INFO 2025-06-26 17:49:27,879 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2005 --end_year 2014 --num_cores 1 -v --noinput --clobber INFO 2025-06-26 17:49:27,879 process.py process_mission():434 [1] dorado_info[mission]["comment"] = Brewer mission - Mapping vehicle tail plus Dorado nosecone - In Santa Monica Basin UTM Zone 11S - ctdToUse = ctd1 INFO 2025-06-26 17:49:27,879 process.py process_mission():449 [1] Processing AUVCTD mission 2011.155.04 by user docker_user on host eae60d30a712 INFO 2025-06-26 17:49:27,879 process.py download_process():165 [1] Download and processing steps for 2011.155.04 INFO 2025-06-26 17:49:27,879 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2011/2011155/2011.155.04 INFO 2025-06-26 17:49:27,879 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2011/2011155/2011.155.04 to /data/auv_data/dorado/missionlogs/2011.155.04 INFO 2025-06-26 17:49:34,165 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2011.155.04 INFO 2025-06-26 17:49:34,165 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2011.155.04/ctdDriver.log (20128438 bytes) INFO 2025-06-26 17:49:35,943 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2011.155.04/ctdDriver2.log (20128415 bytes) INFO 2025-06-26 17:49:37,608 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2011.155.04/gps.log (69260 bytes) INFO 2025-06-26 17:49:37,625 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2011.155.04/hydroscatlog.log (17611966 bytes) INFO 2025-06-26 17:49:39,671 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2011.155.04/navigation.log (71298406 bytes) INFO 2025-06-26 17:49:45,392 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2011.155.04/isuslog.log (1657685 bytes) INFO 2025-06-26 17:49:45,565 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2011.155.04/parosci.log (22962998 bytes) INFO 2025-06-26 17:49:47,690 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2011.155.04/tailCone.log (12586603 bytes) INFO 2025-06-26 17:49:49,313 logs2netcdfs.py download_process_logs():807 [1] Time to process: 15.15 seconds WARNING 2025-06-26 17:49:49,314 process.py download_process():196 [1] No lopc.bin file for 2011.155.04 INFO 2025-06-26 17:49:49,314 process.py calibrate():227 [1] Calibration steps for 2011.155.04 INFO 2025-06-26 17:49:49,667 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-06-26 17:49:49,669 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-06-26 17:49:50,309 calibrate.py _nudge_pos():1806 [1] 80: 0.120 0.0020537 -0.0034387 257479 858.26 0.368 -0.742 2011-06-05T12:43:03.236864512 INFO 2025-06-26 17:49:59,584 calibrate.py _nudge_pos():1862 [1] 930: - - - 0 0.00 - - INFO 2025-06-26 17:49:59,584 calibrate.py _nudge_pos():1868 [1] Points in final series = 262118 WARNING 2025-06-26 17:50:00,033 calibrate.py _depth_process():2193 [1] Expected sample_rate to be 10 Hz, instead it's 9.09 Hz INFO 2025-06-26 17:50:01,982 calibrate.py _geometric_depth_correction():3423 [1] hs2: d_beg_time_diff: 4 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 17:50:03,960 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 28 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 17:50:05,560 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 28 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 17:50:05,564 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2011.155.04/ctd1.nc INFO 2025-06-26 17:50:05,565 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd1_salinity values to NaN INFO 2025-06-26 17:50:05,565 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-06-26 17:50:05,566 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1 INFO 2025-06-26 17:50:07,399 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 28 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 17:50:09,003 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 28 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 17:50:09,007 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2011.155.04/ctd2.nc INFO 2025-06-26 17:50:09,009 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd2_salinity values to NaN INFO 2025-06-26 17:50:09,009 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-06-26 17:50:09,009 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2 ERROR 2025-06-26 17:50:09,056 calibrate.py process_logs():3542 [1] Error processing biolume: biolume has no orig_data - likely a missing or zero-sized .log file in missionlogs/2011.155.04 ERROR 2025-06-26 17:50:09,056 calibrate.py process_logs():3542 [1] Error processing lopc: lopc has no orig_data - likely a missing or zero-sized .log file in missionlogs/2011.155.04 ERROR 2025-06-26 17:50:09,056 calibrate.py process_logs():3542 [1] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2011.155.04 INFO 2025-06-26 17:50:09,255 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2011.155.04/dorado_2011.155.04_cal.nc INFO 2025-06-26 17:50:09,426 calibrate.py write_netcdf():3512 [1] Data variables written: ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_salinity_onboard, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_salinity_onboard, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_time, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, tailcone_propRpm, tailcone_time, time INFO 2025-06-26 17:50:09,430 process.py align():251 [1] Alignment steps for 2011.155.04 INFO 2025-06-26 17:50:09,467 align.py process_cal():139 [1] Processing dorado_2011.155.04_cal.nc from /data/auv_data/dorado/missionnetcdfs/2011.155.04 INFO 2025-06-26 17:50:09,536 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 17:50:09,543 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 17:50:09,706 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 17:50:09,715 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 17:50:09,881 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 17:50:09,891 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 17:50:09,991 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-06-26 17:50:09,991 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-06-26 17:50:10,057 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 17:50:10,066 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 17:50:10,226 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2011.155.04_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:50:10,235 align.py process_cal():249 [1] hs2_bbp470: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 17:50:10,377 