INFO 2025-06-26 17:11:18,496 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2005 --end_year 2014 --num_cores 1 -v --noinput --clobber INFO 2025-06-26 17:11:18,496 process.py process_mission():434 [1] dorado_info[mission]["comment"] = Out and back from M1 - ctdToUse = ctd1 INFO 2025-06-26 17:11:18,496 process.py process_mission():449 [1] Processing AUVCTD mission 2010.340.00 by user docker_user on host eae60d30a712 INFO 2025-06-26 17:11:18,496 process.py download_process():165 [1] Download and processing steps for 2010.340.00 INFO 2025-06-26 17:11:18,496 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2010/2010340/2010.340.00 INFO 2025-06-26 17:11:18,497 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2010/2010340/2010.340.00 to /data/auv_data/dorado/missionlogs/2010.340.00 INFO 2025-06-26 17:11:21,274 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2010.340.00 INFO 2025-06-26 17:11:21,275 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.340.00/ctdDriver.log (4094603 bytes) INFO 2025-06-26 17:11:21,565 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/dorado/missionlogs/2010.340.00/ctdDriver.log: [ 174 273 283 458 488 1079 1082 1330 1409 1797 1975 1978 2097 2181 2303 2325 2598 2599 2618 3203 3308 3605 4008 4860 5345 5403 6075 7041 7723 9086 11587 16586 17558 18684 20746 23817 23864 24339 28362 28888 32158 35787 36309 36530 37720 39948 40688 42577] INFO 2025-06-26 17:11:21,576 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.340.00/ctdDriver2.log (4101023 bytes) INFO 2025-06-26 17:11:21,869 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/dorado/missionlogs/2010.340.00/ctdDriver2.log: [ 43 232 240 338 348 473 522 552 783 1146 1150 1397 1477 1721 2118 2166 2373 2668 2687 3271 3375 3673 4075 5469 6139 7788 9152 14538 15553 16657 17628 18753 23886 23933 28953 32223 35853 37785 38064 40015] INFO 2025-06-26 17:11:21,885 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.340.00/gps.log (30236 bytes) INFO 2025-06-26 17:11:21,896 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.340.00/hydroscatlog.log (3599254 bytes) INFO 2025-06-26 17:11:22,265 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/dorado/missionlogs/2010.340.00/hydroscatlog.log: [ 2 68 103 112 167 302 529 621 629 763 782 812 814 917 946 1189 1232 1277 1562 1802 1847 2133 2137 2343 2467 2490 2764 2783 2784 3204 3413 3512 4125 4762 4808 5029 5102 5576 5751 7422 7513 7616 7847 7901 9199 9264 9342 9752 10506 11017 11219 12037 12582 12757 12798 14656 16394 16772 16773 17745 18872 18948 19075 20088 20934 24055 24468 24528 27769 28551 28994 31186 32264 32348 33018 34724 36498 37534 37618 37805 37910 40876 41720 42768] INFO 2025-06-26 17:11:22,276 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.340.00/navigation.log (12543054 bytes) INFO 2025-06-26 17:11:23,179 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.340.00/isuslog.log (264949 bytes) INFO 2025-06-26 17:11:23,208 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.340.00/parosci.log (4679030 bytes) INFO 2025-06-26 17:11:23,626 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.340.00/tailCone.log (2556091 bytes) INFO 2025-06-26 17:11:23,944 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.340.00/biolume.log (2998042 bytes) INFO 2025-06-26 17:11:24,237 logs2netcdfs.py write_variables():575 [1] Expanding original timeTag to time60Hz variable for raw data INFO 2025-06-26 17:11:24,400 logs2netcdfs.py download_process_logs():807 [1] Time to process: 3.13 seconds INFO 2025-06-26 17:11:24,400 process.py download_process():198 [1] Processing file /data/auv_data/dorado/missionlogs/2010.340.00/lopc.bin (14311000 bytes) INFO 2025-06-26 17:11:24,400 lopcToNetCDF.py main():2297 [1] Processing begun: Thu Jun 26 17:11:24 2025 INFO 2025-06-26 17:11:24,401 lopcToNetCDF.py constructTimestampList():1296 [1] parosci_nc = /data/auv_data/dorado/missionnetcdfs/2010.340.00/parosci.nc INFO 2025-06-26 17:11:24,401 lopcToNetCDF.py constructTimestampList():1297 [1] Using NetCDF4 to get start and end epoch seconds for this mission from this URL: INFO 2025-06-26 17:11:24,401 lopcToNetCDF.py constructTimestampList():1300 [1] /data/auv_data/dorado/missionnetcdfs/2010.340.00/parosci.nc INFO 2025-06-26 17:11:24,404 lopcToNetCDF.py constructTimestampList():1317 [1] From associated parosci.nc file: sensor_on_time = 1291655484.1, sensor_off_time = 1291666207.1 INFO 