INFO 2025-06-26 15:52:37,277 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2005 --end_year 2014 --num_cores 1 -v --noinput --clobber INFO 2025-06-26 15:52:37,277 process.py process_mission():434 [1] dorado_info[mission]["comment"] = ESP drifter missions out at station 67-70 with Flyer doing casts and ESP drifting south toward Davidson Seamount - no gulpers (Frederic sent me note about survey grouping) Faulty parosci lead to several mission depth aborts at beginning of this set of volume surveys - ctdToUse = ctd1 INFO 2025-06-26 15:52:37,277 process.py process_mission():449 [1] Processing AUVCTD mission 2010.259.03 by user docker_user on host eae60d30a712 INFO 2025-06-26 15:52:37,277 process.py download_process():165 [1] Download and processing steps for 2010.259.03 INFO 2025-06-26 15:52:37,277 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2010/2010259/2010.259.03 INFO 2025-06-26 15:52:37,278 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2010/2010259/2010.259.03 to /data/auv_data/dorado/missionlogs/2010.259.03 INFO 2025-06-26 15:52:42,720 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2010.259.03 INFO 2025-06-26 15:52:42,720 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.259.03/ctdDriver.log (21995243 bytes) INFO 2025-06-26 15:52:44,311 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/dorado/missionlogs/2010.259.03/ctdDriver.log: [38820 45390] INFO 2025-06-26 15:52:44,379 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.259.03/ctdDriver2.log (21994655 bytes) INFO 2025-06-26 15:52:45,933 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/dorado/missionlogs/2010.259.03/ctdDriver2.log: [ 45384 148038] INFO 2025-06-26 15:52:46,004 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.259.03/gps.log (311540 bytes) INFO 2025-06-26 15:52:46,046 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.259.03/hydroscatlog.log (19242322 bytes) INFO 2025-06-26 15:52:47,989 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/dorado/missionlogs/2010.259.03/hydroscatlog.log: [ 27155 103496] INFO 2025-06-26 15:52:48,045 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.259.03/navigation.log (67549226 bytes) INFO 2025-06-26 15:52:53,163 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.259.03/isuslog.log (1421909 bytes) INFO 2025-06-26 15:52:53,305 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.259.03/parosci.log (22375958 bytes) INFO 2025-06-26 15:52:55,303 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.259.03/tailCone.log (13731739 bytes) INFO 2025-06-26 15:52:56,993 logs2netcdfs.py download_process_logs():807 [1] Time to process: 14.27 seconds INFO 2025-06-26 15:52:56,994 process.py download_process():198 [1] Processing file /data/auv_data/dorado/missionlogs/2010.259.03/lopc.bin (47692000 bytes) INFO 2025-06-26 15:52:56,994 lopcToNetCDF.py main():2297 [1] Processing begun: Thu Jun 26 15:52:56 2025 INFO 2025-06-26 15:52:56,994 lopcToNetCDF.py constructTimestampList():1296 [1] parosci_nc = /data/auv_data/dorado/missionnetcdfs/2010.259.03/parosci.nc INFO 2025-06-26 15:52:56,994 lopcToNetCDF.py constructTimestampList():1297 [1] Using NetCDF4 to get start and end epoch seconds for this mission from this URL: INFO 2025-06-26 15:52:56,994 lopcToNetCDF.py constructTimestampList():1300 [1] /data/auv_data/dorado/missionnetcdfs/2010.259.03/parosci.nc INFO 2025-06-26 15:52:56,998 lopcToNetCDF.py constructTimestampList():1317 [1] From associated parosci.nc file: sensor_on_time = 1284673358.5, sensor_off_time = 1284730661.2 INFO 2025-06-26 15:52:56,998 lopcToNetCDF.py constructTimestampList():1322 [1] Duration is 57302 seconds. Expecting to read 114604 L frames from the lopc.bin file. INFO 2025-06-26 15:52:56,998 lopcToNetCDF.py constructTimestampList():1330 [1] recCount not passed in, assuming we'll have 114604 records from the lopc.bin file. INFO 2025-06-26 15:52:57,680 lopcToNetCDF.py main():2321 [1] Examined sibling parosci.nc file to find startTime = 2010-09-16 21:42:38 Z and endTime = 2010-09-17 13:37:41 Z with 114604 records expected to be read from lopc.bin INFO 