INFO 2025-06-26 21:36:06,785 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2015 --end_year 2025 --num_cores 1 -v --noinput --clobber INFO 2025-06-26 21:36:06,785 process.py process_mission():434 [1] dorado_info[mission]["comment"] = CANON September 2015 - ctdToUse = ctd1 INFO 2025-06-26 21:36:06,786 process.py process_mission():449 [1] Processing CANON September 2015 mission 2015.265.03 by user docker_user on host 355841a7028c INFO 2025-06-26 21:36:06,786 process.py download_process():165 [1] Download and processing steps for 2015.265.03 INFO 2025-06-26 21:36:06,786 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2015/2015265/2015.265.03 INFO 2025-06-26 21:36:06,786 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2015/2015265/2015.265.03 to /data/auv_data/dorado/missionlogs/2015.265.03 INFO 2025-06-26 21:36:15,078 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2015.265.03 INFO 2025-06-26 21:36:15,078 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2015.265.03/ctdDriver.log (34313286 bytes) INFO 2025-06-26 21:36:18,264 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2015.265.03/ctdDriver2.log (34313087 bytes) INFO 2025-06-26 21:36:21,230 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2015.265.03/gps.log (566348 bytes) INFO 2025-06-26 21:36:21,296 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2015.265.03/hydroscatlog.log (30017422 bytes) INFO 2025-06-26 21:36:25,080 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2015.265.03/navigation.log (128652930 bytes) INFO 2025-06-26 21:36:34,576 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2015.265.03/isuslog.log (2222037 bytes) INFO 2025-06-26 21:36:34,799 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2015.265.03/parosci.log (42085718 bytes) INFO 2025-06-26 21:36:38,298 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/dorado/missionlogs/2015.265.03/parosci.log: [ 1 470235 470236 470237 470238 470239 470240] INFO 2025-06-26 21:36:38,409 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2015.265.03/tailCone.log (21452155 bytes) INFO 2025-06-26 21:36:41,345 logs2netcdfs.py download_process_logs():807 [1] Time to process: 26.27 seconds INFO 2025-06-26 21:36:41,345 process.py download_process():198 [1] Processing file /data/auv_data/dorado/missionlogs/2015.265.03/lopc.bin (118312054 bytes) INFO 2025-06-26 21:36:41,345 lopcToNetCDF.py main():2297 [1] Processing begun: Thu Jun 26 21:36:41 2025 INFO 2025-06-26 21:36:41,345 lopcToNetCDF.py constructTimestampList():1296 [1] parosci_nc = /data/auv_data/dorado/missionnetcdfs/2015.265.03/parosci.nc INFO 2025-06-26 21:36:41,345 lopcToNetCDF.py constructTimestampList():1297 [1] Using NetCDF4 to get start and end epoch seconds for this mission from this URL: INFO 2025-06-26 21:36:41,345 lopcToNetCDF.py constructTimestampList():1300 [1] /data/auv_data/dorado/missionnetcdfs/2015.265.03/parosci.nc INFO 2025-06-26 21:36:41,349 lopcToNetCDF.py constructTimestampList():1317 [1] From associated parosci.nc file: sensor_on_time = 1442940111.6, sensor_off_time = 1443029493.9 INFO 2025-06-26 21:36:41,349 lopcToNetCDF.py constructTimestampList():1322 [1] Duration is 89382 seconds. Expecting to read 178764 L frames from the lopc.bin file. INFO 2025-06-26 21:36:41,349 lopcToNetCDF.py constructTimestampList():1330 [1] recCount not passed in, assuming we'll have 178764 records from the lopc.bin file. INFO 2025-06-26 21:36:42,399 lopcToNetCDF.py main():2321 [1] Examined sibling parosci.nc file to find startTime = 2015-09-22 16:41:51 Z and endTime = 2015-09-23 17:31:33 Z with 178764 records expected to be read from lopc.bin INFO 2025-06-26 21:36:42,399 lopcToNetCDF.py unpackLOPCbin():723 [1] >>> Unpacking LOPC data from /data/auv_data/dorado/missionlogs/2015.265.03/lopc.bin INFO 2025-06-26 21:36:42,399 lopcToNetCDF.py unpackLOPCbin():724 [1] >>> Will write to NetCDF file /data/auv_data/dorado/missionnetcdfs/2015.265.03/lopc.nc INFO 2025-06-26 21:36:42,400 lopcToNetCDF.py openNetCDFFile():1861 [1] Will output NetCDF file to /data/auv_data/dorado/missionnetcdfs/2015.265.03/lopc.nc INFO 2025-06-26 21:36:42,400 lopcToNetCDF.py openNetCDFFile():1887 [1] missionName = 2015.265.03 INFO 2025-06-26 21:36:42,400 lopcToNetCDF.py openNetCDFFile():1910 [1] Writing bin axis for len(self.dataStructure['binSizeList']) = 994 WARNING 2025-06-26 21:36:42,404 lopcToNetCDF.py readCframeData():665 [1] Unable to parse a float from the string cstr[:70] = INFO 2025-06-26 21:36:42,469 lopcToNetCDF.py unpackLOPCbin():951 [1] L Frames sample M Frames ShortLFrame LBeforeMEnd MBeforeLEnd UnknownFrame Garbled L INFO 2025-06-26 21:36:42,469 lopcToNetCDF.py unpackLOPCbin():969 [1] Count Count Count Error Error Error Error