2025-06-26 17:11:24,404 lopcToNetCDF.py constructTimestampList():1322 [1] Duration is 10723 seconds. Expecting to read 21446 L frames from the lopc.bin file. INFO 2025-06-26 17:11:24,404 lopcToNetCDF.py constructTimestampList():1330 [1] recCount not passed in, assuming we'll have 21446 records from the lopc.bin file. INFO 2025-06-26 17:11:24,531 lopcToNetCDF.py main():2321 [1] Examined sibling parosci.nc file to find startTime = 2010-12-06 17:11:24 Z and endTime = 2010-12-06 20:10:07 Z with 21446 records expected to be read from lopc.bin INFO 2025-06-26 17:11:24,531 lopcToNetCDF.py unpackLOPCbin():723 [1] >>> Unpacking LOPC data from /data/auv_data/dorado/missionlogs/2010.340.00/lopc.bin INFO 2025-06-26 17:11:24,532 lopcToNetCDF.py unpackLOPCbin():724 [1] >>> Will write to NetCDF file /data/auv_data/dorado/missionnetcdfs/2010.340.00/lopc.nc INFO 2025-06-26 17:11:24,532 lopcToNetCDF.py openNetCDFFile():1861 [1] Will output NetCDF file to /data/auv_data/dorado/missionnetcdfs/2010.340.00/lopc.nc INFO 2025-06-26 17:11:24,532 lopcToNetCDF.py openNetCDFFile():1887 [1] missionName = 2010.340.00 INFO 2025-06-26 17:11:24,533 lopcToNetCDF.py openNetCDFFile():1910 [1] Writing bin axis for len(self.dataStructure['binSizeList']) = 994 INFO 2025-06-26 17:11:24,651 lopcToNetCDF.py unpackLOPCbin():951 [1] L Frames sample M Frames ShortLFrame LBeforeMEnd MBeforeLEnd UnknownFrame Garbled L INFO 2025-06-26 17:11:24,652 lopcToNetCDF.py unpackLOPCbin():969 [1] Count Count Count Error Error Error Error Error INFO 2025-06-26 17:11:24,652 lopcToNetCDF.py unpackLOPCbin():987 [1] -------- -------- -------- ----------- ----------- ----------- ----------- ------------ INFO 2025-06-26 17:11:36,725 lopcToNetCDF.py unpackLOPCbin():1013 [1] 10000 10000 32815 0 0 0 0 0 12.2 seconds, last L Frame: 21446 INFO 2025-06-26 17:11:44,229 lopcToNetCDF.py unpackLOPCbin():1013 [1] 20000 20000 52320 0 0 0 0 0 7.5 seconds, last L Frame: 21446 INFO 2025-06-26 17:11:44,789 lopcToNetCDF.py main():2345 [1] >>> Done reading file. INFO 2025-06-26 17:11:44,789 lopcToNetCDF.py main():2346 [1] lFrameCount = 21445, mFrameCount = 53592 INFO 2025-06-26 17:11:44,789 lopcToNetCDF.py constructTimestampList():1296 [1] parosci_nc = /data/auv_data/dorado/missionnetcdfs/2010.340.00/parosci.nc INFO 2025-06-26 17:11:44,789 lopcToNetCDF.py constructTimestampList():1297 [1] Using NetCDF4 to get start and end epoch seconds for this mission from this URL: INFO 2025-06-26 17:11:44,790 lopcToNetCDF.py constructTimestampList():1300 [1] /data/auv_data/dorado/missionnetcdfs/2010.340.00/parosci.nc INFO 2025-06-26 17:11:44,793 lopcToNetCDF.py constructTimestampList():1317 [1] From associated parosci.nc file: sensor_on_time = 1291655484.1, sensor_off_time = 1291666207.1 INFO 2025-06-26 17:11:44,793 lopcToNetCDF.py constructTimestampList():1322 [1] Duration is 10723 seconds. Expecting to read 21446 L frames from the lopc.bin file. INFO 2025-06-26 17:11:44,793 lopcToNetCDF.py constructTimestampList():1330 [1] recCount not passed in, assuming we'll have 21446 records from the lopc.bin file. INFO 2025-06-26 17:11:44,793 lopcToNetCDF.py constructTimestampList():1340 [1] Calling correctSampleCountList() with sampleCountList[0] = 1 and len(sampleCountList) = 21445 INFO 2025-06-26 17:11:44,795 lopcToNetCDF.py correctSampleCountList():1737 [1] Found overflows at indices: [] INFO 2025-06-26 17:11:44,795 lopcToNetCDF.py correctSampleCountList():1745 [1] Original sampleCountList = [ 1 2 3 ... 21443 21444 21445] INFO 2025-06-26 17:11:44,796 lopcToNetCDF.py correctSampleCountList():1746 [1] Found 0 0 values at indices: [] INFO 2025-06-26 17:11:44,796 lopcToNetCDF.py correctSampleCountList():1779 [1] Found 0 stuck values at indices: [] INFO 2025-06-26 17:11:44,796 lopcToNetCDF.py deSpike():1588 [1] d_sampleCountList = [1 1 1 ... 1 1 1] INFO 2025-06-26 17:11:44,796 lopcToNetCDF.py deSpike():1590 [1] Found 0 spike indicators at indices: [] INFO 2025-06-26 17:11:44,796 lopcToNetCDF.py correctSampleCountList():1805 [1] After despike() sampleCountList = [ 1 2 3 ... 21443 21444 21445] INFO 2025-06-26 17:11:44,796 lopcToNetCDF.py constructTimestampList():1347 [1] correctSampleCountList() returned correctedSampleCountList = [ 1 2 3 ... 