INFO 2025-06-26 17:39:23,461 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2005 --end_year 2014 --num_cores 1 -v --noinput --clobber INFO 2025-06-26 17:39:23,461 process.py process_mission():434 [1] dorado_info[mission]["comment"] = Yanwu trigger on front servey mission in north bay. Repeat of yesterday's survey. It went longer this time. - ctdToUse = ctd1 INFO 2025-06-26 17:39:23,462 process.py process_mission():449 [1] Processing AUVCTD mission 2011.116.00 by user docker_user on host eae60d30a712 INFO 2025-06-26 17:39:23,462 process.py download_process():165 [1] Download and processing steps for 2011.116.00 INFO 2025-06-26 17:39:23,462 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2011/2011116/2011.116.00 INFO 2025-06-26 17:39:23,462 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2011/2011116/2011.116.00 to /data/auv_data/dorado/missionlogs/2011.116.00 INFO 2025-06-26 17:39:30,098 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2011.116.00 INFO 2025-06-26 17:39:30,098 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2011.116.00/ctdDriver.log (21626219 bytes) INFO 2025-06-26 17:39:31,719 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2011.116.00/ctdDriver2.log (21635615 bytes) INFO 2025-06-26 17:39:33,337 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2011.116.00/gps.log (309164 bytes) INFO 2025-06-26 17:39:33,379 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2011.116.00/hydroscatlog.log (18929002 bytes) INFO 2025-06-26 17:39:35,366 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2011.116.00/navigation.log (76608390 bytes) INFO 2025-06-26 17:39:40,909 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2011.116.00/isuslog.log (1401077 bytes) INFO 2025-06-26 17:39:41,052 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2011.116.00/parosci.log (22927910 bytes) INFO 2025-06-26 17:39:43,015 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2011.116.00/tailCone.log (13528171 bytes) INFO 2025-06-26 17:39:44,672 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2011.116.00/biolume.log (15742258 bytes) INFO 2025-06-26 17:39:46,203 logs2netcdfs.py write_variables():575 [1] Expanding original timeTag to time60Hz variable for raw data INFO 2025-06-26 17:39:46,975 logs2netcdfs.py download_process_logs():807 [1] Time to process: 16.88 seconds INFO 2025-06-26 17:39:46,975 process.py download_process():198 [1] Processing file /data/auv_data/dorado/missionlogs/2011.116.00/lopc.bin (234632000 bytes) INFO 2025-06-26 17:39:46,976 lopcToNetCDF.py main():2297 [1] Processing begun: Thu Jun 26 17:39:46 2025 INFO 2025-06-26 17:39:46,976 lopcToNetCDF.py constructTimestampList():1296 [1] parosci_nc = /data/auv_data/dorado/missionnetcdfs/2011.116.00/parosci.nc INFO 2025-06-26 17:39:46,976 lopcToNetCDF.py constructTimestampList():1297 [1] Using NetCDF4 to get start and end epoch seconds for this mission from this URL: INFO 2025-06-26 17:39:46,976 lopcToNetCDF.py constructTimestampList():1300 [1] /data/auv_data/dorado/missionnetcdfs/2011.116.00/parosci.nc INFO 2025-06-26 17:39:46,979 lopcToNetCDF.py constructTimestampList():1317 [1] From associated parosci.nc file: sensor_on_time = 1303853171.1, sensor_off_time = 1303909537.1 INFO 2025-06-26 17:39:46,979 lopcToNetCDF.py constructTimestampList():1322 [1] Duration is 56365 seconds. Expecting to read 112730 L frames from the lopc.bin file. INFO 2025-06-26 17:39:46,979 lopcToNetCDF.py constructTimestampList():1330 [1] recCount not passed in, assuming we'll have 112730 records from the lopc.bin file. INFO 2025-06-26 17:39:47,649 lopcToNetCDF.py main():2321 [1] Examined sibling parosci.nc file to find startTime = 2011-04-26 21:26:11 Z and endTime = 2011-04-27 13:05:37 Z with 112730 records expected to be read from lopc.bin INFO 2025-06-26 17:39:47,650 lopcToNetCDF.py unpackLOPCbin():723 [1] >>> Unpacking LOPC data from /data/auv_data/dorado/missionlogs/2011.116.00/lopc.bin INFO 2025-06-26 17:39:47,650 lopcToNetCDF.py unpackLOPCbin():724 [1] >>> Will write to NetCDF file /data/auv_data/dorado/missionnetcdfs/2011.116.00/lopc.nc INFO 2025-06-26 17:39:47,650 lopcToNetCDF.py openNetCDFFile():1861 [1] Will output NetCDF file to /data/auv_data/dorado/missionnetcdfs/2011.116.00/lopc.nc INFO 2025-06-26 17:39:47,650 lopcToNetCDF.py