Error INFO 2025-06-26 21:36:42,469 lopcToNetCDF.py unpackLOPCbin():987 [1] -------- -------- -------- ----------- ----------- ----------- ----------- ------------ INFO 2025-06-26 21:36:49,867 lopcToNetCDF.py unpackLOPCbin():1013 [1] 10000 15485 17861 1 0 0 0 0 7.5 seconds, last L Frame: 178764 INFO 2025-06-26 21:37:00,533 lopcToNetCDF.py unpackLOPCbin():1013 [1] 20000 25485 45632 1 0 0 0 0 10.7 seconds, last L Frame: 178764 INFO 2025-06-26 21:37:09,176 lopcToNetCDF.py unpackLOPCbin():1013 [1] 30000 35486 67878 2 0 0 0 0 8.6 seconds, last L Frame: 178764 ERROR 2025-06-26 21:37:18,719 process.py download_process():223 [1] UnexpectedAreaOfCode: Encountered unexpected area of code - lopc.nc file is probably corrupt INFO 2025-06-26 21:37:18,722 process.py calibrate():227 [1] Calibration steps for 2015.265.03 INFO 2025-06-26 21:37:19,372 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-06-26 21:37:19,374 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-06-26 21:37:20,450 calibrate.py _nudge_pos():1806 [1] 139: 0.070 -0.0008677 -0.0001202 2425 8.08 -15.924 -2.758 2015-09-22T16:52:08.982535936 INFO 2025-06-26 21:37:21,348 calibrate.py _nudge_pos():1806 [1] 227: 0.050 0.0012471 -0.0014908 3255 10.85 17.048 -25.468 2015-09-22T17:04:26.991978752 INFO 2025-06-26 21:37:22,051 calibrate.py _nudge_pos():1806 [1] 295: 0.070 0.0055516 -0.0082795 15715 52.38 15.713 -29.290 2015-09-22T17:57:56.982079232 INFO 2025-06-26 21:37:22,794 calibrate.py _nudge_pos():1806 [1] 366: 0.070 0.0044050 -0.0138258 18619 62.06 10.521 -41.279 2015-09-22T19:01:10.982172416 INFO 2025-06-26 21:37:23,655 calibrate.py _nudge_pos():1806 [1] 449: 0.070 0.0019191 -0.0114104 15475 51.58 5.514 -40.992 2015-09-22T19:54:08.984464384 INFO 2025-06-26 21:37:24,578 calibrate.py _nudge_pos():1806 [1] 535: 0.080 0.0038009 -0.0132639 18495 61.65 9.137 -39.869 2015-09-22T20:57:14.985105664 INFO 2025-06-26 21:37:24,980 calibrate.py _nudge_pos():1806 [1] 574: 0.080 -0.0000234 0.0000028 20 0.06 -54.866 8.327 2015-09-22T20:57:57.982160128 INFO 2025-06-26 21:37:25,159 calibrate.py _nudge_pos():1806 [1] 591: 0.080 0.0000429 0.0000296 20 0.06 100.282 86.515 2015-09-22T20:58:17.990789376 INFO 2025-06-26 21:37:25,366 calibrate.py _nudge_pos():1806 [1] 611: 0.080 0.0037284 -0.0132467 18640 62.13 8.891 -39.508 2015-09-22T22:00:44.984102656 INFO 2025-06-26 21:37:25,548 calibrate.py _nudge_pos():1806 [1] 628: 0.080 0.0038020 -0.0132227 225 0.75 754.287 -3280.969 2015-09-22T22:01:45.989923840 INFO 2025-06-26 21:37:25,559 calibrate.py _nudge_pos():1806 [1] 629: 0.080 0.0038137 -0.0131945 230 0.76 740.259 -3203.187 2015-09-22T22:02:31.986772480 INFO 2025-06-26 21:37:25,718 calibrate.py _nudge_pos():1806 [1] 644: 0.080 -0.0000120 -0.0000349 25 0.08 -22.307 -80.950 2015-09-22T22:02:50.985471232 INFO 2025-06-26 21:37:26,107 calibrate.py _nudge_pos():1806 [1] 681: 0.080 0.0000145 -0.0000152 35 0.11 18.955 -24.840 2015-09-22T22:03:33.982525696 INFO 2025-06-26 21:37:26,340 calibrate.py _nudge_pos():1806 [1] 703: 0.080 -0.0000072 0.0000105 20 0.06 -16.774 30.581 2015-09-22T22:03:59.990743808 INFO 2025-06-26 21:37:26,396 calibrate.py _nudge_pos():1806 [1] 708: 0.080 0.0025480 -0.0098685 15598 52.00 7.259 -35.168 2015-09-22T22:56:03.986735616 INFO 2025-06-26 21:37:26,514 calibrate.py _nudge_pos():1806 [1] 719: 0.080 -0.0000001 -0.0000272 65 0.21 -0.096 -23.612 2015-09-22T22:56:26.985160192 INFO 2025-06-26 21:37:26,525 calibrate.py _nudge_pos():1806 [1] 720: 0.080 0.0000858 -0.0000198 20 0.06 200.792 -57.998 2015-09-22T22:56:30.984886272 INFO 2025-06-26 21:37:26,557 calibrate.py _nudge_pos():1806 [1] 723: 0.090 -0.0000272 -0.0000491 55 0.18 -22.362 -50.563 2015-09-22T22:56:44.983927040 INFO 2025-06-26 21:37:26,589 calibrate.py _nudge_pos():1806 [1] 726: 0.080 -0.0000053 -0.0000169 15 0.05 -16.960 -67.255 2015-09-22T22:56:49.983584768 INFO 2025-06-26 21:37:26,610 calibrate.py _nudge_pos():1806 [1] 728: 0.090 0.0000897 0.0000216 50 0.16 81.381 24.479 2015-09-22T22:57:00.982831104 INFO 2025-06-26 21:37:26,799 calibrate.py _nudge_pos():1806 [1] 746: 0.080 0.0000113 -0.0000191 20 0.06 26.358 -55.909 2015-09-22T22:57:21.991392000 INFO 2025-06-26 21:37:26,820 calibrate.py _nudge_pos():1806 [1] 748: 0.070 -0.0000049 0.0000400 15 0.05 -15.570 158.850 2015-09-22T22:57:25.991118080 INFO 2025-06-26 21:37:27,092 calibrate.py _nudge_pos():1806 [1] 774: 0.090 0.0047671 -0.0121414 19100 63.66 11.090 -35.339 2015-09-23T00:01:31.987649280 INFO 2025-06-26 21:37:27,693 calibrate.py _nudge_pos():1806 [1] 831: 0.090 0.0000042 -0.0000182 15 0.05 13.444 -72.294 2015-09-23T00:02:30.983607552 INFO 2025-06-26 21:37:27,843 calibrate.py _nudge_pos():1806 [1] 845: 0.090 0.0039928 -0.0128415 18575 61.91 9.549 -38.433 