INFO 2025-06-26 17:12:25,085 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2005 --end_year 2014 --num_cores 1 -v --noinput --clobber INFO 2025-06-26 17:12:25,085 process.py process_mission():434 [1] dorado_info[mission]["comment"] = Out and back from M1 - ctdToUse = ctd1 INFO 2025-06-26 17:12:25,086 process.py process_mission():449 [1] Processing AUVCTD mission 2010.340.01 by user docker_user on host eae60d30a712 INFO 2025-06-26 17:12:25,086 process.py download_process():165 [1] Download and processing steps for 2010.340.01 INFO 2025-06-26 17:12:25,086 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2010/2010340/2010.340.01 INFO 2025-06-26 17:12:25,086 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2010/2010340/2010.340.01 to /data/auv_data/dorado/missionlogs/2010.340.01 INFO 2025-06-26 17:12:28,001 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2010.340.01 INFO 2025-06-26 17:12:28,001 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.340.01/ctdDriver.log (4172747 bytes) INFO 2025-06-26 17:12:28,282 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/dorado/missionlogs/2010.340.01/ctdDriver.log: [ 79 379 537 821 846 1044 1209 1694 1880 2314 2357 2376 2626 3069 3494 4662 4889 5659 7045 7307 7830 9785 10586 10625 10899 13432 15974 16284 20079 20746 21316 24025 25375 30314 33032 34841 35089 35844 38575 40484 43168 43354] INFO 2025-06-26 17:12:28,293 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.340.01/ctdDriver2.log (4171199 bytes) INFO 2025-06-26 17:12:28,587 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/dorado/missionlogs/2010.340.01/ctdDriver2.log: [ 76 277 366 525 741 809 834 1032 1082 1197 1680 1866 2032 2302 2344 2363 2612 3056 3482 4651 5297 5648 5786 6881 7035 7297 10576 10615 10889 13423 15965 16275 20070 21305 24015 26229 30303 35075 35829 38560 40469] INFO 2025-06-26 17:12:28,604 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.340.01/gps.log (31676 bytes) INFO 2025-06-26 17:12:28,615 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.340.01/hydroscatlog.log (3663346 bytes) INFO 2025-06-26 17:12:28,984 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/dorado/missionlogs/2010.340.01/hydroscatlog.log: [ 2 70 86 423 466 591 614 713 783 784 796 848 860 918 921 1076 1077 1143 1339 1479 1619 1620 1622 1703 1799 2152 2154 2167 2296 2343 2487 2509 2514 2739 2958 3179 3183 3197 3448 3632 3885 4712 4727 4780 5299 5426 5427 5779 5812 5917 7014 7029 7123 7169 7954 8114 9910 10453 10466 10714 10753 10950 11938 13903 14814 15632 16030 16110 16129 17091 17914 19257 20216 20882 22144 23374 24078 24206 26380 27077 27723 28338 29862 30454 31248 31982 32429 33171 35231 36591 36592 36952 38280 38716 40625 43494] INFO 2025-06-26 17:12:28,996 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.340.01/navigation.log (12762298 bytes) INFO 2025-06-26 17:12:29,927 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.340.01/isuslog.log (269973 bytes) INFO 2025-06-26 17:12:29,957 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.340.01/parosci.log (4759718 bytes) INFO 2025-06-26 17:12:30,362 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.340.01/tailCone.log (2601739 bytes) INFO 2025-06-26 17:12:30,681 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.340.01/biolume.log (3051718 bytes) INFO 2025-06-26 17:12:30,976 logs2netcdfs.py write_variables():575 [1] Expanding original timeTag to time60Hz variable for raw data INFO 2025-06-26 17:12:31,140 logs2netcdfs.py download_process_logs():807 [1] Time to process: 3.14 seconds INFO 2025-06-26 17:12:31,140 process.py download_process():198 [1] Processing file /data/auv_data/dorado/missionlogs/2010.340.01/lopc.bin (16192000 bytes) INFO 2025-06-26 17:12:31,141 lopcToNetCDF.py main():2297 [1] Processing begun: Thu Jun 26 17:12:31 2025 INFO 2025-06-26 17:12:31,141 lopcToNetCDF.py constructTimestampList():1296 [1] parosci_nc = /data/auv_data/dorado/missionnetcdfs/2010.340.01/parosci.nc INFO 2025-06-26 17:12:31,141 lopcToNetCDF.py constructTimestampList():1297 [1] Using NetCDF4 to get start and end epoch seconds for this mission from this URL: INFO 2025-06-26 17:12:31,141 lopcToNetCDF.py constructTimestampList():1300 [1] /data/auv_data/dorado/missionnetcdfs/2010.340.01/parosci.nc INFO 2025-06-26 17:12:31,144 lopcToNetCDF.py constructTimestampList():1317 [1] From associated parosci.nc file: sensor_on_time = 1291666444.1, sensor_off_time = 1291677355.4 INFO 2025-06-26 17:12:31,144 lopcToNetCDF.py constructTimestampList():1322 [1] Duration is 10911 seconds. Expecting to