO 2025-06-26 23:40:08,710 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2018.079.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 23:40:08,716 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 3.97 INFO 2025-06-26 23:40:08,812 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2018.079.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 23:40:08,818 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 3.97 INFO 2025-06-26 23:40:08,915 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2018.079.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 23:40:08,921 align.py process_cal():249 [1] ctd1_salinity_onboard: instrument_sample_rate_hz = 3.97 INFO 2025-06-26 23:40:09,018 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2018.079.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 23:40:09,025 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 3.97 INFO 2025-06-26 23:40:09,123 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2018.079.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 23:40:09,129 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 3.97 INFO 2025-06-26 23:40:09,225 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2018.079.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 23:40:09,231 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 3.97 INFO 2025-06-26 23:40:09,328 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2018.079.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 23:40:09,334 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 3.97 INFO 2025-06-26 23:40:09,431 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2018.079.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 23:40:09,437 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 3.97 INFO 2025-06-26 23:40:09,534 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2018.079.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 23:40:09,541 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 3.97 INFO 2025-06-26 23:40:09,636 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2018.079.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 23:40:09,643 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 3.97 INFO 2025-06-26 23:40:09,739 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2018.079.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 23:40:09,746 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 3.97 INFO 2025-06-26 23:40:09,842 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2018.079.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 23:40:09,849 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 3.97 INFO 2025-06-26 23:40:09,946 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2018.079.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 23:40:09,952 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 3.97 INFO 2025-06-26 23:40:10,050 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2018.079.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 23:40:10,057 align.py process_cal():249 [1] ctd2_salinity_onboard: instrument_sample_rate_hz = 3.97 INFO 2025-06-26 23:40:10,154 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2018.079.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 23:40:10,160 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 3.97 INFO 2025-06-26 23:40:10,256 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2018.079.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 23:40:10,262 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 3.97 INFO 2025-06-26 23:40:10,380 align.py process_cal():249 [1] isus_nitrate: instrument_sample_rate_hz = 0.78 INFO 2025-06-26 23:40:10,461 align.py process_cal():249 [1] isus_temp: instrument_sample_rate_hz = 0.78 INFO 2025-06-26 23:40:10,542 align.py process_cal():249 [1] isus_quality: instrument_sample_rate_hz = 0.78 INFO 2025-06-26 23:40:10,627 align.py process_cal():249 [1] biolume_flow: instrument_sample_rate_hz = 0.98 INFO 2025-06-26 23:40:10,714 align.py process_cal():249 [1] biolume_avg_biolume: instrument_sample_rate_hz = 0.98 INFO 2025-06-26 23:40:10,856 align.py process_cal():249 [1] biolume_raw: instrument_sample_rate_hz = 58.34 INFO 2025-06-26 23:40:11,723 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 23:40:11,801 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2018.079.00/dorado_2018.079.00_align.nc INFO 2025-06-26 23:40:12,013 align.py write_netcdf():342 [1] Data variables written: biolume_avg_biolume, biolume_depth, biolume_flow, biolume_latitude, biolume_longitude, biolume_raw, biolume_time, biolume_time60hz, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_salinity_onboard, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_salinity_onboard, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, hs2_bbp420, hs2_bbp700, hs2_depth, hs2_fl700, hs2_latitude, hs2_longitude, hs2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-06-26 