2015-09-23T01:04:38.988221952 INFO 2025-06-26 21:37:27,908 calibrate.py _nudge_pos():1806 [1] 851: 0.090 -0.0000124 0.0000170 25 0.08 -22.899 39.326 2015-09-23T01:04:48.987536640 INFO 2025-06-26 21:37:28,289 calibrate.py _nudge_pos():1806 [1] 887: 0.090 0.0000767 -0.0000358 30 0.10 117.544 -68.678 2015-09-23T01:05:31.984591360 INFO 2025-06-26 21:37:28,342 calibrate.py _nudge_pos():1806 [1] 892: 0.090 -0.0000320 -0.0000686 20 0.06 -74.934 -200.829 2015-09-23T01:05:39.984043264 INFO 2025-06-26 21:37:28,396 calibrate.py _nudge_pos():1806 [1] 897: 0.090 0.0014520 -0.0081141 12575 41.91 5.129 -35.873 2015-09-23T01:47:38.991479296 INFO 2025-06-26 21:37:28,439 calibrate.py _nudge_pos():1806 [1] 901: 0.090 0.0000109 -0.0000352 60 0.20 8.178 -33.141 2015-09-23T01:47:53.990451968 INFO 2025-06-26 21:37:28,578 calibrate.py _nudge_pos():1806 [1] 914: 0.090 -0.0000366 -0.0000012 75 0.25 -21.943 -0.895 2015-09-23T01:48:20.988602368 INFO 2025-06-26 21:37:29,269 calibrate.py _nudge_pos():1806 [1] 978: 0.090 0.0112457 -0.0080813 18450 61.50 27.077 -24.350 2015-09-23T02:50:55.991367168 INFO 2025-06-26 21:37:29,674 calibrate.py _nudge_pos():1806 [1] 1016: 0.100 0.0000210 -0.0000324 15 0.05 66.586 -128.465 2015-09-23T02:51:35.988627200 INFO 2025-06-26 21:37:29,931 calibrate.py _nudge_pos():1806 [1] 1040: 0.090 -0.0000426 0.0000248 30 0.10 -65.267 47.467 2015-09-23T02:52:04.986640640 INFO 2025-06-26 21:37:29,985 calibrate.py _nudge_pos():1806 [1] 1045: 0.100 0.0000054 0.0000624 15 0.05 17.099 247.788 2015-09-23T02:52:11.986161152 INFO 2025-06-26 21:37:30,009 calibrate.py _nudge_pos():1806 [1] 1047: 0.090 0.0094463 -0.0019945 18550 61.83 22.626 -5.977 2015-09-23T03:54:02.991939840 INFO 2025-06-26 21:37:30,995 calibrate.py _nudge_pos():1806 [1] 1139: 0.110 0.0031682 -0.0009116 13340 44.46 10.555 -3.799 2015-09-23T04:40:02.982867456 INFO 2025-06-26 21:37:31,771 calibrate.py _nudge_pos():1806 [1] 1211: 0.110 0.0030208 0.0044589 17690 58.96 7.591 14.013 2015-09-23T05:40:11.985633792 INFO 2025-06-26 21:37:32,603 calibrate.py _nudge_pos():1806 [1] 1289: 0.110 0.0023591 0.0083521 15890 52.96 6.602 29.221 2015-09-23T06:34:26.982651136 INFO 2025-06-26 21:37:33,437 calibrate.py _nudge_pos():1806 [1] 1366: 0.100 0.0036753 0.0119778 17945 59.81 9.111 37.107 2015-09-23T07:35:32.991512576 INFO 2025-06-26 21:37:33,450 calibrate.py _nudge_pos():1806 [1] 1367: 0.100 0.0037178 0.0120178 15 0.05 11813.233 47722.399 2015-09-23T07:35:35.991307008 INFO 2025-06-26 21:37:34,632 calibrate.py _nudge_pos():1806 [1] 1475: 0.110 -0.0001311 0.0000331 240 0.80 -24.395 7.687 2015-09-23T07:38:11.990620416 INFO 2025-06-26 21:37:34,764 calibrate.py _nudge_pos():1806 [1] 1487: 0.110 -0.0001899 0.0001967 290 0.96 -29.223 37.829 2015-09-23T07:39:20.985893632 INFO 2025-06-26 21:37:35,415 calibrate.py _nudge_pos():1806 [1] 1547: 0.100 0.0000304 0.0000589 30 0.10 46.691 112.843 2015-09-23T07:40:25.991440640 INFO 2025-06-26 21:37:35,567 calibrate.py _nudge_pos():1806 [1] 1561: 0.110 0.0052442 0.0137315 18720 62.40 12.466 40.779 2015-09-23T08:43:02.984069120 INFO 2025-06-26 21:37:36,127 calibrate.py _nudge_pos():1806 [1] 1612: 0.110 -0.0000178 0.0000110 15 0.05 -56.628 43.624 2015-09-23T08:43:55.990437632 INFO 2025-06-26 21:37:36,304 calibrate.py _nudge_pos():1806 [1] 1628: 0.110 -0.0000004 -0.0000136 15 0.05 -1.385 -54.120 2015-09-23T08:44:13.989204992 INFO 2025-06-26 21:37:36,337 calibrate.py _nudge_pos():1806 [1] 1631: 0.120 0.0044262 0.0150673 19015 63.38 10.362 44.051 2015-09-23T09:47:38.988544512 INFO 2025-06-26 21:37:36,395 calibrate.py _nudge_pos():1806 [1] 1636: 0.120 0.0000244 -0.0000195 20 0.06 57.093 -57.050 2015-09-23T09:47:46.987996672 INFO 2025-06-26 21:37:36,915 calibrate.py _nudge_pos():1806 [1] 1683: 0.120 0.0022049 0.0097196 19260 64.20 5.098 28.055 2015-09-23T10:52:44.990964992 INFO 2025-06-26 21:37:37,181 calibrate.py _nudge_pos():1806 [1] 1707: 0.120 0.0000169 -0.0000359 20 0.06 39.678 -104.949 2015-09-23T10:53:12.989047040 INFO 2025-06-26 21:37:37,827 calibrate.py _nudge_pos():1806 [1] 1765: 0.120 -0.0000319 0.0002041 300 1.00 -4.758 37.944 2015-09-23T10:55:09.991031808 INFO 2025-06-26 21:37:37,860 calibrate.py _nudge_pos():1806 [1] 1768: 0.120 0.0000010 -0.0000091 25 0.08 1.806 -20.973 2015-09-23T10:55:16.990552320 INFO 2025-06-26 21:37:37,937 calibrate.py _nudge_pos():1806 [1] 1775: 0.120 -0.0000366 0.0000688 300 1.00 -5.455 12.794 2015-09-23T10:56:22.986031360 INFO 2025-06-26 21:37:38,789 calibrate.py _nudge_pos():1806 [1] 1852: 0.120 -0.0117533 0.0028432 13290 44.30 -39.381 11.894 2015-09-23T11:41:56.988739328 INFO 2025-06-26 21:37:39,579 calibrate.py _nudge_pos():1806 [1] 1923: 0.130 -0.0132227 0.0033339 18850 62.83 -31.230 9.833 2015-09-23T12:45:56.985681408 