read 21822 L frames from the lopc.bin file. INFO 2025-06-26 17:12:31,144 lopcToNetCDF.py constructTimestampList():1330 [1] recCount not passed in, assuming we'll have 21822 records from the lopc.bin file. INFO 2025-06-26 17:12:31,281 lopcToNetCDF.py main():2321 [1] Examined sibling parosci.nc file to find startTime = 2010-12-06 20:14:04 Z and endTime = 2010-12-06 23:15:55 Z with 21822 records expected to be read from lopc.bin INFO 2025-06-26 17:12:31,281 lopcToNetCDF.py unpackLOPCbin():723 [1] >>> Unpacking LOPC data from /data/auv_data/dorado/missionlogs/2010.340.01/lopc.bin INFO 2025-06-26 17:12:31,281 lopcToNetCDF.py unpackLOPCbin():724 [1] >>> Will write to NetCDF file /data/auv_data/dorado/missionnetcdfs/2010.340.01/lopc.nc INFO 2025-06-26 17:12:31,282 lopcToNetCDF.py openNetCDFFile():1861 [1] Will output NetCDF file to /data/auv_data/dorado/missionnetcdfs/2010.340.01/lopc.nc INFO 2025-06-26 17:12:31,282 lopcToNetCDF.py openNetCDFFile():1887 [1] missionName = 2010.340.01 INFO 2025-06-26 17:12:31,283 lopcToNetCDF.py openNetCDFFile():1910 [1] Writing bin axis for len(self.dataStructure['binSizeList']) = 994 WARNING 2025-06-26 17:12:31,286 lopcToNetCDF.py readCframeData():665 [1] Unable to parse a float from the string cstr[:70] = A0152563 WARNING 2025-06-26 17:12:31,286 lopcToNetCDF.py readCframeData():665 [1] Unable to parse a float from the string cstr[:70] = INFO 2025-06-26 17:12:31,364 lopcToNetCDF.py unpackLOPCbin():951 [1] L Frames sample M Frames ShortLFrame LBeforeMEnd MBeforeLEnd UnknownFrame Garbled L INFO 2025-06-26 17:12:31,364 lopcToNetCDF.py unpackLOPCbin():969 [1] Count Count Count Error Error Error Error Error INFO 2025-06-26 17:12:31,364 lopcToNetCDF.py unpackLOPCbin():987 [1] -------- -------- -------- ----------- ----------- ----------- ----------- ------------ ERROR 2025-06-26 17:12:36,731 lopcToNetCDF.py main():2340 [1] UnicodeDecodeError: 'utf-8' codec can't decode byte 0x84 in position 0: invalid start byte INFO 2025-06-26 17:12:36,731 lopcToNetCDF.py main():2341 [1] Failed to decode all of lopc.bin - resulting lopc.nc file likely incomplete INFO 2025-06-26 17:12:36,731 lopcToNetCDF.py constructTimestampList():1296 [1] parosci_nc = /data/auv_data/dorado/missionnetcdfs/2010.340.01/parosci.nc INFO 2025-06-26 17:12:36,731 lopcToNetCDF.py constructTimestampList():1297 [1] Using NetCDF4 to get start and end epoch seconds for this mission from this URL: INFO 2025-06-26 17:12:36,731 lopcToNetCDF.py constructTimestampList():1300 [1] /data/auv_data/dorado/missionnetcdfs/2010.340.01/parosci.nc INFO 2025-06-26 17:12:36,735 lopcToNetCDF.py constructTimestampList():1317 [1] From associated parosci.nc file: sensor_on_time = 1291666444.1, sensor_off_time = 1291677355.4 INFO 2025-06-26 17:12:36,735 lopcToNetCDF.py constructTimestampList():1322 [1] Duration is 10911 seconds. Expecting to read 21822 L frames from the lopc.bin file. INFO 2025-06-26 17:12:36,735 lopcToNetCDF.py constructTimestampList():1330 [1] recCount not passed in, assuming we'll have 21822 records from the lopc.bin file. INFO 2025-06-26 17:12:36,735 lopcToNetCDF.py constructTimestampList():1340 [1] Calling correctSampleCountList() with sampleCountList[0] = 21448 and len(sampleCountList) = 6370 INFO 2025-06-26 17:12:36,736 lopcToNetCDF.py correctSampleCountList():1737 [1] Found overflows at indices: [] INFO 2025-06-26 17:12:36,736 lopcToNetCDF.py correctSampleCountList():1745 [1] Original sampleCountList = [21448 21449 21450 ... 28278 28279 28280] INFO 2025-06-26 17:12:36,736 lopcToNetCDF.py correctSampleCountList():1746 [1] Found 0 0 values at indices: [] INFO 2025-06-26 17:12:36,736 lopcToNetCDF.py correctSampleCountList():1779 [1] Found 0 stuck values at indices: [] INFO 2025-06-26 17:12:36,736 lopcToNetCDF.py deSpike():1588 [1] d_sampleCountList = [ 1 1 464 ... 1 1 1] INFO 2025-06-26 17:12:36,736 lopcToNetCDF.py deSpike():1590 [1] Found 1 spike indicators at indices: [3] INFO 2025-06-26 17:12:36,737 lopcToNetCDF.py deSpike():1595 [1] Identifying nature of spike value = 21914 at index = 3 INFO 2025-06-26 17:12:36,737 lopcToNetCDF.py deSpike():1714 [1] This is the last element in spike_indx. No need to deSpike(). INFO 2025-06-26 17:12:36,737 lopcToNetCDF.py correctSampleCountList():1805 [1] After despike() sampleCountList = [21448 21449 21450 ... 28278 28279 28280] INFO 2025-06-26 17:12:36,737 lopcToNetCDF.py constructTimestampList():1347 [1] correctSampleCountList() returned correctedSampleCountList = [21448 21449 21450 ... 