23:40:12,016 process.py resample():273 [1] Resampling steps for 2018.079.00 INFO 2025-06-26 23:40:12,017 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-06-26 23:40:12,063 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2018.079.00/dorado_2018.079.00_align.nc mission netCDF file INFO 2025-06-26 23:40:12,071 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2018.079.00/dorado_2018.079.00_align.nc mission netCDF file INFO 2025-06-26 23:40:12,072 resample.py get_mission_start_end():1145 [1] navigation: 2018-03-20T18:22:10.928085248 to 2018-03-21T04:08:43.727213568 (0 days 00:00:00.109992448 before mission_end) INFO 2025-06-26 23:40:12,074 resample.py get_mission_start_end():1145 [1] hs2 : 2018-03-20T18:21:37.160398848 to 2018-03-21T04:08:43.747212288 (0 days 00:00:00.089993728 before mission_end) INFO 2025-06-26 23:40:12,076 resample.py get_mission_start_end():1145 [1] ctd1 : 2018-03-20T18:22:14.967808768 to 2018-03-21T04:08:43.717214464 (0 days 00:00:00.119991552 before mission_end) INFO 2025-06-26 23:40:12,078 resample.py get_mission_start_end():1145 [1] ctd2 : 2018-03-20T18:21:58.288951040 to 2018-03-21T04:08:43.757211392 (0 days 00:00:00.079994624 before mission_end) INFO 2025-06-26 23:40:12,080 resample.py get_mission_start_end():1145 [1] isus : 2018-03-20T18:22:49.135468032 to 2018-03-21T04:08:43.837206016 (0 days 00:00:00 before mission_end) INFO 2025-06-26 23:40:12,081 resample.py get_mission_start_end():1145 [1] biolume : 2018-03-20T18:21:31.240769792 to 2018-03-21T04:08:42.467265536 (0 days 00:00:01.369940480 before mission_end) INFO 2025-06-26 23:40:12,083 resample.py get_mission_start_end():1145 [1] tailcone : 2018-03-20T18:21:39.560234240 to 2018-03-21T04:08:43.767210752 (0 days 00:00:00.069995264 before mission_end) INFO 2025-06-26 23:40:12,084 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2018.079.00/dorado_2018.079.00_align.nc mission netCDF file INFO 2025-06-26 23:40:12,084 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-06-26 23:40:12,450 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-06-26 23:40:12,511 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-06-26 23:40:12,570 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-06-26 23:40:12,630 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 23:40:12,681 resample.py resample_variable():1031 [1] Resampling hs2_bbp420 with frequency 1S following 3 point median filter INFO 2025-06-26 23:40:12,732 resample.py resample_variable():1031 [1] Resampling hs2_bbp700 with frequency 1S following 3 point median filter INFO 2025-06-26 23:40:12,783 resample.py resample_variable():1031 [1] Resampling hs2_fl700 with frequency 1S following 3 point median filter INFO 2025-06-26 23:40:12,833 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 23:40:12,881 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 23:40:12,928 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 23:40:12,974 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 23:40:13,021 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 23:40:13,068 resample.py resample_variable():1031 [1] Resampling ctd1_salinity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 23:40:13,115 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-06-26 23:40:13,161 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-06-26 23:40:13,207 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-06-26 23:40:13,254 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-06-26 23:40:13,302 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 23:40:13,353 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 23:40:13,406 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 23:40:13,455 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 23:40:13,505 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 23:40:13,555 resample.py resample_variable():1031 [1] Resampling ctd2_salinity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 23:40:13,607 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-06-26 23:40:13,630 resample.py resample_variable():1031 [1] Resampling isus_nitrate with frequency 1S following 3 point median filter INFO 2025-06-26 23:40:13,650 resample.py resample_variable():1031 [1] Resampling isus_temp with frequency 1S following 3 point median filter INFO 2025-06-26 23:40:13,670 resample.py resample_variable():1031 [1] Resampling isus_quality with frequency 1S following 3 point median filter INFO 2025-06-26 23:40:13,689 resample.py resample_variable():1031 [1] Resampling biolume_flow with frequency 1S following 3 point median filter INFO 2025-06-26 23:40:13,708 resample.py resample_variable():1031 [1] Resampling biolume_avg_biolume with frequency 1S following 3 point median filter INFO 2025-06-26 23:40:13,715 resample.py set_proxy_parameters():520 [1] Setting biolume proxy parameters for period4 INFO 2025-06-26 23:40:13,715 