openNetCDFFile():1887 [1] missionName = 2011.116.00 INFO 2025-06-26 17:39:47,651 lopcToNetCDF.py openNetCDFFile():1910 [1] Writing bin axis for len(self.dataStructure['binSizeList']) = 994 ERROR 2025-06-26 17:39:47,662 process.py download_process():223 [1] UnexpectedAreaOfCode: Encountered unexpected area of code - lopc.nc file is probably corrupt INFO 2025-06-26 17:39:47,663 process.py calibrate():227 [1] Calibration steps for 2011.116.00 INFO 2025-06-26 17:39:48,062 calibrate.py _navigation_process():1637 [1] Removing points outside of Monterey Bay for 2011.116.00/navigation.nc INFO 2025-06-26 17:39:48,065 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('navigation_latitude', Range(min=36, max=37)), ('navigation_longitude', Range(min=-122.1, max=-121.7))] INFO 2025-06-26 17:39:48,065 calibrate.py _range_qc_combined_nc():916 [1] navigation_time: deleting 0 values found outside of above ranges: [] INFO 2025-06-26 17:39:48,076 calibrate.py _range_qc_combined_nc():916 [1] navigation_roll: deleting 0 values found outside of above ranges: [] INFO 2025-06-26 17:39:48,080 calibrate.py _range_qc_combined_nc():916 [1] navigation_pitch: deleting 0 values found outside of above ranges: [] INFO 2025-06-26 17:39:48,084 calibrate.py _range_qc_combined_nc():916 [1] navigation_yaw: deleting 0 values found outside of above ranges: [] INFO 2025-06-26 17:39:48,087 calibrate.py _range_qc_combined_nc():916 [1] navigation_posx: deleting 0 values found outside of above ranges: [] INFO 2025-06-26 17:39:48,091 calibrate.py _range_qc_combined_nc():916 [1] navigation_posy: deleting 0 values found outside of above ranges: [] INFO 2025-06-26 17:39:48,094 calibrate.py _range_qc_combined_nc():916 [1] navigation_depth: deleting 0 values found outside of above ranges: [] INFO 2025-06-26 17:39:48,098 calibrate.py _range_qc_combined_nc():916 [1] navigation_mWaterSpeed: deleting 0 values found outside of above ranges: [] INFO 2025-06-26 17:39:48,102 calibrate.py _range_qc_combined_nc():916 [1] navigation_latitude: deleting 0 values found outside of above ranges: [] INFO 2025-06-26 17:39:48,105 calibrate.py _range_qc_combined_nc():916 [1] navigation_longitude: deleting 0 values found outside of above ranges: [] INFO 2025-06-26 17:39:48,116 calibrate.py _range_qc_combined_nc():936 [1] Done range checking navigation INFO 2025-06-26 17:39:48,120 calibrate.py _gps_process():2069 [1] Removing points outside of Monterey Bay for 2011.116.00/gps.nc INFO 2025-06-26 17:39:48,121 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('gps_latitude', Range(min=36, max=37)), ('gps_longitude', Range(min=-122.1, max=-121.7))] INFO 2025-06-26 17:39:48,122 calibrate.py _range_qc_combined_nc():916 [1] gps_time: deleting 0 values found outside of above ranges: [] INFO 2025-06-26 17:39:48,123 calibrate.py _range_qc_combined_nc():916 [1] gps_latitude: deleting 0 values found outside of above ranges: [] INFO 2025-06-26 17:39:48,124 calibrate.py _range_qc_combined_nc():916 [1] gps_longitude: deleting 0 values found outside of above ranges: [] INFO 2025-06-26 17:39:48,128 calibrate.py _range_qc_combined_nc():936 [1] Done range checking gps INFO 2025-06-26 17:39:48,128 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-06-26 17:39:48,130 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-06-26 17:39:48,667 calibrate.py _nudge_pos():1806 [1] 83: 0.080 0.0000474 0.0000172 20 0.06 111.105 50.297 2011-04-26T21:27:36.316810496 INFO 2025-06-26 17:39:48,736 calibrate.py _nudge_pos():1806 [1] 90: 0.080 -0.0000173 -0.0000322 55 0.18 -14.230 -33.128 2011-04-26T21:27:53.315645952 INFO 2025-06-26 17:39:48,876 calibrate.py _nudge_pos():1806 [1] 104: 0.090 -0.0000047 -0.0007127 1820 6.06 -0.115 -21.781 2011-04-26T21:34:10.319819520 INFO 2025-06-26 17:39:49,869 calibrate.py _nudge_pos():1806 [1] 206: 0.090 0.0000044 -0.0000330 30 0.10 6.721 -63.273 2011-04-26T21:35:57.312489984 INFO 2025-06-26 17:39:49,919 calibrate.py _nudge_pos():1806 [1] 211: 0.090 0.0000241 -0.0000050 15 0.05 76.519 -19.659 2011-04-26T21:36:04.312010496 INFO 2025-06-26 17:39:49,959 calibrate.py _nudge_pos():1806 [1] 215: 0.100 0.0005831 -0.0058259 15225 50.75 1.704 -21.273 2011-04-26T22:26:52.313208064 INFO 2025-06-26 17:39:50,168 calibrate.py _nudge_pos():1806 [1] 236: 0.090 0.0000107 -0.0000139 