28278 28279 28280] with len(correctedSampleCountList) = 6370 INFO 2025-06-26 17:12:36,737 lopcToNetCDF.py constructTimestampList():1358 [1] Subtracting 21448 from all values of correctedSampleCountList INFO 2025-06-26 17:12:36,737 lopcToNetCDF.py constructTimestampList():1363 [1] Constructing timestampArray from instrument corrected sampleCount and constant deltaT = 0.500000 INFO 2025-06-26 17:12:36,737 lopcToNetCDF.py constructTimestampList():1368 [1] New re-zeroed correctedSampleCountList = [0.0000e+00 5.0000e-01 1.0000e+00 ... 3.4150e+03 3.4155e+03 3.4160e+03] INFO 2025-06-26 17:12:36,738 lopcToNetCDF.py constructTimestampList():1379 [1] timestampArray = [1.29166644e+09 1.29166644e+09 1.29166645e+09 ... 1.29166986e+09 1.29166986e+09 1.29166986e+09] INFO 2025-06-26 17:12:36,738 lopcToNetCDF.py constructTimestampList():1380 [1] timestampArray[:2] = [1291666444.1 1291666444.6, ..., timestampArray[-2:] = 1291669859.6 1291669860.1] INFO 2025-06-26 17:12:36,744 lopcToNetCDF.py constructTimestampList():1389 [1] timestampList[:2] = [np.float64(1291666444.1047347), np.float64(1291666444.6047347)], ..., timestampList[-2:] = [np.float64(1291669859.6047347), np.float64(1291669860.1047347)]] INFO 2025-06-26 17:12:36,744 lopcToNetCDF.py constructTimestampList():1394 [1] Subsampling correctedSampleCountList (len = 6370) according to what got written to the netCDF file by the binning interval INFO 2025-06-26 17:12:36,744 lopcToNetCDF.py constructTimestampList():1399 [1] lFrameCountWrittenList[:2] = [20, 41], ... lFrameCountWrittenList[-2:] = [6341, 6362] INFO 2025-06-26 17:12:36,745 lopcToNetCDF.py constructTimestampList():1420 [1] len(subSampledCorrectedSampleCountList) = 303 INFO 2025-06-26 17:12:36,745 lopcToNetCDF.py constructTimestampList():1439 [1] len(timestampList) = 6370 INFO 2025-06-26 17:12:36,745 lopcToNetCDF.py constructTimestampList():1440 [1] timestampList[:2] = [np.float64(1291666444.1047347), np.float64(1291666444.6047347)], ..., timestampList[-2:] = [np.float64(1291669859.6047347), np.float64(1291669860.1047347)]] INFO 2025-06-26 17:12:36,745 lopcToNetCDF.py constructTimestampList():1446 [1] Subsampling timestampList (len = 6370) according to what got written to the netCDF file by the binning interval INFO 2025-06-26 17:12:36,745 lopcToNetCDF.py constructTimestampList():1457 [1] Taking indices [[np.int32(19), np.int32(40)] ... [np.int32(6340), np.int32(6361)]] from timestampList to create subSampledTimestampList INFO 2025-06-26 17:12:36,745 lopcToNetCDF.py constructTimestampList():1463 [1] len(subSampledTimestampList) = 303 INFO 2025-06-26 17:12:36,745 lopcToNetCDF.py constructTimestampList():1477 [1] Finding elements of cFrameEsecsList that != -9999 INFO 2025-06-26 17:12:36,751 lopcToNetCDF.py closeNetCDFFile():2096 [1] Writing time axis for len(tsList) = 303 INFO 2025-06-26 17:12:36,751 lopcToNetCDF.py closeNetCDFFile():2099 [1] tsList[:1] = [np.float64(1291666685.1047347)], ..., tsList[-2:] = [np.float64(1291669845.6047347), np.float64(1291669856.1047347)] INFO 2025-06-26 17:12:36,752 lopcToNetCDF.py closeNetCDFFile():2100 [1] Begin time = 2010-12-06 20:18:05 Z INFO 2025-06-26 17:12:36,752 lopcToNetCDF.py closeNetCDFFile():2103 [1] End time = 2010-12-06 21:10:56 Z INFO 2025-06-26 17:12:36,752 lopcToNetCDF.py closeNetCDFFile():2107 [1] Writing time axis for len(cFrameEsecsList) = 303 INFO 2025-06-26 17:12:36,752 lopcToNetCDF.py closeNetCDFFile():2111 [1] cFrameEsecsList[:1] = [1.29166962e+09], ..., cFrameEsecsList[-2:] = [1.29166962e+09 1.29166962e+09] INFO 2025-06-26 17:12:36,752 lopcToNetCDF.py closeNetCDFFile():2116 [1] Begin time = 2010-12-06 21:07:02 Z INFO 2025-06-26 17:12:36,752 lopcToNetCDF.py closeNetCDFFile():2120 [1] End time = 2010-12-06 21:07:02 Z INFO 2025-06-26 17:12:36,756 lopcToNetCDF.py main():2381 [1] Created file: /data/auv_data/dorado/missionnetcdfs/2010.340.01/lopc.nc INFO 2025-06-26 17:12:36,756 lopcToNetCDF.py main():2384 [1] Processing finished: Thu Jun 26 17:12:36 2025 Elapsed processing time from start of processing = 5 seconds INFO 2025-06-26 17:12:36,756 process.py calibrate():227 [1] Calibration steps for 2010.340.01 INFO 2025-06-26 17:12:36,890 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-06-26 17:12:36,892 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-06-26 17:12:37,546 calibrate.py _nudge_pos():1806 [1] 111: 0.130 -0.0002842 0.0000148 1147 3.96 -10.643 0.693 2010-12-06T20:19:46.861254144 INFO 2025-06-26 17:12:38,058 calibrate.py _nudge_pos():1806 [1] 167: 0.150 -0.0048718 -0.0158365 13923 46.78 -15.460 -62.730 2010-12-06T21:07:28.855194112 INFO 2025-06-26 17:12:38,475 