resample.py add_biolume_proxies():549 [1] Adding biolume proxy variables computed from biolume_raw INFO 2025-06-26 23:40:14,896 resample.py add_biolume_proxies():595 [1] Using flash_threshold = 1.0000e+11 INFO 2025-06-26 23:40:15,221 resample.py add_biolume_proxies():638 [1] Computing flashes per liter: nbflash_high, nbflash_low INFO 2025-06-26 23:40:15,359 resample.py add_biolume_proxies():666 [1] Saving flash intensity: biolume_intflash - the upper bound of the background envelope INFO 2025-06-26 23:40:15,415 resample.py add_biolume_proxies():683 [1] Saving Background bioluminescence (dinoflagellates proxy) INFO 2025-06-26 23:40:15,459 resample.py select_nighttime_bl_raw():432 [1] No sunset or sunrise found during this mission. INFO 2025-06-26 23:40:15,459 resample.py add_biolume_proxies():694 [1] No nighttime_bl_raw data to compute adinos, diatoms, hdinos proxies INFO 2025-06-26 23:40:15,524 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-06-26 23:40:15,837 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2018.079.00/dorado_2018.079.00_1S.nc INFO 2025-06-26 23:40:19,896 create_products.py _get_best_ctd():375 [1] Best CTD is ctd2 INFO 2025-06-26 23:40:37,402 create_products.py gulper_odv():522 [1] Wrote 16 Gulper data lines to /data/auv_data/dorado/missionodvs/2018.079.00/dorado_2018.079.00_1S_Gulper.txt INFO 2025-06-26 23:40:37,402 process.py archive():337 [1] Archiving steps for 2018.079.00 INFO 2025-06-26 23:40:37,403 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2018.079.00/dorado_2018.079.00, BASE_PATH = /data/auv_data INFO 2025-06-26 23:40:37,404 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2018.079.00/dorado_2018.079.00 files to /Volumes/AUVCTD/surveys/2018/netcdf INFO 2025-06-26 23:40:37,405 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2018/netcdf/dorado_2018.079.00_1S.nc INFO 2025-06-26 23:40:37,435 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2018.079.00/dorado_2018.079.00_1S.nc /Volumes/AUVCTD/surveys/2018/netcdf done. INFO 2025-06-26 23:40:37,436 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2018/netcdf/dorado_2018.079.00_cal.nc INFO 2025-06-26 23:40:37,626 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2018.079.00/dorado_2018.079.00_cal.nc /Volumes/AUVCTD/surveys/2018/netcdf done. INFO 2025-06-26 23:40:37,628 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2018/netcdf/dorado_2018.079.00_align.nc INFO 2025-06-26 23:40:37,931 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2018.079.00/dorado_2018.079.00_align.nc /Volumes/AUVCTD/surveys/2018/netcdf done. INFO 2025-06-26 23:40:37,971 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2018.079.00/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2018/2018079/2018.079.00 done. INFO 2025-06-26 23:40:38,008 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2018.079.00/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2018/2018079/2018.079.00 done. INFO 2025-06-26 23:40:38,014 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2018.079.00/gps.nc /Volumes/AUVCTD/missionnetcdfs/2018/2018079/2018.079.00 done. INFO 2025-06-26 23:40:38,046 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2018.079.00/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2018/2018079/2018.079.00 done. INFO 2025-06-26 23:40:38,178 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2018.079.00/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2018/2018079/2018.079.00 done. INFO 2025-06-26 23:40:38,186 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2018.079.00/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2018/2018079/2018.079.00 done. INFO 2025-06-26 23:40:38,228 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2018.079.00/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2018/2018079/2018.079.00 done. INFO 2025-06-26 23:40:38,259 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2018.079.00/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2018/2018079/2018.079.00 done. INFO 2025-06-26 23:40:38,358 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2018.079.00/biolume.nc /Volumes/AUVCTD/missionnetcdfs/2018/2018079/2018.079.00 done. INFO 2025-06-26 23:40:38,402 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2018.079.00/lopc.nc /Volumes/AUVCTD/missionnetcdfs/2018/2018079/2018.079.00 done. INFO 2025-06-26 23:40:38,402 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-06-26 23:40:38,403 archive.py copy_to_AUVTCD():133 [1] Removing /Volumes/AUVCTD/surveys/2018/odv/dorado_2018.079.00_1S_Gulper.txt INFO 2025-06-26 23:40:38,408 archive.py copy_to_AUVTCD():136 [1] copyfile /data/auv_data/dorado/missionodvs/2018.079.00/dorado_2018.079.00_1S_Gulper.txt /Volumes/AUVCTD/surveys/2018/odv done. INFO 2025-06-26 23:40:38,408 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2018.079.00/dorado_2018.079.00_processing.log /Volumes/AUVCTD/surveys/2018/netcdf