15 0.05 33.854 -55.292 2011-04-26T22:27:15.311632640 INFO 2025-06-26 17:39:51,131 calibrate.py _nudge_pos():1806 [1] 334: 0.100 -0.0006128 -0.0056012 14690 48.98 -1.856 -21.190 2011-04-26T23:17:52.313583616 INFO 2025-06-26 17:39:51,200 calibrate.py _nudge_pos():1806 [1] 341: 0.100 0.0000044 0.0000043 15 0.05 14.041 17.081 2011-04-26T23:18:01.312967424 INFO 2025-06-26 17:39:51,259 calibrate.py _nudge_pos():1806 [1] 347: 0.100 -0.0000389 0.0000202 25 0.08 -72.189 46.772 2011-04-26T23:18:11.312282368 INFO 2025-06-26 17:39:51,965 calibrate.py _nudge_pos():1806 [1] 417: 0.100 -0.0000036 0.0000359 40 0.13 -4.136 51.205 2011-04-26T23:19:28.317007104 INFO 2025-06-26 17:39:52,235 calibrate.py _nudge_pos():1806 [1] 444: 0.110 -0.0006503 -0.0050523 13400 44.66 -2.160 -20.961 2011-04-27T00:04:34.311633664 INFO 2025-06-26 17:39:52,336 calibrate.py _nudge_pos():1806 [1] 454: 0.100 0.0001501 -0.0000391 60 0.20 113.238 -36.866 2011-04-27T00:04:55.310195200 INFO 2025-06-26 17:39:52,509 calibrate.py _nudge_pos():1806 [1] 471: 0.100 0.0000154 -0.0000101 50 0.16 13.954 -11.457 2011-04-27T00:05:21.318413568 INFO 2025-06-26 17:39:53,504 calibrate.py _nudge_pos():1806 [1] 570: 0.100 -0.0005701 -0.0053817 13640 45.46 -1.860 -21.935 2011-04-27T00:52:28.314750976 INFO 2025-06-26 17:39:54,387 calibrate.py _nudge_pos():1806 [1] 659: 0.100 0.0000241 0.0000165 25 0.08 44.643 38.232 2011-04-27T00:54:02.318311168 INFO 2025-06-26 17:39:54,500 calibrate.py _nudge_pos():1806 [1] 670: 0.100 -0.0004802 -0.0051905 13850 46.16 -1.543 -20.835 2011-04-27T01:40:22.317868288 INFO 2025-06-26 17:39:55,757 calibrate.py _nudge_pos():1806 [1] 795: 0.110 -0.0006407 -0.0042492 11645 38.81 -2.448 -20.286 2011-04-27T02:21:16.319757824 INFO 2025-06-26 17:39:55,828 calibrate.py _nudge_pos():1806 [1] 802: 0.110 0.0000263 -0.0000256 30 0.10 40.421 -49.054 2011-04-27T02:21:28.318935552 INFO 2025-06-26 17:39:56,794 calibrate.py _nudge_pos():1806 [1] 898: 0.120 -0.0005872 -0.0014323 5225 17.41 -5.002 -15.242 2011-04-27T02:40:28.310840832 INFO 2025-06-26 17:39:56,867 calibrate.py _nudge_pos():1806 [1] 905: 0.110 -0.0000172 0.0000108 30 0.10 -26.377 20.649 2011-04-27T02:40:40.320018176 INFO 2025-06-26 17:39:57,143 calibrate.py _nudge_pos():1806 [1] 932: 0.110 0.0000018 -0.0000275 15 0.05 5.790 -109.178 2011-04-27T02:41:09.318031616 INFO 2025-06-26 17:39:57,972 calibrate.py _nudge_pos():1806 [1] 1012: 0.110 -0.0014248 -0.0001489 14790 49.30 -4.285 -0.560 2011-04-27T03:31:46.319982848 INFO 2025-06-26 17:39:59,164 calibrate.py _nudge_pos():1806 [1] 1128: 0.120 -0.0007307 -0.0001087 8425 28.08 -3.857 -0.717 2011-04-27T04:01:46.316674560 INFO 2025-06-26 17:39:59,206 calibrate.py _nudge_pos():1806 [1] 1132: 0.120 0.0000108 -0.0000134 70 0.23 6.966 -10.760 2011-04-27T04:02:03.315510016 INFO 2025-06-26 17:40:00,400 calibrate.py _nudge_pos():1806 [1] 1247: 0.120 -0.0003896 -0.0001262 4745 15.81 -3.652 -1.478 2011-04-27T04:19:46.312689664 INFO 2025-06-26 17:40:01,395 calibrate.py _nudge_pos():1806 [1] 1343: 0.130 -0.0006891 -0.0059834 13485 44.95 -2.273 -24.668 2011-04-27T05:06:18.311424768 INFO 2025-06-26 17:40:02,665 calibrate.py _nudge_pos():1806 [1] 1461: 0.130 0.0005617 -0.0065210 17085 56.95 1.462 -21.219 2011-04-27T06:05:12.319328512 INFO 2025-06-26 17:40:03,861 calibrate.py _nudge_pos():1806 [1] 1575: 0.140 0.0010716 -0.0067399 16615 55.38 2.868 -22.552 2011-04-27T07:02:28.313946880 INFO 2025-06-26 17:40:04,856 calibrate.py _nudge_pos():1806 [1] 1671: 0.140 -0.0000056 -0.0000554 30 0.10 -8.640 -106.201 2011-04-27T07:04:09.317027584 INFO 2025-06-26 17:40:05,078 calibrate.py _nudge_pos():1806 [1] 1692: 0.150 0.0007011 -0.0060253 14215 47.38 2.193 -23.565 2011-04-27T07:51:52.310899200 INFO 2025-06-26 17:40:06,095 calibrate.py _nudge_pos():1806 [1] 1789: 0.140 -0.0000430 0.0000217 15 0.05 -136.687 86.176 2011-04-27T07:53:32.314048512 INFO 2025-06-26 17:40:06,138 calibrate.py _nudge_pos():1806 [1] 1793: 0.140 -0.0000131 0.0000106 20 0.06 -30.676 30.907 2011-04-27T07:53:39.313569024 INFO 2025-06-26 17:40:06,233 calibrate.py _nudge_pos():1806 [1] 1802: 0.160 0.0009460 -0.0061277 14660 48.86 2.870 -23.238 2011-04-27T08:42:40.312096768 INFO 2025-06-26 17:40:07,514 calibrate.py _nudge_pos():1806 [1] 1924: 0.160 0.0011427 -0.0015181 5305 17.68 9.580 -15.911 2011-04-27T09:02:22.311124224 