calibrate.py _nudge_pos():1806 [1] 212: 0.140 0.0000412 -0.0000107 75 0.25 24.750 -8.066 2010-12-06T21:08:27.861152000 INFO 2025-06-26 17:12:38,616 calibrate.py _nudge_pos():1806 [1] 227: 0.150 -0.0000949 -0.0134520 12832 42.88 -0.329 -58.131 2010-12-06T21:51:34.853931008 INFO 2025-06-26 17:12:39,504 calibrate.py _nudge_pos():1806 [1] 323: 0.150 0.0032151 -0.0086912 14639 48.91 9.758 -32.925 2010-12-06T22:42:04.856361472 INFO 2025-06-26 17:12:40,125 calibrate.py _nudge_pos():1806 [1] 389: 0.150 0.0023841 0.0000601 9619 32.11 11.019 0.347 2010-12-06T23:15:16.859899904 INFO 2025-06-26 17:12:40,485 calibrate.py _nudge_pos():1862 [1] 377: - - - 2 0.00 - - INFO 2025-06-26 17:12:40,485 calibrate.py _nudge_pos():1868 [1] Points in final series = 54067 WARNING 2025-06-26 17:12:40,640 calibrate.py _depth_process():2193 [1] Expected sample_rate to be 10 Hz, instead it's 9.09 Hz INFO 2025-06-26 17:12:46,348 calibrate.py _geometric_depth_correction():3423 [1] hs2: d_beg_time_diff: 7 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 17:12:49,396 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 26 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 17:12:49,720 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 26 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 17:12:49,722 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2010.340.01/ctd1.nc INFO 2025-06-26 17:12:49,723 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd1_salinity values to NaN INFO 2025-06-26 17:12:49,723 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-06-26 17:12:49,723 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1 INFO 2025-06-26 17:12:52,087 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 26 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 17:12:52,411 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 26 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 17:12:52,413 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2010.340.01/ctd2.nc INFO 2025-06-26 17:12:52,414 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd2_salinity values to NaN INFO 2025-06-26 17:12:52,415 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-06-26 17:12:52,415 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2 INFO 2025-06-26 17:12:52,436 calibrate.py _biolume_process():3128 [1] Checking for non-monotonic increasing time60hz INFO 2025-06-26 17:12:52,891 calibrate.py _biolume_process():3131 [1] Removing non-monotonic increasing time60hz at indices: [ 60 61 62 ... 642569 642570 642571] INFO 2025-06-26 17:12:52,986 calibrate.py _geometric_depth_correction():3423 [1] biolume: d_beg_time_diff: -4 seconds, d_end_time_diff: -1 seconds ERROR 2025-06-26 17:13:02,802 calibrate.py process_logs():3542 [1] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2010.340.01 INFO 2025-06-26 17:13:02,848 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2010.340.01/dorado_2010.340.01_cal.nc INFO 2025-06-26 17:13:07,588 calibrate.py write_netcdf():3512 [1] Data variables written: biolume_avg_biolume, biolume_depth, biolume_flow, biolume_raw, biolume_time, biolume_time60hz, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_salinity_onboard, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_salinity_onboard, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, hs2_bbp420, hs2_bbp700, hs2_depth, hs2_fl700, hs2_time, isus_nitrate, isus_quality, isus_temp, isus_time, lopc_LCcount, lopc_countListSum, lopc_flowSpeed, lopc_nonTransCount, lopc_time, lopc_transCount, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, tailcone_propRpm, tailcone_time, time INFO 2025-06-26 17:13:07,594 process.py align():251 [1] Alignment steps for 2010.340.01 INFO 2025-06-26 17:13:07,628 align.py process_cal():139 [1] Processing dorado_2010.340.01_cal.nc from /data/auv_data/dorado/missionnetcdfs/2010.340.01 INFO 2025-06-26 17:13:07,647 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 17:13:07,650 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 4.98 INFO 2025-06-26 17:13:07,691 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 17:13:07,694 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 4.98 INFO 2025-06-26 17:13:07,737 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 17:13:07,741 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 4.98 INFO 2025-06-26 17:13:07,765 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-06-26 17:13:07,765 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-06-26 17:13:07,781 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 