INFO 2025-06-26 17:13:17,825 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2005 --end_year 2014 --num_cores 1 -v --noinput --clobber INFO 2025-06-26 17:13:17,825 process.py process_mission():434 [1] dorado_info[mission]["comment"] = Out and back from M1 - ctdToUse = ctd1 INFO 2025-06-26 17:13:17,825 process.py process_mission():449 [1] Processing AUVCTD mission 2010.341.00 by user docker_user on host eae60d30a712 INFO 2025-06-26 17:13:17,825 process.py download_process():165 [1] Download and processing steps for 2010.341.00 INFO 2025-06-26 17:13:17,825 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2010/2010341/2010.341.00 INFO 2025-06-26 17:13:17,825 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2010/2010341/2010.341.00 to /data/auv_data/dorado/missionlogs/2010.341.00 INFO 2025-06-26 17:13:20,450 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2010.341.00 INFO 2025-06-26 17:13:20,450 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.341.00/ctdDriver.log (4565099 bytes) INFO 2025-06-26 17:13:20,781 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/dorado/missionlogs/2010.341.00/ctdDriver.log: [ 176 222 458 651 792 940 977 1265 1346 1484 1864 1925 1950 2057 3010 3162 3187 4786 4789 5071 5346 6778 6987 7186 7571 7890 8328 12801 14150 16534 18144 21667 22098 30171 30940 31568 31582 31736 32615 33355 34856 37656 41159] INFO 2025-06-26 17:13:20,793 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.341.00/ctdDriver2.log (4574303 bytes) INFO 2025-06-26 17:13:21,111 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/dorado/missionlogs/2010.341.00/ctdDriver2.log: [ 279 325 560 683 753 895 1043 1080 1320 1449 1586 1966 2027 2039 2158 2221 2375 3263 3289 3476 4889 4892 4904 5174 5449 6359 7287 7990 8428 12899 14248 16631 16666 18239 21762 22194 26877 28940 30266 31036 31664 31678 31832 32644 34953 37753] INFO 2025-06-26 17:13:21,131 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.341.00/gps.log (64580 bytes) INFO 2025-06-26 17:13:21,146 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.341.00/hydroscatlog.log (4016986 bytes) INFO 2025-06-26 17:13:21,551 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/dorado/missionlogs/2010.341.00/hydroscatlog.log: [ 4 5 6 89 101 321 381 427 595 640 665 792 812 815 847 859 897 1007 1136 1479 1480 1562 1586 1702 1783 2083 2144 2169 2170 2275 2343 2452 2469 2470 2501 3238 3419 3573 3615 4091 4329 4722 4824 5022 5584 5585 5744 7022 7430 7526 7854 8136 8476 8576 12059 14404 16787 16823 16899 17252 19520 20293 21469 21920 21926 24029 24339 24580 25806 29229 30604 31202 31831 31999 32810 32879 33619 35120 36350 37921 39349 39673 43466 44639 45397 47611] INFO 2025-06-26 17:13:21,563 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.341.00/navigation.log (14006018 bytes) INFO 2025-06-26 17:13:22,577 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.341.00/isuslog.log (296021 bytes) INFO 2025-06-26 17:13:22,609 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.341.00/parosci.log (5222102 bytes) INFO 2025-06-26 17:13:23,059 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.341.00/tailCone.log (2853067 bytes) INFO 2025-06-26 17:13:23,412 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.341.00/biolume.log (3345374 bytes) INFO 2025-06-26 17:13:23,739 logs2netcdfs.py write_variables():575 [1] Expanding original timeTag to time60Hz variable for raw data INFO 2025-06-26 17:13:23,907 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/dorado/missionlogs/2010.341.00/biolume.log: [1] INFO 2025-06-26 17:13:23,923 logs2netcdfs.py download_process_logs():807 [1] Time to process: 3.47 seconds INFO 2025-06-26 17:13:23,923 process.py download_process():198 [1] Processing file /data/auv_data/dorado/missionlogs/2010.341.00/lopc.bin (14292000 bytes) INFO 2025-06-26 17:13:23,923 lopcToNetCDF.py main():2297 [1] Processing begun: Thu Jun 26 17:13:23 2025 INFO 2025-06-26 17:13:23,923 lopcToNetCDF.py constructTimestampList():1296 [1] parosci_nc = /data/auv_data/dorado/missionnetcdfs/2010.341.00/parosci.nc INFO 2025-06-26 17:13:23,924 lopcToNetCDF.py constructTimestampList():1297 [1] Using NetCDF4 to get start and end epoch seconds for this mission from this URL: INFO 2025-06-26 17:13:23,924 lopcToNetCDF.py constructTimestampList():1300 [1] /data/auv_data/dorado/missionnetcdfs/2010.341.00/parosci.nc INFO 2025-06-26 17:13:23,927 lopcToNetCDF.py