INFO 2025-06-26 21:37:39,937 calibrate.py _nudge_pos():1806 [1] 1955: 0.130 -0.0000451 0.0000430 25 0.08 -83.731 99.713 2015-09-23T12:46:33.983147008 INFO 2025-06-26 21:37:40,531 calibrate.py _nudge_pos():1806 [1] 2007: 0.130 -0.0149238 0.0055660 18940 63.13 -35.073 16.337 2015-09-23T13:50:32.990156800 INFO 2025-06-26 21:37:41,331 calibrate.py _nudge_pos():1806 [1] 2077: 0.130 -0.0115859 0.0033675 19215 64.05 -26.835 9.743 2015-09-23T14:55:44.982167296 INFO 2025-06-26 21:37:41,469 calibrate.py _nudge_pos():1806 [1] 2089: 0.130 -0.0116109 0.0034237 115 0.38 -4532.997 1669.626 2015-09-23T14:56:19.989768960 INFO 2025-06-26 21:37:41,527 calibrate.py _nudge_pos():1806 [1] 2094: 0.130 -0.0116884 0.0035216 120 0.40 -4371.544 1645.214 2015-09-23T14:56:48.987782400 INFO 2025-06-26 21:37:41,914 calibrate.py _nudge_pos():1806 [1] 2128: 0.140 -0.0117243 0.0036447 95 0.31 -5551.141 2155.554 2015-09-23T14:57:42.984083456 INFO 2025-06-26 21:37:41,995 calibrate.py _nudge_pos():1806 [1] 2135: 0.130 -0.0000368 0.0000529 20 0.06 -86.220 154.784 2015-09-23T14:57:52.983398400 INFO 2025-06-26 21:37:42,030 calibrate.py _nudge_pos():1806 [1] 2138: 0.140 -0.0000476 0.0000847 75 0.25 -28.610 63.610 2015-09-23T14:58:09.982234112 INFO 2025-06-26 21:37:42,135 calibrate.py _nudge_pos():1806 [1] 2147: 0.130 -0.0000176 0.0000626 40 0.13 -20.041 89.170 2015-09-23T14:58:25.991137280 INFO 2025-06-26 21:37:42,785 calibrate.py _nudge_pos():1806 [1] 2204: 0.130 -0.0062261 0.0015224 16545 55.15 -16.747 5.116 2015-09-23T15:54:31.990550528 INFO 2025-06-26 21:37:44,268 calibrate.py _nudge_pos():1806 [1] 2330: 0.130 -0.0000079 0.0000167 25 0.08 -14.685 38.767 2015-09-23T15:56:41.991644928 INFO 2025-06-26 21:37:45,867 calibrate.py _nudge_pos():1806 [1] 2467: 0.130 0.0000441 0.0000381 35 0.11 57.590 62.216 2015-09-23T15:59:05.991780352 INFO 2025-06-26 21:37:48,031 calibrate.py _nudge_pos():1806 [1] 2656: 0.130 -0.0000096 0.0000103 60 0.20 -7.205 9.689 2015-09-23T16:02:25.988079616 INFO 2025-06-26 21:37:48,613 calibrate.py _nudge_pos():1806 [1] 2707: 0.140 -0.0000043 0.0000058 25 0.08 -8.043 13.448 2015-09-23T16:03:20.984312064 INFO 2025-06-26 21:37:50,937 calibrate.py _nudge_pos():1806 [1] 2910: 0.130 -0.0000470 0.0000122 30 0.10 -72.115 23.471 2015-09-23T16:06:48.990062592 INFO 2025-06-26 21:37:52,187 calibrate.py _nudge_pos():1806 [1] 3020: 0.140 -0.0000225 0.0000476 35 0.11 -29.485 77.881 2015-09-23T16:08:44.982116608 INFO 2025-06-26 21:37:53,285 calibrate.py _nudge_pos():1806 [1] 3117: 0.140 -0.0000144 -0.0000226 55 0.18 -11.837 -23.288 2015-09-23T16:10:31.984786432 INFO 2025-06-26 21:37:53,740 calibrate.py _nudge_pos():1806 [1] 3157: 0.130 -0.0000683 -0.0000051 30 0.10 -104.595 -9.786 2015-09-23T16:11:16.991703296 INFO 2025-06-26 21:37:59,534 calibrate.py _nudge_pos():1806 [1] 3664: 0.140 0.0000061 0.0000124 15 0.05 19.495 49.349 2015-09-23T16:19:45.986834688 INFO 2025-06-26 21:38:02,360 calibrate.py _nudge_pos():1806 [1] 3909: 0.130 0.0000047 0.0000059 15 0.05 14.862 23.487 2015-09-23T16:23:52.989913856 INFO 2025-06-26 21:38:02,465 calibrate.py _nudge_pos():1806 [1] 3918: 0.130 -0.0000402 0.0000272 25 0.08 -74.560 63.049 2015-09-23T16:24:05.989023488 INFO 2025-06-26 21:38:03,110 calibrate.py _nudge_pos():1806 [1] 3974: 0.140 0.0000057 0.0000044 25 0.08 10.542 10.156 2015-09-23T16:25:05.984913408 INFO 2025-06-26 21:38:04,715 calibrate.py _nudge_pos():1806 [1] 4115: 0.140 0.0000269 0.0000157 15 0.05 85.572 62.170 2015-09-23T16:27:30.984980224 INFO 2025-06-26 21:38:04,784 calibrate.py _nudge_pos():1806 [1] 4121: 0.140 0.0000915 -0.0000280 45 0.15 92.514 -35.348 2015-09-23T16:27:44.984021248 INFO 2025-06-26 21:38:04,797 calibrate.py _nudge_pos():1806 [1] 4122: 0.140 -0.0000760 0.0000286 15 0.05 -241.502 113.628 2015-09-23T16:27:47.983815680 INFO 2025-06-26 21:38:06,029 calibrate.py _nudge_pos():1806 [1] 4230: 0.140 0.0000044 0.0000345 15 0.05 14.109 137.158 2015-09-23T16:29:37.986279936 INFO 2025-06-26 21:38:07,986 calibrate.py _nudge_pos():1806 [1] 4397: 0.140 0.0000074 -0.0000301 25 0.08 13.706 -69.740 2015-09-23T16:32:29.984497408 INFO 2025-06-26 21:38:12,602 calibrate.py _nudge_pos():1806 [1] 4798: 0.140 -0.0000283 -0.0000956 25 0.08 -52.451 -221.469 2015-09-23T16:39:16.986615552 INFO 2025-06-26 21:38:14,038 calibrate.py _nudge_pos():1806 [1] 4921: 0.140 0.0000210 0.0000048 55 0.18 17.308 4.913 2015-09-23T16:41:29.987504384 INFO 2025-06-26 21:38:15,025 calibrate.py _nudge_pos():1806 [1] 5002: 0.130 -0.0000391 0.0000631 35 0.11 -51.234 103.205 2015-09-23T16:42:56.991544320 INFO 2025-06-26 21:38:15,828 calibrate.py _nudge_pos():1806 [1] 5072: 0.140 -0.0000450 0.0000405 15 0.05 -143.103 161.017 2015-09-23T16:44:08.986612224 INFO 2025-06-26 21:38:17,738 