17:13:07,785 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 4.98 INFO 2025-06-26 17:13:07,826 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2010.340.01_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:13:07,830 align.py process_cal():249 [1] hs2_bbp420: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 17:13:07,865 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2010.340.01_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:13:07,869 align.py process_cal():249 [1] hs2_bbp700: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 17:13:07,906 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2010.340.01_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:13:07,909 align.py process_cal():249 [1] hs2_fl700: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 17:13:07,946 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.340.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:13:07,950 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 17:13:07,989 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.340.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:13:07,992 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 17:13:08,030 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.340.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:13:08,033 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 17:13:08,071 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.340.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:13:08,074 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 17:13:08,110 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.340.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:13:08,114 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 17:13:08,151 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.340.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:13:08,154 align.py process_cal():249 [1] ctd1_salinity_onboard: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 17:13:08,191 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.340.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:13:08,195 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 17:13:08,232 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.340.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:13:08,236 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 17:13:08,272 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.340.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:13:08,275 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 17:13:08,311 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.340.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:13:08,315 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 17:13:08,351 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.340.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:13:08,354 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 17:13:08,393 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.340.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:13:08,396 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 17:13:08,433 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.340.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:13:08,436 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 17:13:08,474 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.340.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:13:08,478 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 17:13:08,515 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.340.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:13:08,519 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 17:13:08,558 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.340.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:13:08,562 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 17:13:08,599 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.340.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:13:08,602 align.py process_cal():249 [1] ctd2_salinity_onboard: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 17:13:08,640 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.340.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:13:08,643 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 17:13:08,680 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.340.