constructTimestampList():1317 [1] From associated parosci.nc file: sensor_on_time = 1291738256.5, sensor_off_time = 1291750219.4 INFO 2025-06-26 17:13:23,927 lopcToNetCDF.py constructTimestampList():1322 [1] Duration is 11962 seconds. Expecting to read 23924 L frames from the lopc.bin file. INFO 2025-06-26 17:13:23,927 lopcToNetCDF.py constructTimestampList():1330 [1] recCount not passed in, assuming we'll have 23924 records from the lopc.bin file. INFO 2025-06-26 17:13:24,066 lopcToNetCDF.py main():2321 [1] Examined sibling parosci.nc file to find startTime = 2010-12-07 16:10:56 Z and endTime = 2010-12-07 19:30:19 Z with 23924 records expected to be read from lopc.bin INFO 2025-06-26 17:13:24,066 lopcToNetCDF.py unpackLOPCbin():723 [1] >>> Unpacking LOPC data from /data/auv_data/dorado/missionlogs/2010.341.00/lopc.bin INFO 2025-06-26 17:13:24,066 lopcToNetCDF.py unpackLOPCbin():724 [1] >>> Will write to NetCDF file /data/auv_data/dorado/missionnetcdfs/2010.341.00/lopc.nc INFO 2025-06-26 17:13:24,067 lopcToNetCDF.py openNetCDFFile():1861 [1] Will output NetCDF file to /data/auv_data/dorado/missionnetcdfs/2010.341.00/lopc.nc INFO 2025-06-26 17:13:24,067 lopcToNetCDF.py openNetCDFFile():1887 [1] missionName = 2010.341.00 INFO 2025-06-26 17:13:24,068 lopcToNetCDF.py openNetCDFFile():1910 [1] Writing bin axis for len(self.dataStructure['binSizeList']) = 994 INFO 2025-06-26 17:13:24,128 lopcToNetCDF.py unpackLOPCbin():951 [1] L Frames sample M Frames ShortLFrame LBeforeMEnd MBeforeLEnd UnknownFrame Garbled L INFO 2025-06-26 17:13:24,128 lopcToNetCDF.py unpackLOPCbin():969 [1] Count Count Count Error Error Error Error Error INFO 2025-06-26 17:13:24,128 lopcToNetCDF.py unpackLOPCbin():987 [1] -------- -------- -------- ----------- ----------- ----------- ----------- ------------ INFO 2025-06-26 17:13:33,701 lopcToNetCDF.py unpackLOPCbin():1013 [1] 10000 10000 25649 0 0 0 0 0 9.6 seconds, last L Frame: 23924 INFO 2025-06-26 17:13:42,106 lopcToNetCDF.py unpackLOPCbin():1013 [1] 20000 20000 47887 0 0 0 0 0 8.4 seconds, last L Frame: 23924 INFO 2025-06-26 17:13:43,546 lopcToNetCDF.py main():2345 [1] >>> Done reading file. INFO 2025-06-26 17:13:43,547 lopcToNetCDF.py main():2346 [1] lFrameCount = 23929, mFrameCount = 50728 INFO 2025-06-26 17:13:43,547 lopcToNetCDF.py constructTimestampList():1296 [1] parosci_nc = /data/auv_data/dorado/missionnetcdfs/2010.341.00/parosci.nc INFO 2025-06-26 17:13:43,547 lopcToNetCDF.py constructTimestampList():1297 [1] Using NetCDF4 to get start and end epoch seconds for this mission from this URL: INFO 2025-06-26 17:13:43,547 lopcToNetCDF.py constructTimestampList():1300 [1] /data/auv_data/dorado/missionnetcdfs/2010.341.00/parosci.nc INFO 2025-06-26 17:13:43,550 lopcToNetCDF.py constructTimestampList():1317 [1] From associated parosci.nc file: sensor_on_time = 1291738256.5, sensor_off_time = 1291750219.4 INFO 2025-06-26 17:13:43,550 lopcToNetCDF.py constructTimestampList():1322 [1] Duration is 11962 seconds. Expecting to read 23924 L frames from the lopc.bin file. INFO 2025-06-26 17:13:43,550 lopcToNetCDF.py constructTimestampList():1330 [1] recCount not passed in, assuming we'll have 23924 records from the lopc.bin file. INFO 2025-06-26 17:13:43,550 lopcToNetCDF.py constructTimestampList():1340 [1] Calling correctSampleCountList() with sampleCountList[0] = 1 and len(sampleCountList) = 23929 INFO 2025-06-26 17:13:43,552 lopcToNetCDF.py correctSampleCountList():1737 [1] Found overflows at indices: [] INFO 2025-06-26 17:13:43,552 lopcToNetCDF.py correctSampleCountList():1745 [1] Original sampleCountList = [ 1 2 3 ... 23927 23928 23929] INFO 2025-06-26 17:13:43,553 lopcToNetCDF.py correctSampleCountList():1746 [1] Found 0 0 values at indices: [] INFO 2025-06-26 17:13:43,553 lopcToNetCDF.py correctSampleCountList():1779 [1] Found 0 stuck values at indices: [] INFO 2025-06-26 17:13:43,553 lopcToNetCDF.py deSpike():1588 [1] d_sampleCountList = [1 1 1 ... 1 1 1] INFO 2025-06-26 17:13:43,553 lopcToNetCDF.py deSpike():1590 [1] Found 0 spike indicators at indices: [] INFO 2025-06-26 17:13:43,553 lopcToNetCDF.py correctSampleCountList():1805 [1] After despike() sampleCountList = [ 1 2 3 ... 23927 23928 23929] INFO 2025-06-26 17:13:43,553 lopcToNetCDF.py constructTimestampList():1347 [1] correctSampleCountList() returned correctedSampleCountList = [ 1 2 3 ... 