2025-06-26 15:52:57,680 lopcToNetCDF.py unpackLOPCbin():723 [1] >>> Unpacking LOPC data from /data/auv_data/dorado/missionlogs/2010.259.03/lopc.bin INFO 2025-06-26 15:52:57,680 lopcToNetCDF.py unpackLOPCbin():724 [1] >>> Will write to NetCDF file /data/auv_data/dorado/missionnetcdfs/2010.259.03/lopc.nc INFO 2025-06-26 15:52:57,681 lopcToNetCDF.py openNetCDFFile():1861 [1] Will output NetCDF file to /data/auv_data/dorado/missionnetcdfs/2010.259.03/lopc.nc INFO 2025-06-26 15:52:57,682 lopcToNetCDF.py openNetCDFFile():1887 [1] missionName = 2010.259.03 INFO 2025-06-26 15:52:57,682 lopcToNetCDF.py openNetCDFFile():1910 [1] Writing bin axis for len(self.dataStructure['binSizeList']) = 994 WARNING 2025-06-26 15:52:57,685 lopcToNetCDF.py readCframeData():665 [1] Unable to parse a float from the string cstr[:70] = A0477503 WARNING 2025-06-26 15:52:57,685 lopcToNetCDF.py readCframeData():665 [1] Unable to parse a float from the string cstr[:70] = INFO 2025-06-26 15:52:57,754 lopcToNetCDF.py unpackLOPCbin():951 [1] L Frames sample M Frames ShortLFrame LBeforeMEnd MBeforeLEnd UnknownFrame Garbled L INFO 2025-06-26 15:52:57,754 lopcToNetCDF.py unpackLOPCbin():969 [1] Count Count Count Error Error Error Error Error INFO 2025-06-26 15:52:57,754 lopcToNetCDF.py unpackLOPCbin():987 [1] -------- -------- -------- ----------- ----------- ----------- ----------- ------------ INFO 2025-06-26 15:53:03,731 lopcToNetCDF.py unpackLOPCbin():1013 [1] 10000 18223 15737 1 0 0 0 0 6.1 seconds, last L Frame: 114604 INFO 2025-06-26 15:53:10,117 lopcToNetCDF.py unpackLOPCbin():1013 [1] 20000 28223 32527 1 0 0 0 0 6.4 seconds, last L Frame: 114604 INFO 2025-06-26 15:53:15,622 lopcToNetCDF.py unpackLOPCbin():1013 [1] 30000 38224 46080 2 0 0 0 0 5.5 seconds, last L Frame: 114604 INFO 2025-06-26 15:53:20,602 lopcToNetCDF.py unpackLOPCbin():1013 [1] 40000 48224 58442 2 0 0 0 0 5.0 seconds, last L Frame: 114604 INFO 2025-06-26 15:53:25,447 lopcToNetCDF.py unpackLOPCbin():1013 [1] 50000 58224 70259 2 0 0 0 0 4.8 seconds, last L Frame: 114604 ERROR 2025-06-26 15:53:28,046 process.py download_process():223 [1] UnexpectedAreaOfCode: Encountered unexpected area of code - lopc.nc file is probably corrupt INFO 2025-06-26 15:53:28,049 process.py calibrate():227 [1] Calibration steps for 2010.259.03 INFO 2025-06-26 15:53:28,478 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-06-26 15:53:28,480 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-06-26 15:53:29,188 calibrate.py _nudge_pos():1806 [1] 108: 0.080 0.0000339 -0.0000316 20 0.06 80.254 -92.604 2010-09-16T21:44:27.007023360 INFO 2025-06-26 15:53:29,209 calibrate.py _nudge_pos():1806 [1] 110: 0.080 0.0049921 -0.0038225 8877 29.61 25.259 -23.919 2010-09-16T22:14:05.005222144 INFO 2025-06-26 15:53:29,902 calibrate.py _nudge_pos():1806 [1] 180: 0.090 0.0019547 -0.0040393 10752 35.85 8.171 -20.880 2010-09-16T22:51:05.003141888 INFO 2025-06-26 15:53:30,353 calibrate.py _nudge_pos():1806 [1] 225: 0.100 0.0002461 -0.0019796 4938 16.46 2.240 -22.281 2010-09-16T23:08:17.002445056 INFO 2025-06-26 15:53:32,037 calibrate.py _nudge_pos():1806 [1] 392: 0.090 0.0014530 -0.0033722 3069 10.23 21.285 -61.081 2010-09-16T23:21:17.009010944 INFO 2025-06-26 15:53:32,455 calibrate.py _nudge_pos():1806 [1] 432: 0.100 0.0029085 -0.0033481 9193 30.65 14.221 -20.244 2010-09-16T23:52:35.000359680 INFO 2025-06-26 15:53:32,794 calibrate.py _nudge_pos():1806 [1] 466: 0.100 0.0023579 -0.0034665 9524 31.75 11.132 -20.233 2010-09-17T00:24:53.007597312 INFO 2025-06-26 15:53:36,389 calibrate.py _nudge_pos():1806 [1] 820: 0.100 0.0028289 -0.0055779 9092 30.31 13.986 -34.097 2010-09-17T01:01:05.008804864 INFO 2025-06-26 15:53:36,983 calibrate.py _nudge_pos():1806 [1] 877: 0.110 0.0036602 -0.0016091 6769 22.56 24.314 -13.215 2010-09-17T01:24:35.002213632 INFO 2025-06-26 15:53:37,480 calibrate.py _nudge_pos():1806 [1] 925: 0.100 -0.0003741 -0.0023865 6753 22.51 -2.491 -19.642 2010-09-17T01:47:53.006443776 INFO 2025-06-26 15:53:39,729 calibrate.py _nudge_pos():1806 [1] 1144: 0.110 0.0000071 -0.0000039 15 0.05 22.813 -15.502 2010-09-17T01:51:34.001304576 