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:13:08,683 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 17:13:08,729 align.py process_cal():249 [1] isus_nitrate: instrument_sample_rate_hz = 0.78 INFO 2025-06-26 17:13:08,762 align.py process_cal():249 [1] isus_temp: instrument_sample_rate_hz = 0.78 INFO 2025-06-26 17:13:08,797 align.py process_cal():249 [1] isus_quality: instrument_sample_rate_hz = 0.78 INFO 2025-06-26 17:13:08,835 align.py process_cal():249 [1] biolume_flow: instrument_sample_rate_hz = 0.98 INFO 2025-06-26 17:13:08,872 align.py process_cal():249 [1] biolume_avg_biolume: instrument_sample_rate_hz = 0.98 INFO 2025-06-26 17:13:08,920 align.py process_cal():249 [1] biolume_raw: instrument_sample_rate_hz = 58.86 INFO 2025-06-26 17:13:09,200 align.py process_cal():249 [1] lopc_countListSum: instrument_sample_rate_hz = 0.10 INFO 2025-06-26 17:13:09,233 align.py process_cal():249 [1] lopc_transCount: instrument_sample_rate_hz = 0.10 INFO 2025-06-26 17:13:09,263 align.py process_cal():249 [1] lopc_nonTransCount: instrument_sample_rate_hz = 0.10 INFO 2025-06-26 17:13:09,294 align.py process_cal():249 [1] lopc_LCcount: instrument_sample_rate_hz = 0.10 INFO 2025-06-26 17:13:09,325 align.py process_cal():249 [1] lopc_flowSpeed: instrument_sample_rate_hz = 0.10 INFO 2025-06-26 17:13:09,358 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 4.97 INFO 2025-06-26 17:13:09,391 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2010.340.01/dorado_2010.340.01_align.nc INFO 2025-06-26 17:13:09,503 align.py write_netcdf():342 [1] Data variables written: biolume_avg_biolume, biolume_depth, biolume_flow, biolume_latitude, biolume_longitude, biolume_raw, biolume_time, biolume_time60hz, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_salinity_onboard, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_salinity_onboard, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, hs2_bbp420, hs2_bbp700, hs2_depth, hs2_fl700, hs2_latitude, hs2_longitude, hs2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, lopc_LCcount, lopc_countListSum, lopc_depth, lopc_flowSpeed, lopc_latitude, lopc_longitude, lopc_nonTransCount, lopc_time, lopc_transCount, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-06-26 17:13:09,506 process.py resample():273 [1] Resampling steps for 2010.340.01 INFO 2025-06-26 17:13:09,507 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-06-26 17:13:09,540 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2010.340.01/dorado_2010.340.01_align.nc mission netCDF file INFO 2025-06-26 17:13:09,546 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2010.340.01/dorado_2010.340.01_align.nc mission netCDF file INFO 2025-06-26 17:13:09,547 resample.py get_mission_start_end():1145 [1] navigation: 2010-12-06T20:14:50.061586432 to 2010-12-06T23:15:55.297266688 (0 days 00:00:00.079994368 before mission_end) INFO 2025-06-26 17:13:09,549 resample.py get_mission_start_end():1145 [1] hs2 : 2010-12-06T20:14:11.204248064 to 2010-12-06T23:15:55.297266688 (0 days 00:00:00.079994368 before mission_end) INFO 2025-06-26 17:13:09,550 resample.py get_mission_start_end():1145 [1] ctd1 : 2010-12-06T20:14:30.112952832 to 2010-12-06T23:15:55.377261056 (0 days 00:00:00 before mission_end) INFO 2025-06-26 17:13:09,552 resample.py get_mission_start_end():1145 [1] ctd2 : 2010-12-06T20:14:30.342937344 to 2010-12-06T23:15:55.337264128 (0 days 00:00:00.039996928 before mission_end) INFO 2025-06-26 17:13:09,553 resample.py get_mission_start_end():1145 [1] isus : 2010-12-06T20:15:22.979331328 to 2010-12-06T23:15:54.727305984 (0 days 00:00:00.649955072 before mission_end) INFO 2025-06-26 17:13:09,554 resample.py get_mission_start_end():1145 [1] biolume : 2010-12-06T20:13:59.705001728 to 2010-12-06T23:15:54.797266688 (0 days 00:00:00.579994368 before mission_end) INFO 2025-06-26 17:13:09,556 resample.py get_mission_start_end():1145 [1] lopc : 2010-12-06T20:18:05.104734720 to 2010-12-06T21:10:56.104734720 (0 days 02:04:59.272526336 before mission_end) WARNING 2025-06-26 17:13:09,556 resample.py get_mission_start_end():1156 [1] Instrument lopc has a gap > 5 minutes at the end of the mission: 0 days 02:04:59.272526336 INFO 2025-06-26 17:13:09,557 resample.py get_mission_start_end():1145 [1] tailcone : 2010-12-06T20:14:01.254929664 to 2010-12-06T23:15:55.337264128 (0 days 00:00:00.039996928 before mission_end) INFO 2025-06-26 17:13:09,558 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2010.340.01/dorado_2010.340.01_align.nc mission netCDF file INFO 2025-06-26 17:13:09,559 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-06-26 17:13:09,704 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-06-26 17:13:09,729 