INFO 2025-06-26 17:40:08,789 calibrate.py _nudge_pos():1806 [1] 2044: 0.150 -0.0039902 -0.0025579 15695 52.31 -11.302 -9.061 2011-04-27T09:56:40.317935360 INFO 2025-06-26 17:40:08,812 calibrate.py _nudge_pos():1806 [1] 2046: 0.150 -0.0000921 -0.0000809 40 0.13 -105.018 -115.305 2011-04-27T09:56:49.317319168 INFO 2025-06-26 17:40:10,298 calibrate.py _nudge_pos():1806 [1] 2185: 0.150 -0.0016029 -0.0005678 7335 24.45 -9.714 -4.303 2011-04-27T10:23:34.317369088 INFO 2025-06-26 17:40:10,352 calibrate.py _nudge_pos():1806 [1] 2190: 0.150 -0.0000038 -0.0000073 65 0.21 -2.647 -6.300 2011-04-27T10:23:51.316204544 INFO 2025-06-26 17:40:11,709 calibrate.py _nudge_pos():1806 [1] 2317: 0.160 -0.0008322 -0.0004252 3935 13.11 -9.401 -6.008 2011-04-27T10:39:04.313659904 INFO 2025-06-26 17:40:12,980 calibrate.py _nudge_pos():1806 [1] 2438: 0.160 0.0010416 -0.0060789 13740 45.80 3.369 -24.596 2011-04-27T11:26:52.317188352 INFO 2025-06-26 17:40:14,405 calibrate.py _nudge_pos():1806 [1] 2571: 0.160 -0.0007596 -0.0033451 8460 28.20 -3.991 -21.983 2011-04-27T11:57:16.312236032 INFO 2025-06-26 17:40:15,435 calibrate.py _nudge_pos():1806 [1] 2667: 0.160 0.0000090 0.0000139 65 0.21 6.224 12.106 2011-04-27T11:59:04.314837248 INFO 2025-06-26 17:40:15,499 calibrate.py _nudge_pos():1806 [1] 2673: 0.170 -0.0001976 -0.0034426 7955 26.51 -1.104 -24.060 2011-04-27T12:25:40.315503872 INFO 2025-06-26 17:40:16,747 calibrate.py _nudge_pos():1806 [1] 2791: 0.170 -0.0000368 -0.0016618 3945 13.15 -0.414 -23.423 2011-04-27T12:40:46.313438720 INFO 2025-06-26 17:40:32,729 calibrate.py _nudge_pos():1862 [1] 4244: - - - 4 0.01 - - INFO 2025-06-26 17:40:32,729 calibrate.py _nudge_pos():1868 [1] Points in final series = 281639 WARNING 2025-06-26 17:40:33,092 calibrate.py _depth_process():2193 [1] Expected sample_rate to be 10 Hz, instead it's 8.33 Hz INFO 2025-06-26 17:40:33,460 calibrate.py _hs2_process():2400 [1] Number of bad hs2 points: 5 of 225333 INFO 2025-06-26 17:40:35,201 calibrate.py _geometric_depth_correction():3423 [1] hs2: d_beg_time_diff: 5 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 17:40:37,332 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 50 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 17:40:39,042 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 50 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 17:40:39,045 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2011.116.00/ctd1.nc INFO 2025-06-26 17:40:39,047 calibrate.py _range_qc_combined_nc():898 [1] Setting 66 ctd1_salinity values to NaN INFO 2025-06-26 17:40:39,047 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-06-26 17:40:39,047 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1 INFO 2025-06-26 17:40:41,027 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 26 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 17:40:42,710 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 26 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 17:40:42,714 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2011.116.00/ctd2.nc WARNING 2025-06-26 17:40:42,721 calibrate.py _range_qc_combined_nc():890 [1] More than 500 (225364) ctd2_salinity values found outside of range. This may indicate a problem with the ctd2 data. INFO 2025-06-26 17:40:42,721 calibrate.py _range_qc_combined_nc():898 [1] Setting 225364 ctd2_salinity values to NaN INFO 2025-06-26 17:40:42,722 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-06-26 17:40:42,723 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2 INFO 2025-06-26 17:40:42,804 calibrate.py _biolume_process():3128 [1] Checking for non-monotonic increasing time60hz INFO 2025-06-26 17:40:45,321 calibrate.py _biolume_process():3131 [1] Removing non-monotonic increasing time60hz at indices: [60 61] INFO 2025-06-26 17:40:45,828 calibrate.py _geometric_depth_correction():3423 [1] biolume: d_beg_time_diff: -1 seconds, d_end_time_diff: -1 seconds ERROR 2025-06-26 17:41:37,166 calibrate.py process_logs():3542 [1] Error processing lopc: lopc has no time coordinate - likely an incomplete lopc.nc file in missionlogs/2011.116.00 ERROR 2025-06-26 17:41:37,166 calibrate.py process_logs():3542 [1] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2011.116.00 INFO 2025-06-26 17:41:37,382 