calibrate.py _nudge_pos():1806 [1] 5238: 0.140 -0.0000591 -0.0000127 25 0.08 -109.582 -29.476 2015-09-23T16:46:59.984898048 INFO 2025-06-26 21:38:23,605 calibrate.py _nudge_pos():1806 [1] 5737: 0.130 -0.0000092 -0.0000323 25 0.08 -17.113 -74.879 2015-09-23T16:55:24.990302976 INFO 2025-06-26 21:38:24,494 calibrate.py _nudge_pos():1806 [1] 5815: 0.140 0.0000371 0.0000719 55 0.18 30.576 74.041 2015-09-23T16:56:52.984274944 INFO 2025-06-26 21:38:25,436 calibrate.py _nudge_pos():1806 [1] 5897: 0.130 0.0000188 -0.0000156 15 0.05 59.692 -61.842 2015-09-23T16:58:16.988520192 INFO 2025-06-26 21:38:26,258 calibrate.py _nudge_pos():1806 [1] 5969: 0.140 0.0000177 0.0000162 20 0.06 41.497 47.465 2015-09-23T16:59:31.983382784 INFO 2025-06-26 21:38:26,547 calibrate.py _nudge_pos():1806 [1] 5994: 0.130 0.0000703 0.0000645 25 0.08 130.325 149.364 2015-09-23T17:00:00.991395584 INFO 2025-06-26 21:38:28,204 calibrate.py _nudge_pos():1806 [1] 6139: 0.140 -0.0000203 0.0000105 20 0.06 -47.547 30.738 2015-09-23T17:02:28.991256832 INFO 2025-06-26 21:38:30,199 calibrate.py _nudge_pos():1806 [1] 6313: 0.140 -0.0000094 -0.0000003 15 0.05 -29.887 -1.025 2015-09-23T17:05:25.989131776 INFO 2025-06-26 21:38:33,636 calibrate.py _nudge_pos():1806 [1] 6605: 0.140 -0.0000360 -0.0000697 25 0.08 -66.721 -161.362 2015-09-23T17:10:21.988854528 INFO 2025-06-26 21:38:38,675 calibrate.py _nudge_pos():1806 [1] 7043: 0.140 0.0000641 -0.0000476 25 0.08 118.806 -110.180 2015-09-23T17:17:44.988506880 INFO 2025-06-26 21:38:39,923 calibrate.py _nudge_pos():1806 [1] 7151: 0.140 0.0001281 0.0000033 30 0.10 196.598 6.301 2015-09-23T17:19:37.990765568 INFO 2025-06-26 21:38:40,461 calibrate.py _nudge_pos():1806 [1] 7193: 0.140 0.0000193 -0.0000261 50 0.16 17.488 -29.637 2015-09-23T17:20:28.987271936 INFO 2025-06-26 21:38:43,232 calibrate.py _nudge_pos():1806 [1] 7432: 0.140 -0.0000100 -0.0000161 20 0.06 -23.320 -47.096 2015-09-23T17:24:30.990693888 INFO 2025-06-26 21:38:48,136 calibrate.py _nudge_pos():1862 [1] 7808: - - - 4 0.01 - - INFO 2025-06-26 21:38:48,136 calibrate.py _nudge_pos():1868 [1] Points in final series = 446703 INFO 2025-06-26 21:39:03,013 calibrate.py _hs2_process():2400 [1] Number of bad hs2 points: 5 of 357338 INFO 2025-06-26 21:39:05,793 calibrate.py _geometric_depth_correction():3423 [1] hs2: d_beg_time_diff: 6 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 21:39:09,263 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 28 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 21:39:11,933 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 28 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 21:39:11,939 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2015.265.03/ctd1.nc INFO 2025-06-26 21:39:11,941 calibrate.py _range_qc_combined_nc():898 [1] Setting 4 ctd1_salinity values to NaN INFO 2025-06-26 21:39:11,941 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-06-26 21:39:11,941 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1 INFO 2025-06-26 21:39:15,074 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 28 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 21:39:17,714 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 28 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 21:39:17,719 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2015.265.03/ctd2.nc WARNING 2025-06-26 21:39:17,721 calibrate.py _range_qc_combined_nc():890 [1] More than 500 (5163) ctd2_salinity values found outside of range. This may indicate a problem with the ctd2 data. INFO 2025-06-26 21:39:17,721 calibrate.py _range_qc_combined_nc():898 [1] Setting 5163 ctd2_salinity values to NaN INFO 2025-06-26 21:39:17,721 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-06-26 21:39:17,722 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2 ERROR 2025-06-26 21:39:17,781 calibrate.py process_logs():3542 [1] Error processing biolume: biolume has no orig_data - likely a missing or zero-sized .log file in missionlogs/2015.265.03 ERROR 2025-06-26 21:39:17,781 calibrate.py process_logs():3542 [1] Error processing lopc: lopc has no time coordinate - likely an incomplete lopc.nc file in missionlogs/2015.265.03 ERROR 2025-06-26 21:39:17,781 calibrate.py process_logs():3542 [1] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2015.265.03 INFO 2025-06-26 21:39:18,120 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2015.265.03/dorado_2015.265.03_cal.nc INFO 2025-06-26 21:39:18,385 calibrate.py write_netcdf():3512 [1] Data variables written: ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_salinity_onboard, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_salinity_onboard, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, hs2_bbp420, hs2_bbp700, hs2_depth, hs2_fl700, hs2_time, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, tailcone_propRpm, tailcone_time, time