INFO 2025-06-26 15:58:55,578 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2005 --end_year 2014 --num_cores 1 -v --noinput --clobber INFO 2025-06-26 15:58:55,578 process.py process_mission():434 [1] dorado_info[mission]["comment"] = ESP drifter missions out at station 67-70 with Flyer doing casts and ESP drifting south toward Davidson Seamount - no gulpers (Frederic sent me note about survey grouping) Faulty parosci lead to several mission depth aborts at beginning of this set of volume surveys - ctdToUse = ctd1 INFO 2025-06-26 15:58:55,578 process.py process_mission():449 [1] Processing AUVCTD mission 2010.261.00 by user docker_user on host eae60d30a712 INFO 2025-06-26 15:58:55,578 process.py download_process():165 [1] Download and processing steps for 2010.261.00 INFO 2025-06-26 15:58:55,578 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2010/2010261/2010.261.00 INFO 2025-06-26 15:58:55,578 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2010/2010261/2010.261.00 to /data/auv_data/dorado/missionlogs/2010.261.00 INFO 2025-06-26 15:59:01,842 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2010.261.00 INFO 2025-06-26 15:59:01,842 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.261.00/ctdDriver.log (24560843 bytes) INFO 2025-06-26 15:59:03,597 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/dorado/missionlogs/2010.261.00/ctdDriver.log: [ 45770 57885 108692 110043 121251 133272 171280 192855 198818 212824 215586 217125 218052 218113 233586 243438 251885 253248] INFO 2025-06-26 15:59:03,671 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.261.00/ctdDriver2.log (24560543 bytes) INFO 2025-06-26 15:59:05,370 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/dorado/missionlogs/2010.261.00/ctdDriver2.log: [ 7266 120767 132708 151840 152032 178712 197551 212241 218709 231911 240417] INFO 2025-06-26 15:59:05,448 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.261.00/gps.log (558860 bytes) INFO 2025-06-26 15:59:05,514 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.261.00/hydroscatlog.log (21485122 bytes) INFO 2025-06-26 15:59:07,660 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/dorado/missionlogs/2010.261.00/hydroscatlog.log: [ 55564 57104 57584 67294 109164 119714 120034 120194 150674 162160 165228 167709 172647 192068 196677 198329 229334 238965 249532 254494] INFO 2025-06-26 15:59:07,725 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.261.00/navigation.log (75419354 bytes) INFO 2025-06-26 15:59:13,096 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.261.00/isuslog.log (1592341 bytes) INFO 2025-06-26 15:59:13,254 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.261.00/parosci.log (24970982 bytes) INFO 2025-06-26 15:59:15,360 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.261.00/tailCone.log (15317467 bytes) INFO 2025-06-26 15:59:17,236 logs2netcdfs.py download_process_logs():807 [1] Time to process: 15.39 seconds INFO 2025-06-26 15:59:17,236 process.py download_process():198 [1] Processing file /data/auv_data/dorado/missionlogs/2010.261.00/lopc.bin (70635000 bytes) INFO 2025-06-26 15:59:17,236 lopcToNetCDF.py main():2297 [1] Processing begun: Thu Jun 26 15:59:17 2025 INFO 2025-06-26 15:59:17,236 lopcToNetCDF.py constructTimestampList():1296 [1] parosci_nc = /data/auv_data/dorado/missionnetcdfs/2010.261.00/parosci.nc INFO 2025-06-26 15:59:17,236 lopcToNetCDF.py constructTimestampList():1297 [1] Using NetCDF4 to get start and end epoch seconds for this mission from this URL: INFO 2025-06-26 15:59:17,236 lopcToNetCDF.py constructTimestampList():1300 [1] /data/auv_data/dorado/missionnetcdfs/2010.261.00/parosci.nc INFO 2025-06-26 15:59:17,241 lopcToNetCDF.py constructTimestampList():1317 [1] From associated parosci.nc file: sensor_on_time = 1284814547.1, sensor_off_time = 1284878530.0 INFO 2025-06-26 15:59:17,241 lopcToNetCDF.py constructTimestampList():1322 [1] Duration is 63982 seconds. Expecting to read 127964 L frames from the lopc.bin file. INFO 2025-06-26 15:59:17,241 lopcToNetCDF.py constructTimestampList():1330 [1] recCount not