INFO 2025-06-26 15:53:41,672 calibrate.py _nudge_pos():1806 [1] 1332: 0.100 0.0009147 -0.0052361 9539 31.80 4.312 -30.514 2010-09-17T02:26:29.007786752 INFO 2025-06-26 15:53:42,096 calibrate.py _nudge_pos():1806 [1] 1373: 0.120 0.0052289 -0.0028148 11198 37.33 21.001 -13.972 2010-09-17T03:04:29.001596672 INFO 2025-06-26 15:53:43,527 calibrate.py _nudge_pos():1806 [1] 1513: 0.110 0.0000113 -0.0000028 15 0.05 36.353 -11.287 2010-09-17T03:06:51.001869056 INFO 2025-06-26 15:53:43,964 calibrate.py _nudge_pos():1806 [1] 1555: 0.110 0.0012927 -0.0054112 9494 31.65 6.124 -31.684 2010-09-17T03:39:11.008969216 INFO 2025-06-26 15:53:44,725 calibrate.py _nudge_pos():1806 [1] 1629: 0.120 0.0049906 -0.0040263 11117 37.06 20.191 -20.130 2010-09-17T04:17:29.001546240 INFO 2025-06-26 15:53:47,137 calibrate.py _nudge_pos():1806 [1] 1860: 0.120 0.0008030 -0.0067218 9497 31.66 3.803 -39.338 2010-09-17T04:52:59.005630720 INFO 2025-06-26 15:53:47,556 calibrate.py _nudge_pos():1806 [1] 1899: 0.120 0.0000036 0.0000047 15 0.05 11.570 18.654 2010-09-17T04:53:40.002822144 INFO 2025-06-26 15:53:47,601 calibrate.py _nudge_pos():1806 [1] 1903: 0.120 0.0045045 -0.0041965 8419 28.06 24.070 -27.709 2010-09-17T05:21:47.007254528 INFO 2025-06-26 15:53:48,103 calibrate.py _nudge_pos():1806 [1] 1952: 0.130 0.0000502 -0.0009659 2700 9.00 0.837 -19.894 2010-09-17T05:31:35.006973696 INFO 2025-06-26 15:53:49,425 calibrate.py _nudge_pos():1806 [1] 2080: 0.120 0.0025432 -0.0051967 5844 19.48 19.580 -49.433 2010-09-17T05:53:11.008191488 INFO 2025-06-26 15:53:49,848 calibrate.py _nudge_pos():1806 [1] 2121: 0.130 0.0000193 -0.0000302 30 0.10 29.876 -57.856 2010-09-17T05:53:57.005040640 INFO 2025-06-26 15:53:49,870 calibrate.py _nudge_pos():1806 [1] 2123: 0.130 0.0026051 -0.0063127 11704 39.01 10.015 -29.983 2010-09-17T06:32:59.004602624 INFO 2025-06-26 15:53:50,288 calibrate.py _nudge_pos():1806 [1] 2163: 0.130 -0.0006160 -0.0022304 3163 10.55 -8.761 -39.186 2010-09-17T06:44:11.008567296 INFO 2025-06-26 15:53:53,477 calibrate.py _nudge_pos():1806 [1] 2465: 0.130 0.0015866 -0.0009986 3915 13.05 18.242 -14.183 2010-09-17T07:02:17.004171264 INFO 2025-06-26 15:53:54,220 calibrate.py _nudge_pos():1806 [1] 2534: 0.130 0.0010260 -0.0051743 6919 23.06 6.673 -41.573 2010-09-17T07:26:29.004702464 INFO 2025-06-26 15:53:54,709 calibrate.py _nudge_pos():1806 [1] 2581: 0.130 0.0039361 -0.0052217 11139 37.13 15.904 -26.059 2010-09-17T08:04:23.008922624 INFO 2025-06-26 15:53:56,204 calibrate.py _nudge_pos():1806 [1] 2724: 0.140 0.0007003 -0.0063902 9038 30.13 3.487 -39.300 2010-09-17T08:36:53.005338624 INFO 2025-06-26 15:53:56,593 calibrate.py _nudge_pos():1806 [1] 2761: 0.140 0.0038776 -0.0039449 11605 38.68 15.041 -18.898 2010-09-17T09:16:10.003873280 INFO 2025-06-26 15:53:58,677 calibrate.py _nudge_pos():1806 [1] 2956: 0.150 0.0026459 -0.0057252 9144 30.48 13.024 -34.806 2010-09-17T09:49:54.005219584 INFO 2025-06-26 15:53:59,426 calibrate.py _nudge_pos():1806 [1] 3026: 0.150 0.0038590 -0.0032676 11409 38.03 15.227 -15.921 2010-09-17T10:29:05.004165120 INFO 2025-06-26 15:54:01,293 calibrate.py _nudge_pos():1806 [1] 3199: 0.150 0.0000125 -0.0000077 30 0.10 19.425 -14.799 2010-09-17T10:32:03.001971456 INFO 2025-06-26 15:54:08,109 calibrate.py _nudge_pos():1806 [1] 3827: 0.150 0.0026264 -0.0049785 9984 33.28 11.841 -27.720 2010-09-17T11:15:47.002215168 INFO 2025-06-26 15:54:08,639 calibrate.py _nudge_pos():1806 [1] 3875: 0.150 0.0022750 -0.0032546 10354 34.51 9.892 -17.474 2010-09-17T11:51:05.007121920 INFO 2025-06-26 15:54:10,170 calibrate.py _nudge_pos():1806 [1] 4014: 0.160 0.0028046 -0.0050848 10619 35.40 11.889 -26.619 2010-09-17T12:28:47.002164480 INFO 2025-06-26 15:54:10,744 calibrate.py _nudge_pos():1806 [1] 4065: 0.160 0.0018324 -0.0033540 10848 36.16 7.604 -17.186 2010-09-17T13:05:47.000084480 INFO 2025-06-26 15:54:12,297 calibrate.py _nudge_pos():1806 [1] 4206: 0.160 0.0039946 -0.0022731 8328 27.76 21.591 -15.171 2010-09-17T13:35:53.006364672 INFO 2025-06-26 15:54:13,490 calibrate.py _nudge_pos():1862 [1] 4265: - - - 1 0.00 - - INFO 2025-06-26 15:54:13,491 