INFO 2025-06-26 21:39:18,393 process.py align():251 [1] Alignment steps for 2015.265.03 INFO 2025-06-26 21:39:18,443 align.py process_cal():139 [1] Processing dorado_2015.265.03_cal.nc from /data/auv_data/dorado/missionnetcdfs/2015.265.03 INFO 2025-06-26 21:39:18,566 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 21:39:18,579 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 21:39:18,888 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 21:39:18,909 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 21:39:19,197 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 21:39:19,214 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 21:39:19,449 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-06-26 21:39:19,450 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-06-26 21:39:19,574 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 21:39:19,593 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 21:39:19,851 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2015.265.03_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 21:39:19,864 align.py process_cal():249 [1] hs2_bbp420: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 21:39:20,111 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2015.265.03_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 21:39:20,123 align.py process_cal():249 [1] hs2_bbp700: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 21:39:20,363 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2015.265.03_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 21:39:20,375 align.py process_cal():249 [1] hs2_fl700: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 21:39:20,607 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2015.265.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 21:39:20,622 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 21:39:20,853 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2015.265.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 21:39:20,865 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 21:39:21,093 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2015.265.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 21:39:21,105 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 21:39:21,334 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2015.265.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 21:39:21,346 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 21:39:21,572 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2015.265.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 21:39:21,584 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 21:39:21,814 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2015.265.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 21:39:21,826 align.py process_cal():249 [1] ctd1_salinity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 21:39:22,058 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2015.265.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 21:39:22,073 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 21:39:22,304 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2015.265.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 21:39:22,315 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 21:39:22,546 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2015.265.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 21:39:22,558 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 21:39:22,787 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2015.265.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 21:39:22,799 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 21:39:23,029 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2015.265.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 21:39:23,040 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 21:39:23,280 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2015.265.03_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 21:39:23,292 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 21:39:23,521 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2015.265.03_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 21:39:23,536 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 21:39:23,767 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2015.265.03_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 21:39:23,779 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 21:39:24,010 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2015.265.03_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 