passed in, assuming we'll have 127964 records from the lopc.bin file. INFO 2025-06-26 15:59:17,987 lopcToNetCDF.py main():2321 [1] Examined sibling parosci.nc file to find startTime = 2010-09-18 12:55:47 Z and endTime = 2010-09-19 06:42:09 Z with 127964 records expected to be read from lopc.bin INFO 2025-06-26 15:59:17,987 lopcToNetCDF.py unpackLOPCbin():723 [1] >>> Unpacking LOPC data from /data/auv_data/dorado/missionlogs/2010.261.00/lopc.bin INFO 2025-06-26 15:59:17,987 lopcToNetCDF.py unpackLOPCbin():724 [1] >>> Will write to NetCDF file /data/auv_data/dorado/missionnetcdfs/2010.261.00/lopc.nc INFO 2025-06-26 15:59:17,988 lopcToNetCDF.py openNetCDFFile():1861 [1] Will output NetCDF file to /data/auv_data/dorado/missionnetcdfs/2010.261.00/lopc.nc INFO 2025-06-26 15:59:17,988 lopcToNetCDF.py openNetCDFFile():1887 [1] missionName = 2010.261.00 INFO 2025-06-26 15:59:17,988 lopcToNetCDF.py openNetCDFFile():1910 [1] Writing bin axis for len(self.dataStructure['binSizeList']) = 994 WARNING 2025-06-26 15:59:17,993 lopcToNetCDF.py readCframeData():665 [1] Unable to parse a float from the string cstr[:70] = A0166294 WARNING 2025-06-26 15:59:17,993 lopcToNetCDF.py readCframeData():665 [1] Unable to parse a float from the string cstr[:70] = INFO 2025-06-26 15:59:18,026 lopcToNetCDF.py unpackLOPCbin():951 [1] L Frames sample M Frames ShortLFrame LBeforeMEnd MBeforeLEnd UnknownFrame Garbled L INFO 2025-06-26 15:59:18,026 lopcToNetCDF.py unpackLOPCbin():969 [1] Count Count Count Error Error Error Error Error INFO 2025-06-26 15:59:18,026 lopcToNetCDF.py unpackLOPCbin():987 [1] -------- -------- -------- ----------- ----------- ----------- ----------- ------------ INFO 2025-06-26 15:59:22,640 lopcToNetCDF.py unpackLOPCbin():1013 [1] 10000 38459 10933 0 1 0 0 0 4.7 seconds, last L Frame: 127964 INFO 2025-06-26 15:59:27,918 lopcToNetCDF.py unpackLOPCbin():1013 [1] 20000 48459 23018 0 1 0 0 0 5.3 seconds, last L Frame: 127964 INFO 2025-06-26 15:59:33,890 lopcToNetCDF.py unpackLOPCbin():1013 [1] 30000 58459 37064 0 1 0 0 0 6.0 seconds, last L Frame: 127964 ERROR 2025-06-26 15:59:40,084 process.py download_process():223 [1] UnexpectedAreaOfCode: Encountered unexpected area of code - lopc.nc file is probably corrupt INFO 2025-06-26 15:59:40,087 process.py calibrate():227 [1] Calibration steps for 2010.261.00 INFO 2025-06-26 15:59:40,474 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-06-26 15:59:40,476 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-06-26 15:59:41,342 calibrate.py _nudge_pos():1806 [1] 124: 0.160 0.0033024 -0.0036819 9079 30.30 16.385 -22.519 2010-09-18T13:28:05.229604096 INFO 2025-06-26 15:59:41,896 calibrate.py _nudge_pos():1806 [1] 178: 0.160 0.0024213 -0.0046323 10983 36.61 9.942 -23.444 2010-09-18T14:05:35.235468032 INFO 2025-06-26 15:59:45,056 calibrate.py _nudge_pos():1806 [1] 489: 0.170 0.0036197 -0.0004579 9096 30.33 17.938 -2.797 2010-09-18T14:41:05.229553408 INFO 2025-06-26 15:59:45,591 calibrate.py _nudge_pos():1806 [1] 542: 0.170 0.0044315 -0.0045778 10146 33.83 19.693 -25.074 2010-09-18T15:15:47.236925952 INFO 2025-06-26 15:59:45,961 calibrate.py _nudge_pos():1806 [1] 578: 0.170 0.0036354 -0.0024800 6244 20.81 26.257 -22.079 2010-09-18T15:37:11.238966016 INFO 2025-06-26 15:59:45,992 calibrate.py _nudge_pos():1806 [1] 581: 0.170 0.0000065 0.0000410 120 0.40 2.445 19.174 2010-09-18T15:37:37.237185024 INFO 2025-06-26 15:59:49,209 calibrate.py _nudge_pos():1806 [1] 897: 0.170 0.0044116 -0.0030898 10263 34.21 19.383 -16.734 2010-09-18T16:17:05.234966016 INFO 2025-06-26 15:59:49,686 calibrate.py _nudge_pos():1806 [1] 943: 0.180 0.0045957 -0.0048363 6764 22.55 30.641 -39.747 2010-09-18T16:40:23.229196800 INFO 2025-06-26 15:59:49,789 calibrate.py _nudge_pos():1806 [1] 953: 0.170 -0.0000113 -0.0000011 55 0.18 -9.428 -1.094 2010-09-18T16:40:43.237826048 INFO 2025-06-26 16:00:05,670 calibrate.py _nudge_pos():1806 [1] 2469: 0.190 0.0049389 -0.0048248 9063 30.21 24.571 -29.591 2010-09-18T17:36:11.229843200 INFO 2025-06-26 16:00:06,328 calibrate.py _nudge_pos():1806 [1] 2529: 0.190 0.0042502 -0.0078477 