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-06-26 17:13:09,752 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-06-26 17:13:09,776 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 17:13:09,798 resample.py resample_variable():1031 [1] Resampling hs2_bbp420 with frequency 1S following 3 point median filter INFO 2025-06-26 17:13:09,819 resample.py resample_variable():1031 [1] Resampling hs2_bbp700 with frequency 1S following 3 point median filter INFO 2025-06-26 17:13:09,840 resample.py resample_variable():1031 [1] Resampling hs2_fl700 with frequency 1S following 3 point median filter INFO 2025-06-26 17:13:09,861 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 17:13:09,880 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 17:13:09,900 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 17:13:09,918 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 17:13:09,937 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 17:13:09,956 resample.py resample_variable():1031 [1] Resampling ctd1_salinity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 17:13:09,975 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-06-26 17:13:09,995 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-06-26 17:13:10,015 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-06-26 17:13:10,035 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-06-26 17:13:10,057 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 17:13:10,078 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 17:13:10,098 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 17:13:10,118 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 17:13:10,138 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 17:13:10,158 resample.py resample_variable():1031 [1] Resampling ctd2_salinity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 17:13:10,178 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-06-26 17:13:10,191 resample.py resample_variable():1031 [1] Resampling isus_nitrate with frequency 1S following 3 point median filter INFO 2025-06-26 17:13:10,202 resample.py resample_variable():1031 [1] Resampling isus_temp with frequency 1S following 3 point median filter INFO 2025-06-26 17:13:10,213 resample.py resample_variable():1031 [1] Resampling isus_quality with frequency 1S following 3 point median filter INFO 2025-06-26 17:13:10,224 resample.py resample_variable():1031 [1] Resampling biolume_flow with frequency 1S following 3 point median filter INFO 2025-06-26 17:13:10,233 resample.py resample_variable():1031 [1] Resampling biolume_avg_biolume with frequency 1S following 3 point median filter INFO 2025-06-26 17:13:10,237 resample.py set_proxy_parameters():520 [1] Setting biolume proxy parameters for period4 INFO 2025-06-26 17:13:10,237 resample.py add_biolume_proxies():549 [1] Adding biolume proxy variables computed from biolume_raw INFO 2025-06-26 17:13:10,609 resample.py add_biolume_proxies():595 [1] Using flash_threshold = 1.0000e+11 INFO 2025-06-26 17:13:10,681 resample.py add_biolume_proxies():638 [1] Computing flashes per liter: nbflash_high, nbflash_low INFO 2025-06-26 17:13:10,721 resample.py add_biolume_proxies():666 [1] Saving flash intensity: biolume_intflash - the upper bound of the background envelope INFO 2025-06-26 17:13:10,739 resample.py add_biolume_proxies():683 [1] Saving Background bioluminescence (dinoflagellates proxy) INFO 2025-06-26 17:13:10,755 resample.py select_nighttime_bl_raw():432 [1] No sunset or sunrise found during this mission. INFO 2025-06-26 17:13:10,756 resample.py add_biolume_proxies():694 [1] No nighttime_bl_raw data to compute adinos, diatoms, hdinos proxies INFO 2025-06-26 17:13:10,769 resample.py resample_variable():1031 [1] Resampling lopc_countListSum with frequency 1S following 3 point median filter INFO 2025-06-26 17:13:10,769 resample.py resample_variable():1038 [1] Padding lopc_countListSum with 0 days 02:04:59.272526336 of NaNs to the end of mission INFO 2025-06-26 17:13:10,779 resample.py resample_variable():1031 [1] Resampling lopc_transCount with frequency 1S following 3 point median filter INFO 2025-06-26 17:13:10,779 resample.py resample_variable():1038 [1] Padding lopc_transCount with 0 days 02:04:59.272526336 of NaNs to the end of mission INFO 2025-06-26 17:13:10,788 resample.py resample_variable():1031 [1] Resampling lopc_nonTransCount with frequency 1S following 3 point median filter INFO 2025-06-26 17:13:10,788 resample.py resample_variable():1038 [1] Padding lopc_nonTransCount with 0 days 02:04:59.272526336 of NaNs