21443 21444 21445] with len(correctedSampleCountList) = 21445 INFO 2025-06-26 17:11:44,796 lopcToNetCDF.py constructTimestampList():1358 [1] Subtracting 1 from all values of correctedSampleCountList INFO 2025-06-26 17:11:44,796 lopcToNetCDF.py constructTimestampList():1363 [1] Constructing timestampArray from instrument corrected sampleCount and constant deltaT = 0.500000 INFO 2025-06-26 17:11:44,797 lopcToNetCDF.py constructTimestampList():1368 [1] New re-zeroed correctedSampleCountList = [0.00000e+00 5.00000e-01 1.00000e+00 ... 1.07210e+04 1.07215e+04 1.07220e+04] INFO 2025-06-26 17:11:44,797 lopcToNetCDF.py constructTimestampList():1379 [1] timestampArray = [1.29165548e+09 1.29165548e+09 1.29165549e+09 ... 1.29166621e+09 1.29166621e+09 1.29166621e+09] INFO 2025-06-26 17:11:44,797 lopcToNetCDF.py constructTimestampList():1380 [1] timestampArray[:2] = [1291655484.1 1291655484.6, ..., timestampArray[-2:] = 1291666205.6 1291666206.1] INFO 2025-06-26 17:11:44,820 lopcToNetCDF.py constructTimestampList():1389 [1] timestampList[:2] = [np.float64(1291655484.0755482), np.float64(1291655484.5755482)], ..., timestampList[-2:] = [np.float64(1291666205.5755482), np.float64(1291666206.0755482)]] INFO 2025-06-26 17:11:44,820 lopcToNetCDF.py constructTimestampList():1394 [1] Subsampling correctedSampleCountList (len = 21445) according to what got written to the netCDF file by the binning interval INFO 2025-06-26 17:11:44,820 lopcToNetCDF.py constructTimestampList():1399 [1] lFrameCountWrittenList[:2] = [20, 41], ... lFrameCountWrittenList[-2:] = [21419, 21440] INFO 2025-06-26 17:11:44,820 lopcToNetCDF.py constructTimestampList():1420 [1] len(subSampledCorrectedSampleCountList) = 1021 INFO 2025-06-26 17:11:44,820 lopcToNetCDF.py constructTimestampList():1439 [1] len(timestampList) = 21445 INFO 2025-06-26 17:11:44,820 lopcToNetCDF.py constructTimestampList():1440 [1] timestampList[:2] = [np.float64(1291655484.0755482), np.float64(1291655484.5755482)], ..., timestampList[-2:] = [np.float64(1291666205.5755482), np.float64(1291666206.0755482)]] INFO 2025-06-26 17:11:44,820 lopcToNetCDF.py constructTimestampList():1446 [1] Subsampling timestampList (len = 21445) according to what got written to the netCDF file by the binning interval INFO 2025-06-26 17:11:44,820 lopcToNetCDF.py constructTimestampList():1457 [1] Taking indices [[np.int32(19), np.int32(40)] ... [np.int32(21418), np.int32(21439)]] from timestampList to create subSampledTimestampList INFO 2025-06-26 17:11:44,821 lopcToNetCDF.py constructTimestampList():1463 [1] len(subSampledTimestampList) = 1021 INFO 2025-06-26 17:11:44,821 lopcToNetCDF.py constructTimestampList():1477 [1] Finding elements of cFrameEsecsList that != -9999 INFO 2025-06-26 17:11:44,839 lopcToNetCDF.py closeNetCDFFile():2096 [1] Writing time axis for len(tsList) = 1021 INFO 2025-06-26 17:11:44,839 lopcToNetCDF.py closeNetCDFFile():2099 [1] tsList[:1] = [np.float64(1291655493.5755482)], ..., tsList[-2:] = [np.float64(1291666193.0755482), np.float64(1291666203.5755482)] INFO 2025-06-26 17:11:44,839 lopcToNetCDF.py closeNetCDFFile():2100 [1] Begin time = 2010-12-06 17:11:33 Z INFO 2025-06-26 17:11:44,839 lopcToNetCDF.py closeNetCDFFile():2103 [1] End time = 2010-12-06 20:10:03 Z INFO 2025-06-26 17:11:44,839 lopcToNetCDF.py closeNetCDFFile():2107 [1] Writing time axis for len(cFrameEsecsList) = 1021 INFO 2025-06-26 17:11:44,839 lopcToNetCDF.py closeNetCDFFile():2111 [1] cFrameEsecsList[:1] = [1.29165549e+09], ..., cFrameEsecsList[-2:] = [1.29166619e+09 1.29166620e+09] INFO 2025-06-26 17:11:44,840 lopcToNetCDF.py closeNetCDFFile():2116 [1] Begin time = 2010-12-06 17:11:34 Z INFO 2025-06-26 17:11:44,840 lopcToNetCDF.py closeNetCDFFile():2120 [1] End time = 2010-12-06 20:10:00 Z INFO 2025-06-26 17:11:44,844 lopcToNetCDF.py main():2381 [1] Created file: /data/auv_data/dorado/missionnetcdfs/2010.340.00/lopc.nc INFO 2025-06-26 17:11:44,844 lopcToNetCDF.py main():2384 [1] Processing finished: Thu Jun 26 17:11:44 2025 Elapsed processing time from start of processing = 20 seconds INFO 2025-06-26 17:11:44,845 process.py calibrate():227 [1] Calibration steps for 2010.340.00 INFO 2025-06-26 17:11:44,981 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-06-26 17:11:44,983 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-06-26 17:11:45,624 calibrate.py _nudge_pos():1806 [1] 111: 0.130 0.0028141 -0.0017757 2401 8.21 50.872 -40.078 2010-12-06T17:21:22.844529664 INFO 2025-06-26 17:11:46,327 calibrate.py _nudge_pos():1806 [1] 187: 0.130 0.0027108 -0.0122127 13198 44.25 9.094 -51.146 