11279 37.61 16.987 -38.661 2010-09-18T18:14:47.231186176 INFO 2025-06-26 16:00:06,898 calibrate.py _nudge_pos():1806 [1] 2582: 0.190 0.0043706 -0.0046199 6340 21.13 31.095 -40.514 2010-09-18T18:36:47.230759936 INFO 2025-06-26 16:00:12,462 calibrate.py _nudge_pos():1806 [1] 3071: 0.200 0.0040421 -0.0082692 9199 30.66 19.816 -49.971 2010-09-18T19:15:35.231281152 INFO 2025-06-26 16:00:12,995 calibrate.py _nudge_pos():1806 [1] 3121: 0.200 0.0022383 -0.0029495 7493 24.98 13.472 -21.882 2010-09-18T19:41:23.235235328 INFO 2025-06-26 16:00:13,386 calibrate.py _nudge_pos():1806 [1] 3157: 0.010 0.0003903 -0.0060020 6275 20.91 2.806 -53.180 2010-09-18T20:02:53.436850432 INFO 2025-06-26 16:00:15,012 calibrate.py _nudge_pos():1806 [1] 3306: 0.010 0.0023710 -0.0078526 8709 29.03 12.279 -50.123 2010-09-18T20:34:23.437376768 INFO 2025-06-26 16:00:15,593 calibrate.py _nudge_pos():1806 [1] 3358: 0.010 0.0037573 -0.0041959 8323 27.75 20.360 -28.022 2010-09-18T21:02:59.429823232 INFO 2025-06-26 16:00:16,187 calibrate.py _nudge_pos():1806 [1] 3411: 0.010 0.0000156 -0.0047083 4956 16.53 0.142 -52.779 2010-09-18T21:20:23.438303744 INFO 2025-06-26 16:00:31,604 calibrate.py _nudge_pos():1806 [1] 4778: 0.020 0.0041718 -0.0081318 8829 29.43 21.321 -51.200 2010-09-18T22:12:35.433747200 INFO 2025-06-26 16:00:32,324 calibrate.py _nudge_pos():1806 [1] 4834: 0.020 -0.0028539 -0.0044392 8273 27.58 -15.562 -29.825 2010-09-18T22:41:05.436603904 INFO 2025-06-26 16:00:32,900 calibrate.py _nudge_pos():1806 [1] 4881: 0.040 0.0045424 -0.0050896 11228 37.43 18.255 -25.197 2010-09-18T23:19:17.429591808 INFO 2025-06-26 16:00:42,188 calibrate.py _nudge_pos():1806 [1] 5601: 0.040 0.0047254 -0.0045021 7929 26.43 26.891 -31.564 2010-09-18T23:57:42.431688192 INFO 2025-06-26 16:00:42,298 calibrate.py _nudge_pos():1806 [1] 5610: 0.040 0.0000084 -0.0000121 56 0.18 6.859 -12.172 2010-09-18T23:58:01.650371840 INFO 2025-06-26 16:00:42,642 calibrate.py _nudge_pos():1806 [1] 5634: 0.050 0.0022050 -0.0055606 11632 38.78 8.553 -26.570 2010-09-19T00:37:11.429400832 INFO 2025-06-26 16:00:43,254 calibrate.py _nudge_pos():1806 [1] 5681: 0.050 -0.0000088 -0.0039610 6156 20.53 -0.065 -35.751 2010-09-19T00:58:29.431851520 INFO 2025-06-26 16:00:47,044 calibrate.py _nudge_pos():1806 [1] 5980: 0.060 0.0015685 -0.0071624 8888 29.63 7.964 -44.792 2010-09-19T01:33:05.429636096 INFO 2025-06-26 16:00:47,620 calibrate.py _nudge_pos():1806 [1] 6025: 0.060 -0.0019558 -0.0020207 8566 28.56 -10.299 -13.109 2010-09-19T02:02:23.429204992 INFO 2025-06-26 16:00:48,203 calibrate.py _nudge_pos():1806 [1] 6072: 0.060 0.0026862 -0.0027393 7509 25.03 16.146 -20.279 2010-09-19T02:28:11.433159424 INFO 2025-06-26 16:00:51,224 calibrate.py _nudge_pos():1806 [1] 6315: 0.060 -0.0010231 -0.0062277 8268 27.56 -5.585 -41.867 2010-09-19T02:59:47.433274624 INFO 2025-06-26 16:00:51,798 calibrate.py _nudge_pos():1806 [1] 6357: 0.060 0.0021611 -0.0037508 11430 38.11 8.530 -18.236 2010-09-19T03:38:35.433795328 INFO 2025-06-26 16:00:52,442 calibrate.py _nudge_pos():1806 [1] 6407: 0.060 0.0015331 -0.0010610 6084 20.28 11.373 -9.694 2010-09-19T03:59:41.437068288 INFO 2025-06-26 16:00:57,340 calibrate.py _nudge_pos():1806 [1] 6789: 0.070 0.0009312 -0.0047801 10725 35.75 3.919 -24.778 2010-09-19T04:41:47.434025728 INFO 2025-06-26 16:00:57,961 calibrate.py _nudge_pos():1806 [1] 6836: 0.070 0.0039006 -0.0056786 10448 34.83 16.850 -30.211 2010-09-19T05:17:23.437699328 INFO 2025-06-26 16:01:02,860 calibrate.py _nudge_pos():1806 [1] 7206: 0.080 -0.0002597 -0.0057063 10333 34.45 -1.134 -30.696 2010-09-19T05:57:59.430822400 INFO 2025-06-26 16:01:03,461 calibrate.py _nudge_pos():1806 [1] 7253: 0.080 0.0043457 -0.0057883 10538 35.13 18.615 -30.532 2010-09-19T06:33:53.433263104 INFO 2025-06-26 16:01:10,100 calibrate.py _nudge_pos():1862 [1] 7699: - - - 2 0.00 - - INFO 2025-06-26 16:01:10,100 calibrate.py _nudge_pos():1868 [1] Points in final series = 319312 WARNING 2025-06-26 16:01:10,702 calibrate.py _depth_process():2193 [1] Expected sample_rate to be 10 Hz, instead it's 8.33 Hz INFO 2025-06-26 16:01:45,133 calibrate.py _hs2_process():2400 [1] Number of bad hs2 points: 1 of 255743 INFO 2025-06-26 16:01:47,150 calibrate.py _geometric_depth_correction():3423 [1] hs2: d_beg_time_diff: 9 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 16:02:06,279 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 25 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 16:02:08,179 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 25 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 16:02:08,183 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2010.261.00/ctd1.nc INFO 2025-06-26 16:02:08,184 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd1_salinity values to NaN INFO 2025-06-26 16:02:08,185 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-06-26 16:02:08,185 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1 INFO 2025-06-26 16:02:22,552 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 25 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 16:02:24,497 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 25 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 16:02:24,501 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2010.261.00/ctd2.nc INFO 2025-06-26 16:02:24,503 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd2_salinity values to NaN INFO 2025-06-26 16:02:24,503 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-06-26 16:02:24,503 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2 ERROR 2025-06-26 16:02:24,548 calibrate.py process_logs():3542 [1] Error processing biolume: biolume has no orig_data - likely a missing or zero-sized .log file in missionlogs/2010.261.00 ERROR 2025-06-26 16:02:24,548 calibrate.py process_logs():3542 [1] Error processing lopc: lopc has no time coordinate - likely an incomplete lopc.nc file in missionlogs/2010.261.00 ERROR 2025-06-26 16:02:24,548 calibrate.py process_logs():3542 [1] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2010.261.00 INFO 2025-06-26 16:02:24,879 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2010.261.00/dorado_2010.261.00_cal.nc INFO 2025-06-26 16:02:53,087 calibrate.py write_netcdf():3512 [1] Data variables written: ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_salinity_onboard, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_salinity_onboard, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, hs2_bbp420, hs2_bbp700, hs2_depth, hs2_fl700, hs2_time, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, tailcone_propRpm, tailcone_time, time INFO 2025-06-26 16:02:53,094 process.py align():251 [1] Alignment steps for 2010.261.00 INFO 2025-06-26 16:02:53,136 align.py process_cal():139 [1] Processing dorado_2010.261.00_cal.nc from /data/auv_data/dorado/missionnetcdfs/2010.261.00 INFO 2025-06-26 16:02:53,220 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 16:02:53,229 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 16:02:53,440 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 16:02:53,453 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 16:02:53,653 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 16:02:53,665 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 16:02:53,796 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-06-26 16:02:53,796 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-06-26 16:02:53,877 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 16:02:53,889 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 16:02:54,091 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2010.261.00_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 16:02:54,103 align.py process_cal():249 [1] hs2_bbp420: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 16:02:54,278 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2010.261.00_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 16:02:54,288 align.py process_cal():249 [1] hs2_bbp700: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 16:02:54,465 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2010.261.00_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 16:02:54,475 align.py process_cal():249 [1] hs2_fl700: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 16:02:54,655 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.261.