21:39:24,022 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 21:39:24,254 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2015.265.03_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 21:39:24,266 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 21:39:24,496 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2015.265.03_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 21:39:24,508 align.py process_cal():249 [1] ctd2_salinity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 21:39:24,738 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2015.265.03_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 21:39:24,750 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 21:39:24,986 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2015.265.03_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 21:39:24,997 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 21:39:25,296 align.py process_cal():249 [1] isus_nitrate: instrument_sample_rate_hz = 0.78 INFO 2025-06-26 21:39:25,483 align.py process_cal():249 [1] isus_temp: instrument_sample_rate_hz = 0.78 INFO 2025-06-26 21:39:25,666 align.py process_cal():249 [1] isus_quality: instrument_sample_rate_hz = 0.78 INFO 2025-06-26 21:39:25,864 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 21:39:26,048 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2015.265.03/dorado_2015.265.03_align.nc INFO 2025-06-26 21:39:26,248 align.py write_netcdf():342 [1] Data variables written: ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_salinity_onboard, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_salinity_onboard, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, hs2_bbp420, hs2_bbp700, hs2_depth, hs2_fl700, hs2_latitude, hs2_longitude, hs2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-06-26 21:39:26,251 process.py resample():273 [1] Resampling steps for 2015.265.03 INFO 2025-06-26 21:39:26,252 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-06-26 21:39:26,287 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2015.265.03/dorado_2015.265.03_align.nc mission netCDF file INFO 2025-06-26 21:39:26,296 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2015.265.03/dorado_2015.265.03_align.nc mission netCDF file INFO 2025-06-26 21:39:26,298 resample.py get_mission_start_end():1145 [1] navigation: 2015-09-22T16:42:32.802007040 to 2015-09-23T17:31:33.791729920 (0 days 00:00:00.089993728 before mission_end) INFO 2025-06-26 21:39:26,301 resample.py get_mission_start_end():1145 [1] hs2 : 2015-09-22T16:41:57.734409216 to 2015-09-23T17:31:33.881723648 (0 days 00:00:00 before mission_end) INFO 2025-06-26 21:39:26,304 resample.py get_mission_start_end():1145 [1] ctd1 : 2015-09-22T16:42:20.232867840 to 2015-09-23T17:31:33.741733376 (0 days 00:00:00.139990272 before mission_end) INFO 2025-06-26 21:39:26,307 resample.py get_mission_start_end():1145 [1] ctd2 : 2015-09-22T16:42:20.102876928 to 2015-09-23T17:31:33.791729920 (0 days 00:00:00.089993728 before mission_end) INFO 2025-06-26 21:39:26,309 resample.py get_mission_start_end():1145 [1] isus : 2015-09-22T16:43:01.260057344 to 2015-09-23T17:31:33.221768960 (0 days 00:00:00.659954688 before mission_end) INFO 2025-06-26 21:39:26,311 resample.py get_mission_start_end():1145 [1] tailcone : 2015-09-22T16:41:51.894809344 to 2015-09-23T17:31:33.881723648 (0 days 00:00:00 before mission_end) INFO 2025-06-26 21:39:26,312 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2015.265.03/dorado_2015.265.03_align.nc mission netCDF file INFO 2025-06-26 21:39:26,313 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-06-26 21:39:27,192 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-06-26 21:39:27,339 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-06-26 21:39:27,475 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-06-26 21:39:27,612 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 21:39:27,728 resample.py resample_variable():1031 [1] Resampling hs2_bbp420 with frequency 1S following 3 point median filter INFO 2025-06-26 21:39:27,847 resample.py resample_variable():1031 [1] Resampling hs2_bbp700 with frequency 1S following 3 point median filter INFO 2025-06-26 21:39:27,961 resample.py resample_variable():1031 [1] Resampling hs2_fl700 with frequency 1S following 3 point median filter INFO 2025-06-26 21:39:28,076 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 21:39:28,184 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 21:39:28,299 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 21:39:28,407 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 21:39:28,515 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 21:39:28,623 