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2011.116.00/dorado_2011.116.00_cal.nc INFO 2025-06-26 17:41:37,702 calibrate.py write_netcdf():3512 [1] Data variables written: biolume_avg_biolume, biolume_depth, biolume_flow, biolume_raw, biolume_time, biolume_time60hz, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_salinity_onboard, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_salinity_onboard, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, hs2_bbp420, hs2_bbp700, hs2_depth, hs2_fl700, hs2_time, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, tailcone_propRpm, tailcone_time, time INFO 2025-06-26 17:41:37,710 process.py align():251 [1] Alignment steps for 2011.116.00 INFO 2025-06-26 17:41:37,861 align.py process_cal():139 [1] Processing dorado_2011.116.00_cal.nc from /data/auv_data/dorado/missionnetcdfs/2011.116.00 INFO 2025-06-26 17:41:37,936 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 17:41:37,944 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 17:41:38,131 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 17:41:38,142 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 17:41:38,318 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 17:41:38,331 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 17:41:38,438 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-06-26 17:41:38,438 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-06-26 17:41:38,506 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 17:41:38,516 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 17:41:38,688 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2011.116.00_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:41:38,697 align.py process_cal():249 [1] hs2_bbp420: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 17:41:38,847 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2011.116.00_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:41:38,856 align.py process_cal():249 [1] hs2_bbp700: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 17:41:39,008 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2011.116.00_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:41:39,017 align.py process_cal():249 [1] hs2_fl700: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 17:41:39,168 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2011.116.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:41:39,176 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 17:41:39,332 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2011.116.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:41:39,341 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 17:41:39,493 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2011.116.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:41:39,502 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 17:41:39,664 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2011.116.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:41:39,673 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 17:41:39,825 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2011.116.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:41:39,834 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 17:41:39,989 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2011.116.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:41:39,998 align.py process_cal():249 [1] ctd1_salinity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 17:41:40,153 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2011.116.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:41:40,166 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 17:41:40,325 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2011.116.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:41:40,334 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 17:41:40,486 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2011.116.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:41:40,495 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 17:41:40,648 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2011.116.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:41:40,657 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 17:41:40,810 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2011.116.