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 16:02:54,665 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 16:02:54,850 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.261.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 16:02:54,860 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 16:02:55,050 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.261.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 16:02:55,062 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 16:02:55,244 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.261.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 16:02:55,254 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 16:02:55,426 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.261.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 16:02:55,436 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 16:02:55,611 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.261.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 16:02:55,621 align.py process_cal():249 [1] ctd1_salinity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 16:02:55,801 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.261.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 16:02:55,811 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 16:02:55,987 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.261.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 16:02:55,997 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 16:02:56,169 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.261.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 16:02:56,179 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 16:02:56,355 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.261.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 16:02:56,365 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 16:02:56,587 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.261.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 16:02:56,599 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 16:02:56,784 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.261.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 16:02:56,794 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 16:02:56,964 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.261.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 16:02:56,976 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 16:02:57,149 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.261.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 16:02:57,159 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 16:02:57,330 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.261.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 16:02:57,340 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 16:02:57,512 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.261.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 16:02:57,523 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 16:02:57,697 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.261.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 16:02:57,707 align.py process_cal():249 [1] ctd2_salinity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 16:02:57,886 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.261.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 16:02:57,900 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 16:02:58,078 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.261.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 16:02:58,087 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 16:02:58,291 align.py process_cal():249 [1] isus_nitrate: instrument_sample_rate_hz = 0.78 INFO 2025-06-26 16:02:58,416 align.py process_cal():249 [1] isus_temp: instrument_sample_rate_hz = 0.78 INFO 2025-06-26 16:02:58,546 align.py process_cal():249 [1] isus_quality: instrument_sample_rate_hz = 0.78 INFO 2025-06-26 16:02:58,683 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 4.99 INFO 2025-06-26 16:02:58,823 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2010.261.00/dorado_2010.261.00_align.nc INFO 2025-06-26 16:02:58,990 align.py write_netcdf():342 [1] Data variables written: ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_salinity_onboard, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_salinity_onboard, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, hs2_bbp420, hs2_bbp700, hs2_depth, hs2_fl700, hs2_latitude, hs2_longitude, hs2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-06-26 16:02:58,993 process.py resample():273 [1] Resampling steps for 2010.261.00 INFO 2025-06-26 16:02:58,994 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-06-26 16:02:59,035 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2010.261.00/dorado_2010.261.00_align.nc mission netCDF file INFO 2025-06-26 16:02:59,044 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2010.261.00/dorado_2010.261.00_align.nc mission netCDF file INFO 2025-06-26 16:02:59,047 resample.py get_mission_start_end():1145 [1] navigation: 2010-09-18T12:56:35.869033984 to 2010-09-19T06:42:09.829257728 (0 days 00:00:00.139990272 before mission_end) INFO 2025-06-26 16:02:59,050 resample.py get_mission_start_end():1145 [1] hs2 : 2010-09-18T12:55:56.471732736 to 2010-09-19T06:42:09.689267456 (0 days 00:00:00.279980544 before mission_end) INFO 2025-06-26 16:02:59,053 resample.py get_mission_start_end():1145 [1] ctd1 : 2010-09-18T12:56:12.640625152 to 2010-09-19T06:42:09.809259264 (0 days 00:00:00.159988736 before mission_end) INFO 2025-06-26 16:02:59,055 resample.py get_mission_start_end():1145 [1] ctd2 : 2010-09-18T12:56:12.630626048 to 2010-09-19T06:42:09.969248000 (0 days 00:00:00 before mission_end) INFO 2025-06-26 16:02:59,057 resample.py get_mission_start_end():1145 [1] isus : 2010-09-18T12:57:05.337015296 to 2010-09-19T06:42:08.889321984 (0 days 00:00:01.079926016 before mission_end) INFO 2025-06-26 16:02:59,060 resample.py get_mission_start_end():1145 [1] tailcone : 2010-09-18T12:55:47.582341888 to 2010-09-19T06:42:09.789260288 (0 days 00:00:00.179987712 before mission_end) INFO 2025-06-26 16:02:59,061 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2010.261.00/dorado_2010.261.00_align.nc mission netCDF file INFO 2025-06-26 16:02:59,062 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-06-26 16:02:59,704 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-06-26 16:02:59,811 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-06-26 16:02:59,914 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-06-26 16:03:00,022 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 16:03:00,114 resample.py resample_variable():1031 [1] Resampling hs2_bbp420 with frequency 1S following 3 point median filter INFO 2025-06-26 16:03:00,200 resample.py resample_variable():1031 [1] Resampling hs2_bbp700 with frequency 1S following 3 point median filter INFO 2025-06-26 16:03:00,287 resample.py resample_variable():1031 [1] Resampling hs2_fl700 with frequency 1S following 3 point median filter INFO 2025-06-26 16:03:00,372 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 16:03:00,452 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 16:03:00,531 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 16:03:00,610 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 16:03:00,690 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 16:03:00,770 resample.py resample_variable():1031 [1] Resampling ctd1_salinity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 16:03:00,850 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-06-26 16:03:00,931 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-06-26 16:03:01,011 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-06-26 16:03:01,091 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-06-26 16:03:01,176 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 16:03:01,260 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 16:03:01,345 