2010-12-06T18:06:52.847511552 INFO 2025-06-26 17:11:46,868 calibrate.py _nudge_pos():1806 [1] 245: 0.140 0.0000750 -0.0000185 35 0.11 98.203 -30.295 2010-12-06T18:07:56.843127552 INFO 2025-06-26 17:11:46,878 calibrate.py _nudge_pos():1806 [1] 246: 0.130 -0.0017795 -0.0159315 13925 46.53 -5.678 -63.445 2010-12-06T18:54:28.851862016 INFO 2025-06-26 17:11:47,548 calibrate.py _nudge_pos():1806 [1] 318: 0.140 -0.0077852 -0.0123865 14052 46.91 -24.634 -48.925 2010-12-06T19:42:34.844157952 INFO 2025-06-26 17:11:48,247 calibrate.py _nudge_pos():1806 [1] 393: 0.140 0.0015100 -0.0004297 7803 26.06 8.599 -3.055 2010-12-06T20:09:52.851946496 INFO 2025-06-26 17:11:48,385 calibrate.py _nudge_pos():1862 [1] 354: - - - 1 0.00 - - INFO 2025-06-26 17:11:48,385 calibrate.py _nudge_pos():1868 [1] Points in final series = 53138 WARNING 2025-06-26 17:11:48,463 calibrate.py _depth_process():2193 [1] Expected sample_rate to be 10 Hz, instead it's 9.09 Hz INFO 2025-06-26 17:11:54,071 calibrate.py _geometric_depth_correction():3423 [1] hs2: d_beg_time_diff: 9 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 17:11:57,082 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 42 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 17:11:57,407 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 42 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 17:11:57,408 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2010.340.00/ctd1.nc INFO 2025-06-26 17:11:57,410 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd1_salinity values to NaN INFO 2025-06-26 17:11:57,410 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-06-26 17:11:57,410 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1 INFO 2025-06-26 17:11:59,755 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 25 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 17:12:00,090 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 25 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 17:12:00,093 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2010.340.00/ctd2.nc INFO 2025-06-26 17:12:00,095 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd2_salinity values to NaN INFO 2025-06-26 17:12:00,095 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-06-26 17:12:00,095 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2 INFO 2025-06-26 17:12:00,118 calibrate.py _biolume_process():3128 [1] Checking for non-monotonic increasing time60hz INFO 2025-06-26 17:12:00,664 calibrate.py _biolume_process():3131 [1] Removing non-monotonic increasing time60hz at indices: [ 60 61 62 ... 631744 631745 631746] INFO 2025-06-26 17:12:00,761 calibrate.py _geometric_depth_correction():3423 [1] biolume: d_beg_time_diff: -2 seconds, d_end_time_diff: -1 seconds ERROR 2025-06-26 17:12:10,486 calibrate.py process_logs():3542 [1] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2010.340.00 INFO 2025-06-26 17:12:10,531 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2010.340.00/dorado_2010.340.00_cal.nc INFO 2025-06-26 17:12:15,328 calibrate.py write_netcdf():3512 [1] Data variables written: biolume_avg_biolume, biolume_depth, biolume_flow, biolume_raw, biolume_time, biolume_time60hz, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_salinity_onboard, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_salinity_onboard, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, hs2_bbp420, hs2_bbp700, hs2_depth, hs2_fl700, hs2_time, isus_nitrate, isus_quality, isus_temp, isus_time, lopc_LCcount, lopc_countListSum, lopc_flowSpeed, lopc_nonTransCount, lopc_time, lopc_transCount, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, tailcone_propRpm, tailcone_time, time INFO 2025-06-26 17:12:15,334 process.py align():251 [1] Alignment steps for 2010.340.00 INFO 2025-06-26 17:12:15,370 align.py process_cal():139 [1] Processing dorado_2010.340.00_cal.nc from /data/auv_data/dorado/missionnetcdfs/2010.340.00 INFO 2025-06-26 17:12:15,389 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 17:12:15,392 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 4.98 INFO 2025-06-26 17:12:15,433 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 17:12:15,436 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 4.98 INFO 2025-06-26 17:12:15,478 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 17:12:15,482 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 4.98 INFO 2025-06-26 