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:41:40,818 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 17:41:40,976 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2011.116.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:41:40,985 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 17:41:41,138 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2011.116.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:41:41,149 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 17:41:41,304 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2011.116.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:41:41,314 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 17:41:41,477 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2011.116.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:41:41,486 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 17:41:41,638 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2011.116.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:41:41,647 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 17:41:41,798 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2011.116.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:41:41,807 align.py process_cal():249 [1] ctd2_salinity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 17:41:41,958 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2011.116.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:41:41,967 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 17:41:42,123 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2011.116.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:41:42,131 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 17:41:42,314 align.py process_cal():249 [1] isus_nitrate: instrument_sample_rate_hz = 0.78 INFO 2025-06-26 17:41:42,430 align.py process_cal():249 [1] isus_temp: instrument_sample_rate_hz = 0.78 INFO 2025-06-26 17:41:42,549 align.py process_cal():249 [1] isus_quality: instrument_sample_rate_hz = 0.78 INFO 2025-06-26 17:41:42,669 align.py process_cal():249 [1] biolume_flow: instrument_sample_rate_hz = 0.98 INFO 2025-06-26 17:41:42,798 align.py process_cal():249 [1] biolume_avg_biolume: instrument_sample_rate_hz = 0.98 INFO 2025-06-26 17:41:43,025 align.py process_cal():249 [1] biolume_raw: instrument_sample_rate_hz = 58.99 INFO 2025-06-26 17:41:44,467 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 17:41:44,586 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2011.116.00/dorado_2011.116.00_align.nc INFO 2025-06-26 17:41:44,897 align.py write_netcdf():342 [1] Data variables written: biolume_avg_biolume, biolume_depth, biolume_flow, biolume_latitude, biolume_longitude, biolume_raw, biolume_time, biolume_time60hz, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_salinity_onboard, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_salinity_onboard, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, hs2_bbp420, hs2_bbp700, hs2_depth, hs2_fl700, hs2_latitude, hs2_longitude, hs2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-06-26 17:41:44,900 process.py resample():273 [1] Resampling steps for 2011.116.00 INFO 2025-06-26 17:41:44,901 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-06-26 17:41:44,959 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2011.116.00/dorado_2011.116.00_align.nc mission netCDF file INFO 2025-06-26 17:41:44,967 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2011.116.00/dorado_2011.116.00_align.nc mission netCDF file INFO 2025-06-26 17:41:44,970 resample.py get_mission_start_end():1145 [1] navigation: 2011-04-26T21:26:48.330097920 to 2011-04-27T13:05:37.111311872 (0 days 00:00:00.009999616 before mission_end) INFO 2025-06-26 17:41:44,972 resample.py get_mission_start_end():1145 [1] hs2 : 2011-04-26T21:26:16.782258944 to 2011-04-27T13:05:36.901326336 (0 days 00:00:00.219985152 before mission_end) INFO 2025-06-26 17:41:44,975 resample.py get_mission_start_end():1145 [1] ctd1 : 2011-04-26T21:27:02.079155968 to 2011-04-27T13:05:37.101312512 (0 days 00:00:00.019998976 before mission_end) INFO 2025-06-26 17:41:44,977 resample.py get_mission_start_end():1145 [1] ctd2 : 2011-04-26T21:26:37.660828928 to 2011-04-27T13:05:37.121311488 (0 days 00:00:00 before