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 16:03:01,429 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 16:03:01,513 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 16:03:01,598 resample.py resample_variable():1031 [1] Resampling ctd2_salinity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 16:03:01,682 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-06-26 16:03:01,715 resample.py resample_variable():1031 [1] Resampling isus_nitrate with frequency 1S following 3 point median filter INFO 2025-06-26 16:03:01,746 resample.py resample_variable():1031 [1] Resampling isus_temp with frequency 1S following 3 point median filter INFO 2025-06-26 16:03:01,774 resample.py resample_variable():1031 [1] Resampling isus_quality with frequency 1S following 3 point median filter INFO 2025-06-26 16:03:01,873 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-06-26 16:03:02,345 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2010.261.00/dorado_2010.261.00_1S.nc INFO 2025-06-26 16:03:05,244 create_products.py gulper_odv():401 [1] No gulper times found for 2010.261.00 INFO 2025-06-26 16:03:05,244 process.py archive():337 [1] Archiving steps for 2010.261.00 INFO 2025-06-26 16:03:05,244 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2010.261.00/dorado_2010.261.00, BASE_PATH = /data/auv_data INFO 2025-06-26 16:03:05,246 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2010.261.00/dorado_2010.261.00 files to /Volumes/AUVCTD/surveys/2010/netcdf INFO 2025-06-26 16:03:05,248 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2010/netcdf/dorado_2010.261.00_1S.nc INFO 2025-06-26 16:03:05,295 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.261.00/dorado_2010.261.00_1S.nc /Volumes/AUVCTD/surveys/2010/netcdf done. INFO 2025-06-26 16:03:05,296 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2010/netcdf/dorado_2010.261.00_cal.nc INFO 2025-06-26 16:03:05,549 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.261.00/dorado_2010.261.00_cal.nc /Volumes/AUVCTD/surveys/2010/netcdf done. INFO 2025-06-26 16:03:05,550 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2010/netcdf/dorado_2010.261.00_align.nc INFO 2025-06-26 16:03:05,792 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.261.00/dorado_2010.261.00_align.nc /Volumes/AUVCTD/surveys/2010/netcdf done. INFO 2025-06-26 16:03:05,864 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.261.00/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010261/2010.261.00 done. INFO 2025-06-26 16:03:05,933 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.261.00/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010261/2010.261.00 done. INFO 2025-06-26 16:03:05,940 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.261.00/gps.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010261/2010.261.00 done. INFO 2025-06-26 16:03:05,999 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.261.00/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010261/2010.261.00 done. INFO 2025-06-26 16:03:06,193 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.261.00/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010261/2010.261.00 done. INFO 2025-06-26 16:03:06,204 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.261.00/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010261/2010.261.00 done. INFO 2025-06-26 16:03:06,276 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.261.00/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010261/2010.261.00 done. INFO 2025-06-26 16:03:06,330 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.261.00/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010261/2010.261.00 done. INFO 2025-06-26 16:03:06,394 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.261.00/lopc.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010261/2010.261.00 done. INFO 2025-06-26 16:03:06,395 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-06-26 16:03:06,395 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.261.00/dorado_2010.261.00_processing.log /Volumes/AUVCTD/surveys/2010/netcdf