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2011.155.04_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:50:10,386 align.py process_cal():249 [1] hs2_bbp676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 17:50:10,530 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2011.155.04_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:50:10,538 align.py process_cal():249 [1] hs2_fl676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 17:50:10,680 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2011.155.04_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:50:10,688 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 17:50:10,835 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2011.155.04_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:50:10,843 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 17:50:10,987 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2011.155.04_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:50:10,995 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 17:50:11,140 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2011.155.04_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:50:11,148 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 17:50:11,289 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2011.155.04_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:50:11,297 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 17:50:11,440 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2011.155.04_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:50:11,448 align.py process_cal():249 [1] ctd1_salinity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 17:50:11,590 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2011.155.04_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:50:11,598 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 17:50:11,743 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2011.155.04_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:50:11,751 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 17:50:11,893 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2011.155.04_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:50:11,901 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 17:50:12,046 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2011.155.04_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:50:12,055 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 17:50:12,196 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2011.155.04_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:50:12,204 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 17:50:12,349 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2011.155.04_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:50:12,358 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 17:50:12,502 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2011.155.04_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:50:12,511 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 17:50:12,654 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2011.155.04_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:50:12,663 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 17:50:12,805 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2011.155.04_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:50:12,814 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 17:50:12,957 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2011.155.04_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:50:12,966 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 17:50:13,107 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2011.155.04_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:50:13,116 align.py process_cal():249 [1] ctd2_salinity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 17:50:13,257 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2011.155.04_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:50:13,267 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 17:50:13,409 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2011.155.04_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:50:13,417 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 17:50:13,592 align.py process_cal():249 [1] isus_nitrate: instrument_sample_rate_hz = 0.99 INFO 2025-06-26 17:50:13,707 align.py process_cal():249 [1] isus_temp: instrument_sample_rate_hz = 0.99 INFO 2025-06-26 17:50:13,823 align.py process_cal():249 [1] isus_quality: instrument_sample_rate_hz = 0.99 INFO 2025-06-26 17:50:13,943 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 17:50:14,053 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2011.155.04/dorado_2011.155.04_align.nc INFO 2025-06-26 17:50:14,185 align.py write_netcdf():342 [1] Data variables written: ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_salinity_onboard, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_salinity_onboard, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_latitude, hs2_longitude, hs2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-06-26 17:50:14,187 process.py resample():273 [1] Resampling steps for 2011.155.04 INFO 2025-06-26 17:50:14,188 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-06-26 17:50:14,217 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2011.155.04/dorado_2011.155.04_align.nc mission netCDF file INFO 2025-06-26 17:50:14,224 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2011.155.04/dorado_2011.155.04_align.nc mission netCDF file INFO 2025-06-26 17:50:14,226 resample.py get_mission_start_end():1145 [1] navigation: 2011-06-04T22:23:48.678593536 to 2011-06-05T12:57:32.237333760 (0 days 00:00:00.099993344 before mission_end) INFO 2025-06-26 17:50:14,229 resample.py get_mission_start_end():1145 [1] hs2 : 2011-06-04T22:23:33.629624576 to 2011-06-05T12:57:32.137340672 (0 days 00:00:00.199986432 before mission_end) INFO 2025-06-26 17:50:14,231 resample.py get_mission_start_end():1145 [1] ctd1 : 2011-06-04T22:23:57.797968896 to 2011-06-05T12:57:32.307329280 (0 days 00:00:00.029997824 before mission_end) INFO 2025-06-26 17:50:14,233 resample.py get_mission_start_end():1145 [1] ctd2 : 2011-06-04T22:23:57.837966080 to 2011-06-05T12:57:32.207335936 (0 days 00:00:00.129991168 before mission_end) INFO 2025-06-26 17:50:14,235 resample.py get_mission_start_end():1145 [1] isus : 2011-06-04T22:24:43.964806400 to 2011-06-05T12:57:31.717369600 (0 days 00:00:00.619957504 before mission_end) INFO 2025-06-26 