mission_end) INFO 2025-06-26 17:41:44,979 resample.py get_mission_start_end():1145 [1] isus : 2011-04-26T21:27:26.747465984 to 2011-04-27T13:05:35.931393024 (0 days 00:00:01.189918464 before mission_end) INFO 2025-06-26 17:41:44,981 resample.py get_mission_start_end():1145 [1] biolume : 2011-04-26T21:26:10.362664448 to 2011-04-27T13:05:35.731372288 (0 days 00:00:01.389939200 before mission_end) INFO 2025-06-26 17:41:44,983 resample.py get_mission_start_end():1145 [1] tailcone : 2011-04-26T21:26:11.962589184 to 2011-04-27T13:05:36.951323136 (0 days 00:00:00.169988352 before mission_end) INFO 2025-06-26 17:41:44,984 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2011.116.00/dorado_2011.116.00_align.nc mission netCDF file INFO 2025-06-26 17:41:44,984 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-06-26 17:41:45,559 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-06-26 17:41:45,650 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-06-26 17:41:45,740 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-06-26 17:41:45,829 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 17:41:45,906 resample.py resample_variable():1031 [1] Resampling hs2_bbp420 with frequency 1S following 3 point median filter INFO 2025-06-26 17:41:45,982 resample.py resample_variable():1031 [1] Resampling hs2_bbp700 with frequency 1S following 3 point median filter INFO 2025-06-26 17:41:46,059 resample.py resample_variable():1031 [1] Resampling hs2_fl700 with frequency 1S following 3 point median filter INFO 2025-06-26 17:41:46,133 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 17:41:46,204 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 17:41:46,278 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 17:41:46,348 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 17:41:46,418 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 17:41:46,488 resample.py resample_variable():1031 [1] Resampling ctd1_salinity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 17:41:46,558 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-06-26 17:41:46,628 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-06-26 17:41:46,698 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-06-26 17:41:46,769 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-06-26 17:41:46,842 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 17:41:46,919 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 17:41:47,418 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 17:41:47,493 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 17:41:47,567 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 17:41:47,641 resample.py resample_variable():1031 [1] Resampling ctd2_salinity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 17:41:47,715 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-06-26 17:41:47,745 resample.py resample_variable():1031 [1] Resampling isus_nitrate with frequency 1S following 3 point median filter INFO 2025-06-26 17:41:47,771 resample.py resample_variable():1031 [1] Resampling isus_temp with frequency 1S following 3 point median filter INFO 2025-06-26 17:41:47,795 resample.py resample_variable():1031 [1] Resampling isus_quality with frequency 1S following 3 point median filter INFO 2025-06-26 17:41:47,820 resample.py resample_variable():1031 [1] Resampling biolume_flow with frequency 1S following 3 point median filter INFO 2025-06-26 17:41:47,845 resample.py resample_variable():1031 [1] Resampling biolume_avg_biolume with frequency 1S following 3 point median filter INFO 2025-06-26 17:41:47,852 resample.py set_proxy_parameters():520 [1] Setting biolume proxy parameters for period4 INFO 2025-06-26 17:41:47,853 resample.py add_biolume_proxies():549 [1] Adding biolume proxy variables computed from biolume_raw INFO 2025-06-26 17:41:49,975 resample.py add_biolume_proxies():595 [1] Using flash_threshold = 1.0000e+11 INFO 2025-06-26 17:41:50,676 resample.py add_biolume_proxies():638 [1] Computing flashes per liter: nbflash_high, nbflash_low INFO 2025-06-26 17:41:50,898 resample.py add_biolume_proxies():666 [1] Saving flash intensity: biolume_intflash - the upper bound of the background envelope INFO 2025-06-26 17:41:50,987 resample.py add_biolume_proxies():683 [1] Saving Background bioluminescence (dinoflagellates proxy) INFO 2025-06-26 17:41:51,052 resample.py select_nighttime_bl_raw():432 [1] No sunset or sunrise found during this mission. INFO 2025-06-26 17:41:51,053 resample.py add_biolume_proxies():694 [1] No nighttime_bl_raw data to compute adinos, diatoms, hdinos proxies INFO 2025-06-26 17:41:51,153 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-06-26 17:41:51,589 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2011.116.00/dorado_2011.116.00_1S.nc INFO 2025-06-26 17:41:54,504 create_products.py _get_best_ctd():380 [1] ctdToUse = ctd1 INFO 2025-06-26 17:42:04,942 create_products.py gulper_odv():522 [1] Wrote 9 Gulper data lines to /data/auv_data/dorado/missionodvs/2011.116.00/dorado_2011.116.00_1S_Gulper.txt INFO 2025-06-26 17:42:04,943 process.py archive():337 [1] Archiving steps for 2011.116.00 INFO 2025-06-26 17:42:04,943 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2011.116.00/dorado_2011.116.00, BASE_PATH = /data/auv_data INFO 2025-06-26 17:42:04,945 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2011.116.00/dorado_2011.116.00 files to /Volumes/AUVCTD/surveys/2011/netcdf INFO 2025-06-26 17:42:04,945 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2011/netcdf/dorado_2011.116.00_1S.nc INFO 2025-06-26 17:42:04,996 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2011.116.00/dorado_2011.116.00_1S.nc /Volumes/AUVCTD/surveys/2011/netcdf done. INFO 2025-06-26 17:42:04,997 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2011/netcdf/dorado_2011.116.00_cal.nc INFO 2025-06-26 17:42:05,323 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2011.116.00/dorado_2011.116.00_cal.nc /Volumes/AUVCTD/surveys/2011/netcdf done. INFO 2025-06-26 17:42:05,324 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2011/netcdf/dorado_2011.116.00_align.nc INFO 2025-06-26 17:42:05,810 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2011.116.00/dorado_2011.116.00_align.nc /Volumes/AUVCTD/surveys/2011/netcdf done. INFO 2025-06-26 17:42:05,872 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2011.116.00/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2011/2011116/2011.116.00 done. INFO 2025-06-26 17:42:05,927 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2011.116.00/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2011/2011116/2011.116.00 done. INFO 2025-06-26 17:42:05,932 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2011.116.00/gps.nc /Volumes/AUVCTD/missionnetcdfs/2011/2011116/2011.116.00 done. INFO 2025-06-26 17:42:05,984 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2011.116.00/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2011/2011116/2011.116.00 done. INFO 2025-06-26 17:42:06,182 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2011.116.00/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2011/2011116/2011.116.00 done. INFO 2025-06-26 17:42:06,191 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2011.116.00/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2011/2011116/2011.116.00 done. INFO 2025-06-26 17:42:06,250 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2011.116.00/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2011/2011116/2011.116.00 done. INFO 2025-06-26 17:42:06,300 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2011.116.00/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2011/2011116/2011.116.00 done. INFO 2025-06-26 17:42:06,445 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2011.116.00/biolume.nc /Volumes/AUVCTD/missionnetcdfs/2011/2011116/2011.116.00 done. INFO 2025-06-26 17:42:06,450 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2011.116.00/lopc.nc /Volumes/AUVCTD/missionnetcdfs/2011/2011116/2011.116.00 done. INFO 2025-06-26 17:42:06,450 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-06-26 17:42:06,452 archive.py copy_to_AUVTCD():133 [1] Removing /Volumes/AUVCTD/surveys/2011/odv/dorado_2011.116.00_1S_Gulper.txt INFO 2025-06-26 17:42:06,457 archive.py copy_to_AUVTCD():136 [1] copyfile /data/auv_data/dorado/missionodvs/2011.116.00/dorado_2011.116.00_1S_Gulper.txt /Volumes/AUVCTD/surveys/2011/odv done. INFO 2025-06-26 17:42:06,457 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2011.116.00/dorado_2011.116.00_processing.log /Volumes/AUVCTD/surveys/2011/netcdf