17:12:15,506 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-06-26 17:12:15,506 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-06-26 17:12:15,523 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 17:12:15,526 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 4.98 INFO 2025-06-26 17:12:15,568 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2010.340.00_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:12:15,571 align.py process_cal():249 [1] hs2_bbp420: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 17:12:15,607 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2010.340.00_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:12:15,611 align.py process_cal():249 [1] hs2_bbp700: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 17:12:15,647 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2010.340.00_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:12:15,650 align.py process_cal():249 [1] hs2_fl700: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 17:12:15,686 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.340.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:12:15,690 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 17:12:15,729 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.340.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:12:15,732 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 17:12:15,768 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.340.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:12:15,772 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 17:12:15,808 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.340.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:12:15,812 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 17:12:15,849 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.340.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:12:15,853 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 17:12:15,890 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.340.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:12:15,893 align.py process_cal():249 [1] ctd1_salinity_onboard: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 17:12:15,929 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.340.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:12:15,933 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 17:12:15,970 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.340.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:12:15,973 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 17:12:16,010 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.340.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:12:16,013 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 17:12:16,051 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.340.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:12:16,055 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 17:12:16,092 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.340.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:12:16,095 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 17:12:16,132 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.340.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:12:16,136 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 17:12:16,172 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.340.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:12:16,175 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 17:12:16,213 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.340.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:12:16,216 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 17:12:16,253 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.340.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:12:16,257 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 17:12:16,294 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.340.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:12:16,298 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 17:12:16,334 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.340.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:12:16,338 align.py process_cal():249 [1] ctd2_salinity_onboard: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 17:12:16,376 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.340.