23927 23928 23929] with len(correctedSampleCountList) = 23929 INFO 2025-06-26 17:13:43,553 lopcToNetCDF.py constructTimestampList():1358 [1] Subtracting 1 from all values of correctedSampleCountList INFO 2025-06-26 17:13:43,553 lopcToNetCDF.py constructTimestampList():1363 [1] Constructing timestampArray from instrument corrected sampleCount and constant deltaT = 0.500000 INFO 2025-06-26 17:13:43,553 lopcToNetCDF.py constructTimestampList():1368 [1] New re-zeroed correctedSampleCountList = [0.00000e+00 5.00000e-01 1.00000e+00 ... 1.19630e+04 1.19635e+04 1.19640e+04] INFO 2025-06-26 17:13:43,554 lopcToNetCDF.py constructTimestampList():1379 [1] timestampArray = [1.29173826e+09 1.29173826e+09 1.29173826e+09 ... 1.29175022e+09 1.29175022e+09 1.29175022e+09] INFO 2025-06-26 17:13:43,554 lopcToNetCDF.py constructTimestampList():1380 [1] timestampArray[:2] = [1291738256.5 1291738257.0, ..., timestampArray[-2:] = 1291750220.0 1291750220.5] INFO 2025-06-26 17:13:43,578 lopcToNetCDF.py constructTimestampList():1389 [1] timestampList[:2] = [np.float64(1291738256.527737), np.float64(1291738257.027737)], ..., timestampList[-2:] = [np.float64(1291750220.027737), np.float64(1291750220.527737)]] INFO 2025-06-26 17:13:43,579 lopcToNetCDF.py constructTimestampList():1394 [1] Subsampling correctedSampleCountList (len = 23929) according to what got written to the netCDF file by the binning interval INFO 2025-06-26 17:13:43,579 lopcToNetCDF.py constructTimestampList():1399 [1] lFrameCountWrittenList[:2] = [20, 41], ... lFrameCountWrittenList[-2:] = [23897, 23918] INFO 2025-06-26 17:13:43,579 lopcToNetCDF.py constructTimestampList():1420 [1] len(subSampledCorrectedSampleCountList) = 1139 INFO 2025-06-26 17:13:43,579 lopcToNetCDF.py constructTimestampList():1439 [1] len(timestampList) = 23929 INFO 2025-06-26 17:13:43,579 lopcToNetCDF.py constructTimestampList():1440 [1] timestampList[:2] = [np.float64(1291738256.527737), np.float64(1291738257.027737)], ..., timestampList[-2:] = [np.float64(1291750220.027737), np.float64(1291750220.527737)]] INFO 2025-06-26 17:13:43,579 lopcToNetCDF.py constructTimestampList():1446 [1] Subsampling timestampList (len = 23929) according to what got written to the netCDF file by the binning interval INFO 2025-06-26 17:13:43,579 lopcToNetCDF.py constructTimestampList():1457 [1] Taking indices [[np.int32(19), np.int32(40)] ... [np.int32(23896), np.int32(23917)]] from timestampList to create subSampledTimestampList INFO 2025-06-26 17:13:43,580 lopcToNetCDF.py constructTimestampList():1463 [1] len(subSampledTimestampList) = 1139 INFO 2025-06-26 17:13:43,580 lopcToNetCDF.py constructTimestampList():1477 [1] Finding elements of cFrameEsecsList that != -9999 INFO 2025-06-26 17:13:43,598 lopcToNetCDF.py closeNetCDFFile():2096 [1] Writing time axis for len(tsList) = 1139 INFO 2025-06-26 17:13:43,598 lopcToNetCDF.py closeNetCDFFile():2099 [1] tsList[:1] = [np.float64(1291738266.027737)], ..., tsList[-2:] = [np.float64(1291750204.527737), np.float64(1291750215.027737)] INFO 2025-06-26 17:13:43,598 lopcToNetCDF.py closeNetCDFFile():2100 [1] Begin time = 2010-12-07 16:11:06 Z INFO 2025-06-26 17:13:43,598 lopcToNetCDF.py closeNetCDFFile():2103 [1] End time = 2010-12-07 19:30:15 Z INFO 2025-06-26 17:13:43,598 lopcToNetCDF.py closeNetCDFFile():2107 [1] Writing time axis for len(cFrameEsecsList) = 1139 INFO 2025-06-26 17:13:43,598 lopcToNetCDF.py closeNetCDFFile():2111 [1] cFrameEsecsList[:1] = [1.29173826e+09], ..., cFrameEsecsList[-2:] = [1.29175020e+09 1.29175021e+09] INFO 2025-06-26 17:13:43,598 lopcToNetCDF.py closeNetCDFFile():2116 [1] Begin time = 2010-12-07 16:11:04 Z INFO 2025-06-26 17:13:43,598 lopcToNetCDF.py closeNetCDFFile():2120 [1] End time = 2010-12-07 19:30:13 Z INFO 2025-06-26 17:13:43,602 lopcToNetCDF.py main():2381 [1] Created file: /data/auv_data/dorado/missionnetcdfs/2010.341.00/lopc.nc INFO 2025-06-26 17:13:43,602 lopcToNetCDF.py main():2384 [1] Processing finished: Thu Jun 26 17:13:43 2025 Elapsed processing time from start of processing = 19 seconds INFO 2025-06-26 17:13:43,603 process.py calibrate():227 [1] Calibration steps for 2010.341.00 INFO 2025-06-26 17:13:43,814 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-06-26 17:13:43,815 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-06-26 17:13:45,209 calibrate.py _nudge_pos():1806 [1] 190: 0.120 0.0014768 -0.0018490 1835 6.26 34.993 -54.702 2010-12-07T16:20:16.069405440 INFO 