to the end of mission INFO 2025-06-26 17:13:10,797 resample.py resample_variable():1031 [1] Resampling lopc_LCcount with frequency 1S following 3 point median filter INFO 2025-06-26 17:13:10,797 resample.py resample_variable():1038 [1] Padding lopc_LCcount with 0 days 02:04:59.272526336 of NaNs to the end of mission INFO 2025-06-26 17:13:10,806 resample.py resample_variable():1031 [1] Resampling lopc_flowSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 17:13:10,806 resample.py resample_variable():1038 [1] Padding lopc_flowSpeed with 0 days 02:04:59.272526336 of NaNs to the end of mission INFO 2025-06-26 17:13:10,829 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-06-26 17:13:11,018 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2010.340.01/dorado_2010.340.01_1S.nc INFO 2025-06-26 17:13:12,962 create_products.py _get_best_ctd():380 [1] ctdToUse = ctd1 INFO 2025-06-26 17:13:17,398 create_products.py gulper_odv():522 [1] Wrote 4 Gulper data lines to /data/auv_data/dorado/missionodvs/2010.340.01/dorado_2010.340.01_1S_Gulper.txt INFO 2025-06-26 17:13:17,399 process.py archive():337 [1] Archiving steps for 2010.340.01 INFO 2025-06-26 17:13:17,399 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2010.340.01/dorado_2010.340.01, BASE_PATH = /data/auv_data INFO 2025-06-26 17:13:17,399 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2010.340.01/dorado_2010.340.01 files to /Volumes/AUVCTD/surveys/2010/netcdf INFO 2025-06-26 17:13:17,400 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2010/netcdf/dorado_2010.340.01_1S.nc INFO 2025-06-26 17:13:17,430 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.340.01/dorado_2010.340.01_1S.nc /Volumes/AUVCTD/surveys/2010/netcdf done. INFO 2025-06-26 17:13:17,432 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2010/netcdf/dorado_2010.340.01_cal.nc INFO 2025-06-26 17:13:17,512 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.340.01/dorado_2010.340.01_cal.nc /Volumes/AUVCTD/surveys/2010/netcdf done. INFO 2025-06-26 17:13:17,513 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2010/netcdf/dorado_2010.340.01_align.nc INFO 2025-06-26 17:13:17,623 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.340.01/dorado_2010.340.01_align.nc /Volumes/AUVCTD/surveys/2010/netcdf done. INFO 2025-06-26 17:13:17,640 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.340.01/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010340/2010.340.01 done. INFO 2025-06-26 17:13:17,655 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.340.01/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010340/2010.340.01 done. INFO 2025-06-26 17:13:17,660 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.340.01/gps.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010340/2010.340.01 done. INFO 2025-06-26 17:13:17,675 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.340.01/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010340/2010.340.01 done. INFO 2025-06-26 17:13:17,709 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.340.01/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010340/2010.340.01 done. INFO 2025-06-26 17:13:17,715 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.340.01/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010340/2010.340.01 done. INFO 2025-06-26 17:13:17,731 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.340.01/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010340/2010.340.01 done. INFO 2025-06-26 17:13:17,745 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.340.01/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010340/2010.340.01 done. INFO 2025-06-26 17:13:17,775 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.340.01/biolume.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010340/2010.340.01 done. INFO 2025-06-26 17:13:17,790 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.340.01/lopc.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010340/2010.340.01 done. INFO 2025-06-26 17:13:17,790 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-06-26 17:13:17,791 archive.py copy_to_AUVTCD():133 [1] Removing /Volumes/AUVCTD/surveys/2010/odv/dorado_2010.340.01_1S_Gulper.txt INFO 2025-06-26 17:13:17,797 archive.py copy_to_AUVTCD():136 [1] copyfile /data/auv_data/dorado/missionodvs/2010.340.01/dorado_2010.340.01_1S_Gulper.txt /Volumes/AUVCTD/surveys/2010/odv done. INFO 2025-06-26 17:13:17,797 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.340.01/dorado_2010.340.01_processing.log /Volumes/AUVCTD/surveys/2010/netcdf