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:12:16,380 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 17:12:16,417 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.340.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 17:12:16,420 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 17:12:16,465 align.py process_cal():249 [1] isus_nitrate: instrument_sample_rate_hz = 0.78 INFO 2025-06-26 17:12:16,499 align.py process_cal():249 [1] isus_temp: instrument_sample_rate_hz = 0.78 INFO 2025-06-26 17:12:16,532 align.py process_cal():249 [1] isus_quality: instrument_sample_rate_hz = 0.78 INFO 2025-06-26 17:12:16,568 align.py process_cal():249 [1] biolume_flow: instrument_sample_rate_hz = 0.98 INFO 2025-06-26 17:12:16,604 align.py process_cal():249 [1] biolume_avg_biolume: instrument_sample_rate_hz = 0.98 INFO 2025-06-26 17:12:16,652 align.py process_cal():249 [1] biolume_raw: instrument_sample_rate_hz = 58.84 INFO 2025-06-26 17:12:16,932 align.py process_cal():249 [1] lopc_countListSum: instrument_sample_rate_hz = 0.10 INFO 2025-06-26 17:12:16,965 align.py process_cal():249 [1] lopc_transCount: instrument_sample_rate_hz = 0.10 INFO 2025-06-26 17:12:16,997 align.py process_cal():249 [1] lopc_nonTransCount: instrument_sample_rate_hz = 0.10 INFO 2025-06-26 17:12:17,030 align.py process_cal():249 [1] lopc_LCcount: instrument_sample_rate_hz = 0.10 INFO 2025-06-26 17:12:17,061 align.py process_cal():249 [1] lopc_flowSpeed: instrument_sample_rate_hz = 0.10 INFO 2025-06-26 17:12:17,095 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 4.96 INFO 2025-06-26 17:12:17,126 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2010.340.00/dorado_2010.340.00_align.nc INFO 2025-06-26 17:12:17,242 align.py write_netcdf():342 [1] Data variables written: biolume_avg_biolume, biolume_depth, biolume_flow, biolume_latitude, biolume_longitude, biolume_raw, biolume_time, biolume_time60hz, ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_salinity_onboard, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_salinity_onboard, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, hs2_bbp420, hs2_bbp700, hs2_depth, hs2_fl700, hs2_latitude, hs2_longitude, hs2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, lopc_LCcount, lopc_countListSum, lopc_depth, lopc_flowSpeed, lopc_latitude, lopc_longitude, lopc_nonTransCount, lopc_time, lopc_transCount, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-06-26 17:12:17,245 process.py resample():273 [1] Resampling steps for 2010.340.00 INFO 2025-06-26 17:12:17,246 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-06-26 17:12:17,280 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2010.340.00/dorado_2010.340.00_align.nc mission netCDF file INFO 2025-06-26 17:12:17,286 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2010.340.00/dorado_2010.340.00_align.nc mission netCDF file INFO 2025-06-26 17:12:17,288 resample.py get_mission_start_end():1145 [1] navigation: 2010-12-06T17:12:13.862137600 to 2010-12-06T20:10:07.050973952 (0 days 00:00:00 before mission_end) INFO 2025-06-26 17:12:17,289 resample.py get_mission_start_end():1145 [1] hs2 : 2010-12-06T17:11:33.284916992 to 2010-12-06T20:10:07.020976128 (0 days 00:00:00.029997824 before mission_end) INFO 2025-06-26 17:12:17,291 resample.py get_mission_start_end():1145 [1] ctd1 : 2010-12-06T17:12:06.282656768 to 2010-12-06T20:10:07.050973952 (0 days 00:00:00 before mission_end) INFO 2025-06-26 17:12:17,292 resample.py get_mission_start_end():1145 [1] ctd2 : 2010-12-06T17:11:49.843782912 to 2010-12-06T20:10:06.980978688 (0 days 00:00:00.069995264 before mission_end) INFO 2025-06-26 17:12:17,294 resample.py get_mission_start_end():1145 [1] isus : 2010-12-06T17:12:44.580033024 to 2010-12-06T20:10:06.161034752 (0 days 00:00:00.889939200 before mission_end) INFO 2025-06-26 17:12:17,295 resample.py get_mission_start_end():1145 [1] biolume : 2010-12-06T17:11:22.045652992 to 2010-12-06T20:10:06.550973952 (0 days 00:00:00.500000 before mission_end) INFO 2025-06-26 17:12:17,296 resample.py get_mission_start_end():1145 [1] lopc : 2010-12-06T17:11:33.575548160 to 2010-12-06T20:10:03.575548160 (0 days 00:00:03.475425792 before mission_end) INFO 2025-06-26 17:12:17,298 resample.py get_mission_start_end():1145 [1] tailcone : 2010-12-06T17:11:22.545652992 to 2010-12-06T20:10:06.990978048 (0 days 00:00:00.059995904 before