2025-06-26 17:13:46,169 calibrate.py _nudge_pos():1806 [1] 294: 0.120 0.0046085 -0.0160687 14012 46.98 14.562 -63.379 2010-12-07T17:08:58.069234944 INFO 2025-06-26 17:13:46,859 calibrate.py _nudge_pos():1806 [1] 368: 0.120 0.0000504 -0.0000039 15 0.05 160.331 -15.676 2010-12-07T17:10:14.074028288 INFO 2025-06-26 17:13:46,924 calibrate.py _nudge_pos():1806 [1] 375: 0.130 -0.0005868 -0.0153905 14042 46.93 -1.856 -60.768 2010-12-07T17:57:16.070708224 INFO 2025-06-26 17:13:48,039 calibrate.py _nudge_pos():1806 [1] 494: 0.130 -0.0073200 -0.0112005 13966 46.63 -23.302 -44.509 2010-12-07T18:45:52.070948608 INFO 2025-06-26 17:13:49,039 calibrate.py _nudge_pos():1806 [1] 599: 0.140 0.0022264 -0.0018092 11374 37.96 8.705 -8.831 2010-12-07T19:25:34.067770624 INFO 2025-06-26 17:13:51,725 calibrate.py _nudge_pos():1862 [1] 834: - - - 1 0.00 - - INFO 2025-06-26 17:13:51,725 calibrate.py _nudge_pos():1868 [1] Points in final series = 59338 WARNING 2025-06-26 17:13:51,810 calibrate.py _depth_process():2193 [1] Expected sample_rate to be 10 Hz, instead it's 9.09 Hz INFO 2025-06-26 17:13:58,118 calibrate.py _geometric_depth_correction():3423 [1] hs2: d_beg_time_diff: 6 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 17:14:01,523 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 55 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 17:14:01,876 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 55 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 17:14:01,878 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2010.341.00/ctd1.nc INFO 2025-06-26 17:14:01,879 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd1_salinity values to NaN INFO 2025-06-26 17:14:01,879 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-06-26 17:14:01,879 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1 INFO 2025-06-26 17:14:04,499 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 28 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 17:14:04,852 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 28 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 17:14:04,854 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2010.341.00/ctd2.nc INFO 2025-06-26 17:14:04,855 calibrate.py _range_qc_combined_nc():898 [1] Setting 169 ctd2_salinity values to NaN INFO 2025-06-26 17:14:04,855 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-06-26 17:14:04,855 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2 INFO 2025-06-26 17:14:04,878 calibrate.py _biolume_process():3128 [1] Checking for non-monotonic increasing time60hz INFO 2025-06-26 17:14:05,380 calibrate.py _biolume_process():3131 [1] Removing non-monotonic increasing time60hz at indices: [ 60 61 62 ... 691997 691998 691999] INFO 2025-06-26 17:14:05,484 calibrate.py _geometric_depth_correction():3423 [1] biolume: d_beg_time_diff: -6 seconds, d_end_time_diff: -1 seconds ERROR 2025-06-26 17:14:16,798 calibrate.py process_logs():3542 [1] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2010.341.00 INFO 2025-06-26 17:14:16,867 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2010.341.00/dorado_2010.341.00_cal.nc INFO 2025-06-26 17:14:22,128 calibrate.py write_netcdf():3512 [1] Data variables written: biolume_avg_biolume, biolume_depth, biolume_flow, biolume_raw, biolume_time, biolume_time60hz, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_salinity_onboard, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_salinity_onboard, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, hs2_bbp420, hs2_bbp700, hs2_depth, hs2_fl700, hs2_time, isus_nitrate, isus_quality, isus_temp, isus_time, lopc_LCcount, lopc_countListSum, lopc_flowSpeed, lopc_nonTransCount, lopc_time, lopc_transCount, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, tailcone_propRpm, tailcone_time, time INFO 2025-06-26 17:14:22,135 process.py align():251 [1] Alignment steps for 2010.341.00 INFO 2025-06-26 17:14:22,172 align.py process_cal():139 [1] Processing dorado_2010.341.00_cal.nc from /data/auv_data/dorado/missionnetcdfs/2010.341.00 INFO 2025-06-26 17:14:22,192 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 17:14:22,195 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 4.98 INFO 2025-06-26 17:14:22,239 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 17:14:22,243 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 4.98 INFO 2025-06-26 17:14:22,287 