calibrate.py _nudge_pos():1868 [1] Points in final series = 286208 WARNING 2025-06-26 15:54:13,843 calibrate.py _depth_process():2193 [1] Expected sample_rate to be 10 Hz, instead it's 8.33 Hz INFO 2025-06-26 15:54:44,503 calibrate.py _geometric_depth_correction():3423 [1] hs2: d_beg_time_diff: 8 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 15:55:01,083 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 26 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 15:55:02,870 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 26 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 15:55:02,873 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2010.259.03/ctd1.nc INFO 2025-06-26 15:55:02,875 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd1_salinity values to NaN INFO 2025-06-26 15:55:02,875 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-06-26 15:55:02,875 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1 INFO 2025-06-26 15:55:15,442 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 28 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 15:55:17,181 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 28 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 15:55:17,185 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2010.259.03/ctd2.nc INFO 2025-06-26 15:55:17,186 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd2_salinity values to NaN INFO 2025-06-26 15:55:17,187 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-06-26 15:55:17,187 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2 ERROR 2025-06-26 15:55:17,229 calibrate.py process_logs():3542 [1] Error processing biolume: biolume has no orig_data - likely a missing or zero-sized .log file in missionlogs/2010.259.03 ERROR 2025-06-26 15:55:17,229 calibrate.py process_logs():3542 [1] Error processing lopc: lopc has no time coordinate - likely an incomplete lopc.nc file in missionlogs/2010.259.03 ERROR 2025-06-26 15:55:17,229 calibrate.py process_logs():3542 [1] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2010.259.03 INFO 2025-06-26 15:55:17,517 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2010.259.03/dorado_2010.259.03_cal.nc INFO 2025-06-26 15:55:42,440 calibrate.py write_netcdf():3512 [1] Data variables written: ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_salinity_onboard, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_salinity_onboard, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, hs2_bbp420, hs2_bbp700, hs2_depth, hs2_fl700, hs2_time, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, tailcone_propRpm, tailcone_time, time INFO 2025-06-26 15:55:42,447 process.py align():251 [1] Alignment steps for 2010.259.03 INFO 2025-06-26 15:55:42,485 align.py process_cal():139 [1] Processing dorado_2010.259.03_cal.nc from /data/auv_data/dorado/missionnetcdfs/2010.259.03 INFO 2025-06-26 15:55:42,562 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 15:55:42,570 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 15:55:42,769 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 15:55:42,781 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 15:55:42,961 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 15:55:42,972 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 15:55:43,086 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-06-26 15:55:43,086 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-06-26 15:55:43,163 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 15:55:43,175 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 15:55:43,350 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2010.259.03_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:55:43,360 align.py process_cal():249 [1] hs2_bbp420: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:55:43,512 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2010.259.03_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:55:43,520 align.py process_cal():249 [1] hs2_bbp700: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:55:43,673 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2010.259.03_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:55:43,682 align.py process_cal():249 [1] hs2_fl700: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:55:43,836 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.259.