mission_end) INFO 2025-06-26 17:12:17,298 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2010.340.00/dorado_2010.340.00_align.nc mission netCDF file INFO 2025-06-26 17:12:17,299 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-06-26 17:12:17,433 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-06-26 17:12:17,458 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-06-26 17:12:17,482 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-06-26 17:12:17,508 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 17:12:17,533 resample.py resample_variable():1031 [1] Resampling hs2_bbp420 with frequency 1S following 3 point median filter INFO 2025-06-26 17:12:17,556 resample.py resample_variable():1031 [1] Resampling hs2_bbp700 with frequency 1S following 3 point median filter INFO 2025-06-26 17:12:17,577 resample.py resample_variable():1031 [1] Resampling hs2_fl700 with frequency 1S following 3 point median filter INFO 2025-06-26 17:12:17,598 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 17:12:17,617 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 17:12:17,637 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 17:12:17,657 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 17:12:17,676 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 17:12:17,695 resample.py resample_variable():1031 [1] Resampling ctd1_salinity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 17:12:17,716 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-06-26 17:12:17,736 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-06-26 17:12:17,756 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-06-26 17:12:17,776 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-06-26 17:12:17,798 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 17:12:17,820 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 17:12:17,842 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 17:12:17,872 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 17:12:17,893 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 17:12:17,915 resample.py resample_variable():1031 [1] Resampling ctd2_salinity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 17:12:17,937 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-06-26 17:12:17,950 resample.py resample_variable():1031 [1] Resampling isus_nitrate with frequency 1S following 3 point median filter INFO 2025-06-26 17:12:17,962 resample.py resample_variable():1031 [1] Resampling isus_temp with frequency 1S following 3 point median filter INFO 2025-06-26 17:12:17,974 resample.py resample_variable():1031 [1] Resampling isus_quality with frequency 1S following 3 point median filter INFO 2025-06-26 17:12:17,984 resample.py resample_variable():1031 [1] Resampling biolume_flow with frequency 1S following 3 point median filter INFO 2025-06-26 17:12:17,995 resample.py resample_variable():1031 [1] Resampling biolume_avg_biolume with frequency 1S following 3 point median filter INFO 2025-06-26 17:12:17,999 resample.py set_proxy_parameters():520 [1] Setting biolume proxy parameters for period4 INFO 2025-06-26 17:12:17,999 resample.py add_biolume_proxies():549 [1] Adding biolume proxy variables computed from biolume_raw INFO 2025-06-26 17:12:18,374 resample.py add_biolume_proxies():595 [1] Using flash_threshold = 1.0000e+11 INFO 2025-06-26 17:12:18,443 resample.py add_biolume_proxies():633 [1] Zero flow values found: 127 of 10725 - replaced with 350 ml/s INFO 2025-06-26 17:12:18,443 resample.py add_biolume_proxies():638 [1] Computing flashes per liter: nbflash_high, nbflash_low INFO 2025-06-26 17:12:18,482 resample.py add_biolume_proxies():666 [1] Saving flash intensity: biolume_intflash - the upper bound of the background envelope INFO 2025-06-26 17:12:18,498 resample.py add_biolume_proxies():683 [1] Saving Background bioluminescence (dinoflagellates proxy) INFO 2025-06-26 17:12:18,514 resample.py select_nighttime_bl_raw():432 [1] No sunset or sunrise found during this mission. INFO 2025-06-26 17:12:18,515 resample.py add_biolume_proxies():694 [1] No nighttime_bl_raw data to compute adinos, diatoms, hdinos proxies INFO 2025-06-26 17:12:18,529 resample.py resample_variable():1031 [1] Resampling lopc_countListSum with frequency 1S following 3 point median filter INFO 2025-06-26 17:12:18,539 resample.py resample_variable():1031 [1] Resampling lopc_transCount with frequency 1S following 