resample.py resample_variable():1031 [1] Resampling ctd1_salinity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 21:39:28,733 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-06-26 21:39:28,844 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-06-26 21:39:28,954 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-06-26 21:39:29,062 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-06-26 21:39:29,176 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 21:39:29,287 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 21:39:29,414 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 21:39:29,524 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 21:39:29,634 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 21:39:29,747 resample.py resample_variable():1031 [1] Resampling ctd2_salinity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 21:39:29,860 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-06-26 21:39:29,899 resample.py resample_variable():1031 [1] Resampling isus_nitrate with frequency 1S following 3 point median filter INFO 2025-06-26 21:39:29,936 resample.py resample_variable():1031 [1] Resampling isus_temp with frequency 1S following 3 point median filter INFO 2025-06-26 21:39:29,970 resample.py resample_variable():1031 [1] Resampling isus_quality with frequency 1S following 3 point median filter INFO 2025-06-26 21:39:30,101 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-06-26 21:39:30,709 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2015.265.03/dorado_2015.265.03_1S.nc INFO 2025-06-26 21:39:33,969 create_products.py gulper_odv():401 [1] No gulper times found for 2015.265.03 INFO 2025-06-26 21:39:33,969 process.py archive():337 [1] Archiving steps for 2015.265.03 INFO 2025-06-26 21:39:33,969 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2015.265.03/dorado_2015.265.03, BASE_PATH = /data/auv_data INFO 2025-06-26 21:39:33,970 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2015.265.03/dorado_2015.265.03 files to /Volumes/AUVCTD/surveys/2015/netcdf INFO 2025-06-26 21:39:33,972 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2015/netcdf/dorado_2015.265.03_1S.nc INFO 2025-06-26 21:39:34,043 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2015.265.03/dorado_2015.265.03_1S.nc /Volumes/AUVCTD/surveys/2015/netcdf done. INFO 2025-06-26 21:39:34,044 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2015/netcdf/dorado_2015.265.03_cal.nc INFO 2025-06-26 21:39:34,401 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2015.265.03/dorado_2015.265.03_cal.nc /Volumes/AUVCTD/surveys/2015/netcdf done. INFO 2025-06-26 21:39:34,402 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2015/netcdf/dorado_2015.265.03_align.nc INFO 2025-06-26 21:39:34,764 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2015.265.03/dorado_2015.265.03_align.nc /Volumes/AUVCTD/surveys/2015/netcdf done. INFO 2025-06-26 21:39:34,886 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2015.265.03/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2015/2015265/2015.265.03 done. INFO 2025-06-26 21:39:34,996 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2015.265.03/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2015/2015265/2015.265.03 done. INFO 2025-06-26 21:39:35,014 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2015.265.03/gps.nc /Volumes/AUVCTD/missionnetcdfs/2015/2015265/2015.265.03 done. INFO 2025-06-26 21:39:35,118 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2015.265.03/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2015/2015265/2015.265.03 done. INFO 2025-06-26 21:39:35,463 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2015.265.03/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2015/2015265/2015.265.03 done. INFO 2025-06-26 21:39:35,481 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2015.265.03/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2015/2015265/2015.265.03 done. INFO 2025-06-26 21:39:35,613 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2015.265.03/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2015/2015265/2015.265.03 done. INFO 2025-06-26 21:39:35,692 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2015.265.03/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2015/2015265/2015.265.03 done. INFO 2025-06-26 21:39:35,759 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2015.265.03/lopc.nc /Volumes/AUVCTD/missionnetcdfs/2015/2015265/2015.265.03 done. INFO 2025-06-26 21:39:35,760 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-06-26 21:39:35,760 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2015.265.03/dorado_2015.265.03_processing.log /Volumes/AUVCTD/surveys/2015/netcdf