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 17:14:22,291 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 4.98 INFO 2025-06-26 17:14:22,318 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-06-26 17:14:22,319 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-06-26 17:14:22,336 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 17:14:22,339 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 4.98 INFO 2025-06-26 17:14:22,385 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2010.341.00_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:14:22,388 align.py process_cal():249 [1] hs2_bbp420: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 17:14:22,427 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2010.341.00_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:14:22,431 align.py process_cal():249 [1] hs2_bbp700: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 17:14:22,472 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2010.341.00_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:14:22,475 align.py process_cal():249 [1] hs2_fl700: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 17:14:22,513 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.341.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:14:22,517 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 17:14:22,558 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.341.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:14:22,562 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 17:14:22,601 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.341.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:14:22,604 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 17:14:22,644 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.341.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:14:22,647 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 17:14:22,686 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.341.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:14:22,690 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 17:14:22,730 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.341.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:14:22,733 align.py process_cal():249 [1] ctd1_salinity_onboard: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 17:14:22,772 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.341.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:14:22,776 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 17:14:22,816 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.341.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:14:22,819 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 17:14:22,858 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.341.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:14:22,862 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 17:14:22,903 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.341.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:14:22,906 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 17:14:22,944 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.341.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:14:22,948 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 17:14:22,988 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.341.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:14:22,991 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 17:14:23,032 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.341.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:14:23,035 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 17:14:23,077 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.341.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:14:23,080 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 17:14:23,119 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.341.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:14:23,123 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 17:14:23,162 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.341.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:14:23,166 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 17:14:23,205 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.341.