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:55:43,845 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:55:44,006 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.259.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:55:44,016 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:55:44,172 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.259.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:55:44,188 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:55:44,343 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.259.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:55:44,352 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:55:44,504 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.259.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:55:44,513 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:55:44,666 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.259.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:55:44,675 align.py process_cal():249 [1] ctd1_salinity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:55:44,828 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.259.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:55:44,836 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:55:44,994 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.259.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:55:45,003 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:55:45,157 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.259.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:55:45,166 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:55:45,321 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.259.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:55:45,329 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:55:45,488 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.259.03_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:55:45,496 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:55:45,653 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.259.03_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:55:45,662 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:55:45,823 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.259.03_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:55:45,833 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:55:45,992 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.259.03_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:55:46,001 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:55:46,157 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.259.03_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:55:46,166 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:55:46,324 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.259.03_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:55:46,333 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:55:46,488 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.259.03_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:55:46,497 align.py process_cal():249 [1] ctd2_salinity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:55:46,657 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.259.03_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:55:46,667 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:55:46,820 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.259.03_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:55:46,828 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:55:47,015 align.py process_cal():249 [1] isus_nitrate: instrument_sample_rate_hz = 0.78 INFO 2025-06-26 15:55:47,130 align.py process_cal():249 [1] isus_temp: instrument_sample_rate_hz = 0.78 INFO 2025-06-26 15:55:47,247 align.py process_cal():249 [1] isus_quality: instrument_sample_rate_hz = 0.78 INFO 2025-06-26 15:55:47,369 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 4.99 INFO 2025-06-26 15:55:47,486 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2010.259.03/dorado_2010.259.03_align.nc INFO 2025-06-26 15:55:47,626 align.py write_netcdf():342 [1] Data variables written: ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_salinity_onboard, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_salinity_onboard, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, hs2_bbp420, hs2_bbp700, hs2_depth, hs2_fl700, hs2_latitude, hs2_longitude, hs2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-06-26 15:55:47,629 process.py resample():273 [1] Resampling steps for 2010.259.03 INFO 2025-06-26 15:55:47,629 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-06-26 15:55:47,660 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2010.259.03/dorado_2010.259.03_align.nc mission netCDF file INFO 2025-06-26 15:55:47,668 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2010.259.03/dorado_2010.259.03_align.nc mission netCDF file INFO 2025-06-26 15:55:47,670 resample.py get_mission_start_end():1145 [1] navigation: 2010-09-16T21:43:26.401175040 to 2010-09-17T13:37:41.208952064 (0 days 00:00:00.029997824 before mission_end) INFO 2025-06-26 15:55:47,673 resample.py get_mission_start_end():1145 [1] hs2 : 2010-09-16T21:42:47.393847296 to 2010-09-17T13:37:41.158955520 (0 days 00:00:00.079994368 before mission_end) INFO 2025-06-26 15:55:47,676 resample.py get_mission_start_end():1145 [1] ctd1 : 2010-09-16T21:43:05.212626688 to 2010-09-17T13:37:41.238949888 (0 days 00:00:00 before mission_end) INFO 2025-06-26 15:55:47,678 resample.py get_mission_start_end():1145 [1] ctd2 : 2010-09-16T21:43:06.782519040 to 2010-09-17T13:37:41.228950784 (0 days 00:00:00.009999104 before mission_end) INFO 2025-06-26 15:55:47,680 resample.py get_mission_start_end():1145 [1] isus : 2010-09-16T21:43:55.299195648 to 2010-09-17T13:37:40.548997376 (0 days 00:00:00.689952512 before mission_end) INFO 2025-06-26 15:55:47,682 resample.py get_mission_start_end():1145 [1] tailcone : 2010-09-16T21:42:40.814297856 to 2010-09-17T13:37:41.218951424 (0 days 00:00:00.019998464 before mission_end) INFO 2025-06-26 15:55:47,683 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2010.259.03/dorado_2010.259.03_align.nc mission netCDF file INFO 2025-06-26 15:55:47,684 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-06-26 15:55:48,271 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-06-26 15:55:48,365 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-06-26 15:55:48,461 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-06-26 15:55:48,552 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 15:55:48,630 resample.py resample_variable():1031 [1] Resampling hs2_bbp420 with frequency 1S following 3 point median filter INFO 2025-06-26 15:55:48,707 resample.py resample_variable():1031 [1] Resampling hs2_bbp700 with frequency 1S following 3 point median filter INFO 2025-06-26 15:55:48,783 resample.py resample_variable():1031 [1] Resampling hs2_fl700 with frequency 1S following 3 point median filter INFO 2025-06-26 15:55:48,860 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 15:55:48,932 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 15:55:49,010 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 15:55:49,084 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 15:55:49,156 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 15:55:49,227 resample.py resample_variable():1031 [1] Resampling ctd1_salinity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 15:55:49,299 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-06-26 15:55:49,371 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-06-26 15:55:49,442 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-06-26 15:55:49,514 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-06-26 15:55:49,590 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 15:55:49,667 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 15:55:49,742 