3 point median filter INFO 2025-06-26 17:12:18,548 resample.py resample_variable():1031 [1] Resampling lopc_nonTransCount with frequency 1S following 3 point median filter INFO 2025-06-26 17:12:18,556 resample.py resample_variable():1031 [1] Resampling lopc_LCcount with frequency 1S following 3 point median filter INFO 2025-06-26 17:12:18,565 resample.py resample_variable():1031 [1] Resampling lopc_flowSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 17:12:18,588 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-06-26 17:12:18,777 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2010.340.00/dorado_2010.340.00_1S.nc INFO 2025-06-26 17:12:21,660 create_products.py _get_best_ctd():380 [1] ctdToUse = ctd1 INFO 2025-06-26 17:12:24,639 create_products.py gulper_odv():522 [1] Wrote 2 Gulper data lines to /data/auv_data/dorado/missionodvs/2010.340.00/dorado_2010.340.00_1S_Gulper.txt INFO 2025-06-26 17:12:24,639 process.py archive():337 [1] Archiving steps for 2010.340.00 INFO 2025-06-26 17:12:24,639 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2010.340.00/dorado_2010.340.00, BASE_PATH = /data/auv_data INFO 2025-06-26 17:12:24,641 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2010.340.00/dorado_2010.340.00 files to /Volumes/AUVCTD/surveys/2010/netcdf INFO 2025-06-26 17:12:24,641 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2010/netcdf/dorado_2010.340.00_1S.nc INFO 2025-06-26 17:12:24,657 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.340.00/dorado_2010.340.00_1S.nc /Volumes/AUVCTD/surveys/2010/netcdf done. INFO 2025-06-26 17:12:24,657 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2010/netcdf/dorado_2010.340.00_cal.nc INFO 2025-06-26 17:12:24,748 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.340.00/dorado_2010.340.00_cal.nc /Volumes/AUVCTD/surveys/2010/netcdf done. INFO 2025-06-26 17:12:24,749 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2010/netcdf/dorado_2010.340.00_align.nc INFO 2025-06-26 17:12:24,858 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.340.00/dorado_2010.340.00_align.nc /Volumes/AUVCTD/surveys/2010/netcdf done. INFO 2025-06-26 17:12:24,877 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.340.00/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010340/2010.340.00 done. INFO 2025-06-26 17:12:24,893 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.340.00/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010340/2010.340.00 done. INFO 2025-06-26 17:12:24,897 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.340.00/gps.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010340/2010.340.00 done. INFO 2025-06-26 17:12:24,911 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.340.00/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010340/2010.340.00 done. INFO 2025-06-26 17:12:24,946 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.340.00/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010340/2010.340.00 done. INFO 2025-06-26 17:12:24,952 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.340.00/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010340/2010.340.00 done. INFO 2025-06-26 17:12:24,968 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.340.00/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010340/2010.340.00 done. INFO 2025-06-26 17:12:24,983 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.340.00/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010340/2010.340.00 done. INFO 2025-06-26 17:12:25,014 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.340.00/biolume.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010340/2010.340.00 done. INFO 2025-06-26 17:12:25,051 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.340.00/lopc.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010340/2010.340.00 done. INFO 2025-06-26 17:12:25,051 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-06-26 17:12:25,053 archive.py copy_to_AUVTCD():133 [1] Removing /Volumes/AUVCTD/surveys/2010/odv/dorado_2010.340.00_1S_Gulper.txt INFO 2025-06-26 17:12:25,057 archive.py copy_to_AUVTCD():136 [1] copyfile /data/auv_data/dorado/missionodvs/2010.340.00/dorado_2010.340.00_1S_Gulper.txt /Volumes/AUVCTD/surveys/2010/odv done. INFO 2025-06-26 17:12:25,057 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.340.00/dorado_2010.340.00_processing.log /Volumes/AUVCTD/surveys/2010/netcdf