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:14:23,209 align.py process_cal():249 [1] ctd2_salinity_onboard: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 17:14:23,250 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.341.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:14:23,254 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 17:14:23,294 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.341.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:14:23,297 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 17:14:23,348 align.py process_cal():249 [1] isus_nitrate: instrument_sample_rate_hz = 0.78 INFO 2025-06-26 17:14:23,385 align.py process_cal():249 [1] isus_temp: instrument_sample_rate_hz = 0.78 INFO 2025-06-26 17:14:23,422 align.py process_cal():249 [1] isus_quality: instrument_sample_rate_hz = 0.78 INFO 2025-06-26 17:14:23,460 align.py process_cal():249 [1] biolume_flow: instrument_sample_rate_hz = 0.98 INFO 2025-06-26 17:14:23,500 align.py process_cal():249 [1] biolume_avg_biolume: instrument_sample_rate_hz = 0.98 INFO 2025-06-26 17:14:23,560 align.py process_cal():249 [1] biolume_raw: instrument_sample_rate_hz = 58.86 INFO 2025-06-26 17:14:23,887 align.py process_cal():249 [1] lopc_countListSum: instrument_sample_rate_hz = 0.10 INFO 2025-06-26 17:14:23,924 align.py process_cal():249 [1] lopc_transCount: instrument_sample_rate_hz = 0.10 INFO 2025-06-26 17:14:23,959 align.py process_cal():249 [1] lopc_nonTransCount: instrument_sample_rate_hz = 0.10 INFO 2025-06-26 17:14:23,994 align.py process_cal():249 [1] lopc_LCcount: instrument_sample_rate_hz = 0.10 INFO 2025-06-26 17:14:24,032 align.py process_cal():249 [1] lopc_flowSpeed: instrument_sample_rate_hz = 0.10 INFO 2025-06-26 17:14:24,070 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 4.97 INFO 2025-06-26 17:14:24,104 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2010.341.00/dorado_2010.341.00_align.nc INFO 2025-06-26 17:14:24,221 align.py write_netcdf():342 [1] Data variables written: biolume_avg_biolume, biolume_depth, biolume_flow, biolume_latitude, biolume_longitude, biolume_raw, biolume_time, biolume_time60hz, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_salinity_onboard, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_salinity_onboard, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, hs2_bbp420, hs2_bbp700, hs2_depth, hs2_fl700, hs2_latitude, hs2_longitude, hs2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, lopc_LCcount, lopc_countListSum, lopc_depth, lopc_flowSpeed, lopc_latitude, lopc_longitude, lopc_nonTransCount, lopc_time, lopc_transCount, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-06-26 17:14:24,225 process.py resample():273 [1] Resampling steps for 2010.341.00 INFO 2025-06-26 17:14:24,226 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-06-26 17:14:24,262 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2010.341.00/dorado_2010.341.00_align.nc mission netCDF file INFO 2025-06-26 17:14:24,268 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2010.341.00/dorado_2010.341.00_align.nc mission netCDF file INFO 2025-06-26 17:14:24,270 resample.py get_mission_start_end():1145 [1] navigation: 2010-12-07T16:11:42.484588544 to 2010-12-07T19:30:19.268232960 (0 days 00:00:00.039997440 before mission_end) INFO 2025-06-26 17:14:24,271 resample.py get_mission_start_end():1145 [1] hs2 : 2010-12-07T16:11:03.047290368 to 2010-12-07T19:30:19.268232960 (0 days 00:00:00.039997440 before mission_end) INFO 2025-06-26 17:14:24,273 resample.py get_mission_start_end():1145 [1] ctd1 : 2010-12-07T16:11:51.783951616 to 2010-12-07T19:30:19.278232320 (0 days 00:00:00.029998080 before mission_end) INFO 2025-06-26 17:14:24,274 resample.py get_mission_start_end():1145 [1] ctd2 : 2010-12-07T16:11:25.075781120 to 2010-12-07T19:30:19.308230400 (0 days 00:00:00 before mission_end) INFO 2025-06-26 17:14:24,276 resample.py get_mission_start_end():1145 [1] isus : 2010-12-07T16:12:15.302340608 to 2010-12-07T19:30:19.118243328 (0 days 00:00:00.189987072 before mission_end) INFO 2025-06-26 17:14:24,277 resample.py get_mission_start_end():1145 [1] biolume : 2010-12-07T16:10:50.748098560 to 2010-12-07T19:30:18.508250880 (0 days 00:00:00.799979520 before mission_end) INFO 2025-06-26 17:14:24,279 resample.py get_mission_start_end():1145 [1] lopc : 2010-12-07T16:11:06.027736832 to 2010-12-07T19:30:15.027736832 (0 days 00:00:04.280493568 before mission_end) INFO 2025-06-26 17:14:24,280 resample.py