17:50:14,237 resample.py get_mission_start_end():1145 [1] tailcone : 2011-06-04T22:23:30.549835520 to 2011-06-05T12:57:32.337327104 (0 days 00:00:00 before mission_end) INFO 2025-06-26 17:50:14,238 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2011.155.04/dorado_2011.155.04_align.nc mission netCDF file INFO 2025-06-26 17:50:14,239 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-06-26 17:50:14,823 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-06-26 17:50:14,910 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-06-26 17:50:14,994 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-06-26 17:50:15,079 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 17:50:15,152 resample.py resample_variable():1031 [1] Resampling hs2_bbp470 with frequency 1S following 3 point median filter INFO 2025-06-26 17:50:15,224 resample.py resample_variable():1031 [1] Resampling hs2_bbp676 with frequency 1S following 3 point median filter INFO 2025-06-26 17:50:15,295 resample.py resample_variable():1031 [1] Resampling hs2_fl676 with frequency 1S following 3 point median filter INFO 2025-06-26 17:50:15,365 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 17:50:15,431 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 17:50:15,497 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 17:50:15,563 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 17:50:15,629 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 17:50:15,695 resample.py resample_variable():1031 [1] Resampling ctd1_salinity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 17:50:15,762 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-06-26 17:50:15,828 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-06-26 17:50:15,896 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-06-26 17:50:15,962 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-06-26 17:50:16,032 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 17:50:16,100 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 17:50:16,169 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 17:50:16,239 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 17:50:16,307 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 17:50:16,376 resample.py resample_variable():1031 [1] Resampling ctd2_salinity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 17:50:16,444 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-06-26 17:50:16,474 resample.py resample_variable():1031 [1] Resampling isus_nitrate with frequency 1S following 3 point median filter INFO 2025-06-26 17:50:16,501 resample.py resample_variable():1031 [1] Resampling isus_temp with frequency 1S following 3 point median filter INFO 2025-06-26 17:50:16,526 resample.py resample_variable():1031 [1] Resampling isus_quality with frequency 1S following 3 point median filter INFO 2025-06-26 17:50:16,605 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-06-26 17:50:17,002 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2011.155.04/dorado_2011.155.04_1S.nc INFO 2025-06-26 17:50:19,664 create_products.py _get_best_ctd():380 [1] ctdToUse = ctd1 INFO 2025-06-26 17:50:30,578 create_products.py gulper_odv():522 [1] Wrote 10 Gulper data lines to /data/auv_data/dorado/missionodvs/2011.155.04/dorado_2011.155.04_1S_Gulper.txt INFO 2025-06-26 17:50:30,578 process.py archive():337 [1] Archiving steps for 2011.155.04 INFO 2025-06-26 17:50:30,578 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2011.155.04/dorado_2011.155.04, BASE_PATH = /data/auv_data INFO 2025-06-26 17:50:30,579 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2011.155.04/dorado_2011.155.04 files to /Volumes/AUVCTD/surveys/2011/netcdf INFO 2025-06-26 17:50:30,580 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2011/netcdf/dorado_2011.155.04_1S.nc INFO 2025-06-26 17:50:30,615 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2011.155.04/dorado_2011.155.04_1S.nc /Volumes/AUVCTD/surveys/2011/netcdf done. INFO 2025-06-26 17:50:30,616 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2011/netcdf/dorado_2011.155.04_cal.nc INFO 2025-06-26 17:50:30,823 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2011.155.04/dorado_2011.155.04_cal.nc /Volumes/AUVCTD/surveys/2011/netcdf done. INFO 2025-06-26 17:50:30,823 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2011/netcdf/dorado_2011.155.04_align.nc INFO 2025-06-26 17:50:31,025 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2011.155.04/dorado_2011.155.04_align.nc /Volumes/AUVCTD/surveys/2011/netcdf done. INFO 2025-06-26 17:50:31,083 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2011.155.04/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2011/2011155/2011.155.04 done. INFO 2025-06-26 17:50:31,136 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2011.155.04/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2011/2011155/2011.155.04 done. INFO 2025-06-26 17:50:31,141 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2011.155.04/gps.nc /Volumes/AUVCTD/missionnetcdfs/2011/2011155/2011.155.04 done. INFO 2025-06-26 17:50:31,188 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2011.155.04/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2011/2011155/2011.155.04 done. INFO 2025-06-26 17:50:31,379 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2011.155.04/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2011/2011155/2011.155.04 done. INFO 2025-06-26 17:50:31,389 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2011.155.04/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2011/2011155/2011.155.04 done. INFO 2025-06-26 17:50:31,451 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2011.155.04/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2011/2011155/2011.155.04 done. INFO 2025-06-26 17:50:31,493 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2011.155.04/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2011/2011155/2011.155.04 done. INFO 2025-06-26 17:50:31,493 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-06-26 17:50:31,495 archive.py copy_to_AUVTCD():133 [1] Removing /Volumes/AUVCTD/surveys/2011/odv/dorado_2011.155.04_1S_Gulper.txt INFO 2025-06-26 17:50:31,499 archive.py copy_to_AUVTCD():136 [1] copyfile /data/auv_data/dorado/missionodvs/2011.155.04/dorado_2011.155.04_1S_Gulper.txt /Volumes/AUVCTD/surveys/2011/odv done. INFO 2025-06-26 17:50:31,499 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2011.155.04/dorado_2011.155.04_processing.log /Volumes/AUVCTD/surveys/2011/netcdf