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 15:55:49,817 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 15:55:49,892 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 15:55:49,967 resample.py resample_variable():1031 [1] Resampling ctd2_salinity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 15:55:50,043 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-06-26 15:55:50,075 resample.py resample_variable():1031 [1] Resampling isus_nitrate with frequency 1S following 3 point median filter INFO 2025-06-26 15:55:50,100 resample.py resample_variable():1031 [1] Resampling isus_temp with frequency 1S following 3 point median filter INFO 2025-06-26 15:55:50,123 resample.py resample_variable():1031 [1] Resampling isus_quality with frequency 1S following 3 point median filter INFO 2025-06-26 15:55:50,207 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-06-26 15:55:50,636 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2010.259.03/dorado_2010.259.03_1S.nc INFO 2025-06-26 15:55:52,388 create_products.py gulper_odv():401 [1] No gulper times found for 2010.259.03 INFO 2025-06-26 15:55:52,388 process.py archive():337 [1] Archiving steps for 2010.259.03 INFO 2025-06-26 15:55:52,388 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2010.259.03/dorado_2010.259.03, BASE_PATH = /data/auv_data INFO 2025-06-26 15:55:52,389 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2010.259.03/dorado_2010.259.03 files to /Volumes/AUVCTD/surveys/2010/netcdf INFO 2025-06-26 15:55:52,390 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2010/netcdf/dorado_2010.259.03_1S.nc INFO 2025-06-26 15:55:52,431 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.259.03/dorado_2010.259.03_1S.nc /Volumes/AUVCTD/surveys/2010/netcdf done. INFO 2025-06-26 15:55:52,432 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2010/netcdf/dorado_2010.259.03_cal.nc INFO 2025-06-26 15:55:52,649 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.259.03/dorado_2010.259.03_cal.nc /Volumes/AUVCTD/surveys/2010/netcdf done. INFO 2025-06-26 15:55:52,650 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2010/netcdf/dorado_2010.259.03_align.nc INFO 2025-06-26 15:55:52,858 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.259.03/dorado_2010.259.03_align.nc /Volumes/AUVCTD/surveys/2010/netcdf done. INFO 2025-06-26 15:55:52,920 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.259.03/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010259/2010.259.03 done. INFO 2025-06-26 15:55:52,980 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.259.03/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010259/2010.259.03 done. INFO 2025-06-26 15:55:52,985 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.259.03/gps.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010259/2010.259.03 done. INFO 2025-06-26 15:55:53,040 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.259.03/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010259/2010.259.03 done. INFO 2025-06-26 15:55:53,203 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.259.03/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010259/2010.259.03 done. INFO 2025-06-26 15:55:53,213 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.259.03/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010259/2010.259.03 done. INFO 2025-06-26 15:55:53,278 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.259.03/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010259/2010.259.03 done. INFO 2025-06-26 15:55:53,323 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.259.03/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010259/2010.259.03 done. INFO 2025-06-26 15:55:53,413 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.259.03/lopc.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010259/2010.259.03 done. INFO 2025-06-26 15:55:53,414 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-06-26 15:55:53,414 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.259.03/dorado_2010.259.03_processing.log /Volumes/AUVCTD/surveys/2010/netcdf