get_mission_start_end():1145 [1] tailcone : 2010-12-07T16:10:56.517737728 to 2010-12-07T19:30:19.198237952 (0 days 00:00:00.109992448 before mission_end) INFO 2025-06-26 17:14:24,281 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2010.341.00/dorado_2010.341.00_align.nc mission netCDF file INFO 2025-06-26 17:14:24,281 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-06-26 17:14:24,425 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-06-26 17:14:24,452 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-06-26 17:14:24,478 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-06-26 17:14:24,503 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 17:14:24,527 resample.py resample_variable():1031 [1] Resampling hs2_bbp420 with frequency 1S following 3 point median filter INFO 2025-06-26 17:14:24,550 resample.py resample_variable():1031 [1] Resampling hs2_bbp700 with frequency 1S following 3 point median filter INFO 2025-06-26 17:14:24,574 resample.py resample_variable():1031 [1] Resampling hs2_fl700 with frequency 1S following 3 point median filter INFO 2025-06-26 17:14:24,597 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 17:14:24,619 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 17:14:24,639 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 17:14:24,660 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 17:14:24,681 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 17:14:24,702 resample.py resample_variable():1031 [1] Resampling ctd1_salinity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 17:14:24,724 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-06-26 17:14:24,745 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-06-26 17:14:24,767 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-06-26 17:14:24,788 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-06-26 17:14:24,812 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 17:14:24,836 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 17:14:24,862 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 17:14:24,886 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 17:14:24,909 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 17:14:24,931 resample.py resample_variable():1031 [1] Resampling ctd2_salinity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 17:14:24,954 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-06-26 17:14:24,968 resample.py resample_variable():1031 [1] Resampling isus_nitrate with frequency 1S following 3 point median filter INFO 2025-06-26 17:14:24,980 resample.py resample_variable():1031 [1] Resampling isus_temp with frequency 1S following 3 point median filter INFO 2025-06-26 17:14:24,991 resample.py resample_variable():1031 [1] Resampling isus_quality with frequency 1S following 3 point median filter INFO 2025-06-26 17:14:25,003 resample.py resample_variable():1031 [1] Resampling biolume_flow with frequency 1S following 3 point median filter INFO 2025-06-26 17:14:25,016 resample.py resample_variable():1031 [1] Resampling biolume_avg_biolume with frequency 1S following 3 point median filter INFO 2025-06-26 17:14:25,020 resample.py set_proxy_parameters():520 [1] Setting biolume proxy parameters for period4 INFO 2025-06-26 17:14:25,020 resample.py add_biolume_proxies():549 [1] Adding biolume proxy variables computed from biolume_raw INFO 2025-06-26 17:14:25,432 resample.py add_biolume_proxies():595 [1] Using flash_threshold = 1.0000e+11 INFO 2025-06-26 17:14:25,509 resample.py add_biolume_proxies():638 [1] Computing flashes per liter: nbflash_high, nbflash_low INFO 2025-06-26 17:14:25,553 resample.py add_biolume_proxies():666 [1] Saving flash intensity: biolume_intflash - the upper bound of the background envelope INFO 2025-06-26 17:14:25,573 resample.py add_biolume_proxies():683 [1] Saving Background bioluminescence (dinoflagellates proxy) INFO 2025-06-26 17:14:25,591 resample.py select_nighttime_bl_raw():432 [1] No sunset or sunrise found during this mission. INFO 2025-06-26 17:14:25,591 resample.py add_biolume_proxies():694 [1] No nighttime_bl_raw data to compute adinos, diatoms, hdinos proxies INFO 2025-06-26 17:14:25,607 resample.py resample_variable():1031 [1] Resampling lopc_countListSum with frequency 1S following 3 point median filter INFO 2025-06-26 17:14:25,617 resample.py resample_variable():1031 [1] Resampling lopc_transCount with frequency 1S following 3 point median filter INFO 2025-06-26 17:14:25,626 resample.py resample_variable():1031 [1] Resampling lopc_nonTransCount with frequency 1S following 3 point median filter INFO 2025-06-26 17:14:25,635 resample.py resample_variable():1031 [1] Resampling lopc_LCcount with frequency 1S following 3 point median filter INFO 2025-06-26 17:14:25,645 resample.py resample_variable():1031 [1] Resampling lopc_flowSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 17:14:25,669 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-06-26 17:14:25,865 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2010.341.00/dorado_2010.341.00_1S.nc INFO 2025-06-26 17:14:27,584 create_products.py _get_best_ctd():380 [1] ctdToUse = ctd1 INFO 2025-06-26 17:14:34,603 create_products.py gulper_odv():522 [1] Wrote 6 Gulper data lines to /data/auv_data/dorado/missionodvs/2010.341.00/dorado_2010.341.00_1S_Gulper.txt INFO 2025-06-26 17:14:34,603 process.py archive():337 [1] Archiving steps for 2010.341.00 INFO 2025-06-26 17:14:34,603 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2010.341.00/dorado_2010.341.00, BASE_PATH = /data/auv_data INFO 2025-06-26 17:14:34,605 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2010.341.00/dorado_2010.341.00 files to /Volumes/AUVCTD/surveys/2010/netcdf INFO 2025-06-26 17:14:34,605 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2010/netcdf/dorado_2010.341.00_1S.nc INFO 2025-06-26 17:14:34,621 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.341.00/dorado_2010.341.00_1S.nc /Volumes/AUVCTD/surveys/2010/netcdf done. INFO 2025-06-26 17:14:34,623 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2010/netcdf/dorado_2010.341.00_cal.nc INFO 2025-06-26 17:14:34,701 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.341.00/dorado_2010.341.00_cal.nc /Volumes/AUVCTD/surveys/2010/netcdf done. INFO 2025-06-26 17:14:34,702 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2010/netcdf/dorado_2010.341.00_align.nc INFO 2025-06-26 17:14:34,827 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.341.00/dorado_2010.341.00_align.nc /Volumes/AUVCTD/surveys/2010/netcdf done. INFO 2025-06-26 17:14:34,845 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.341.00/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010341/2010.341.00 done. INFO 2025-06-26 17:14:34,862 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.341.00/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010341/2010.341.00 done. INFO 2025-06-26 17:14:34,867 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.341.00/gps.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010341/2010.341.00 done. INFO 2025-06-26 17:14:34,882 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.341.00/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010341/2010.341.00 done. INFO 2025-06-26 17:14:34,918 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.341.00/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010341/2010.341.00 done. INFO 2025-06-26 17:14:34,924 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.341.00/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010341/2010.341.00 done. INFO 2025-06-26 17:14:34,942 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.341.00/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010341/2010.341.00 done. INFO 2025-06-26 17:14:34,957 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.341.00/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010341/2010.341.00 done. INFO 2025-06-26 17:14:34,991 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.341.00/biolume.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010341/2010.341.00 done. INFO 2025-06-26 17:14:35,028 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.341.00/lopc.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010341/2010.341.00 done. INFO 2025-06-26 17:14:35,028 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-06-26 17:14:35,030 archive.py copy_to_AUVTCD():133 [1] Removing /Volumes/AUVCTD/surveys/2010/odv/dorado_2010.341.00_1S_Gulper.txt INFO 2025-06-26 17:14:35,035 archive.py copy_to_AUVTCD():136 [1] copyfile /data/auv_data/dorado/missionodvs/2010.341.00/dorado_2010.341.00_1S_Gulper.txt /Volumes/AUVCTD/surveys/2010/odv done. INFO 2025-06-26 17:14:35,035 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.341.00/dorado_2010.341.00_processing.log /Volumes/AUVCTD/surveys/2010/netcdf