INFO 2025-06-26 15:52:14,548 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2005 --end_year 2014 --num_cores 1 -v --noinput --clobber INFO 2025-06-26 15:52:14,549 process.py process_mission():434 [1] dorado_info[mission]["comment"] = ESP drifter missions out at station 67-70 with Flyer doing casts and ESP drifting south toward Davidson Seamount - no gulpers (Frederic sent me note about survey grouping) Faulty parosci lead to several mission depth aborts at beginning of this set of volume surveys - ctdToUse = ctd1 INFO 2025-06-26 15:52:14,549 process.py process_mission():449 [1] Processing AUVCTD mission 2010.259.01 by user docker_user on host eae60d30a712 INFO 2025-06-26 15:52:14,549 process.py download_process():165 [1] Download and processing steps for 2010.259.01 INFO 2025-06-26 15:52:14,549 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2010/2010259/2010.259.01 INFO 2025-06-26 15:52:14,549 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2010/2010259/2010.259.01 to /data/auv_data/dorado/missionlogs/2010.259.01 INFO 2025-06-26 15:52:15,457 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2010.259.01 INFO 2025-06-26 15:52:15,457 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.259.01/ctdDriver.log (1093067 bytes) INFO 2025-06-26 15:52:15,539 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/dorado/missionlogs/2010.259.01/ctdDriver.log: [3457] INFO 2025-06-26 15:52:15,542 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.259.01/ctdDriver2.log (1091711 bytes) INFO 2025-06-26 15:52:15,627 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/dorado/missionlogs/2010.259.01/ctdDriver2.log: [3443] INFO 2025-06-26 15:52:15,630 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.259.01/gps.log (18788 bytes) INFO 2025-06-26 15:52:15,640 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.259.01/hydroscatlog.log (961906 bytes) INFO 2025-06-26 15:52:15,745 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.259.01/navigation.log (3332446 bytes) INFO 2025-06-26 15:52:15,990 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.259.01/isuslog.log (69589 bytes) INFO 2025-06-26 15:52:16,002 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.259.01/parosci.log (981638 bytes) INFO 2025-06-26 15:52:16,102 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.259.01/tailCone.log (687019 bytes) INFO 2025-06-26 15:52:16,192 logs2netcdfs.py download_process_logs():807 [1] Time to process: 0.74 seconds INFO 2025-06-26 15:52:16,193 process.py download_process():198 [1] Processing file /data/auv_data/dorado/missionlogs/2010.259.01/lopc.bin (2993000 bytes) INFO 2025-06-26 15:52:16,193 lopcToNetCDF.py main():2297 [1] Processing begun: Thu Jun 26 15:52:16 2025 INFO 2025-06-26 15:52:16,193 lopcToNetCDF.py constructTimestampList():1296 [1] parosci_nc = /data/auv_data/dorado/missionnetcdfs/2010.259.01/parosci.nc INFO 2025-06-26 15:52:16,193 lopcToNetCDF.py constructTimestampList():1297 [1] Using NetCDF4 to get start and end epoch seconds for this mission from this URL: INFO 2025-06-26 15:52:16,193 lopcToNetCDF.py constructTimestampList():1300 [1] /data/auv_data/dorado/missionnetcdfs/2010.259.01/parosci.nc INFO 2025-06-26 15:52:16,195 lopcToNetCDF.py constructTimestampList():1317 [1] From associated parosci.nc file: sensor_on_time = 1284665951.9, sensor_off_time = 1284668784.4 INFO 2025-06-26 15:52:16,195 lopcToNetCDF.py constructTimestampList():1322 [1] Duration is 2832 seconds. Expecting to read 5664 L frames from the lopc.bin file. INFO 2025-06-26 15:52:16,195 lopcToNetCDF.py constructTimestampList():1330 [1] recCount not passed in, assuming we'll have 5664 records from the lopc.bin file. INFO 2025-06-26 15:52:16,229 lopcToNetCDF.py main():2321 [1] Examined sibling parosci.nc file to find startTime = 2010-09-16 19:39:11 Z and endTime = 2010-09-16 20:26:24 Z with 5664 records expected to be read from lopc.bin INFO 2025-06-26 15:52:16,229 lopcToNetCDF.py unpackLOPCbin():723 [1] >>> Unpacking LOPC data from /data/auv_data/dorado/missionlogs/2010.259.01/lopc.bin INFO 2025-06-26 15:52:16,229 lopcToNetCDF.py unpackLOPCbin():724 [1] >>> Will write to NetCDF file /data/auv_data/dorado/missionnetcdfs/2010.259.01/lopc.nc INFO 2025-06-26 15:52:16,229 lopcToNetCDF.py openNetCDFFile():1861 [1] Will output NetCDF file to /data/auv_data/dorado/missionnetcdfs/2010.259.01/lopc.nc INFO 2025-06-26 15:52:16,230 lopcToNetCDF.py openNetCDFFile():1887 [1] missionName = 2010.259.01 INFO 2025-06-26 15:52:16,230 lopcToNetCDF.py openNetCDFFile():1910 [1] Writing bin axis for len(self.dataStructure['binSizeList']) = 994 WARNING 2025-06-26 15:52:16,233 lopcToNetCDF.py readCframeData():665 [1] Unable to parse a float from the string cstr[:70] = A0392709 WARNING 2025-06-26 15:52:16,233 lopcToNetCDF.py readCframeData():665 [1] Unable to parse a float from the string cstr[:70] = INFO 2025-06-26 15:52:16,289 lopcToNetCDF.py unpackLOPCbin():951 [1] L Frames sample M Frames ShortLFrame LBeforeMEnd MBeforeLEnd UnknownFrame Garbled L INFO 2025-06-26 15:52:16,289 lopcToNetCDF.py unpackLOPCbin():969 [1] Count Count Count Error Error Error Error Error INFO 2025-06-26 15:52:16,289 lopcToNetCDF.py unpackLOPCbin():987 [1] -------- -------- -------- ----------- ----------- ----------- ----------- ------------ INFO 2025-06-26 15:52:20,169 lopcToNetCDF.py main():2345 [1] >>> Done reading file. INFO 2025-06-26 15:52:20,169 lopcToNetCDF.py main():2346 [1] lFrameCount = 5742, mFrameCount = 10139 INFO 2025-06-26 15:52:20,169 lopcToNetCDF.py constructTimestampList():1296 [1] parosci_nc = /data/auv_data/dorado/missionnetcdfs/2010.259.01/parosci.nc INFO 2025-06-26 15:52:20,169 lopcToNetCDF.py constructTimestampList():1297 [1] Using NetCDF4 to get start and end epoch seconds for this mission from this URL: INFO 2025-06-26 15:52:20,169 lopcToNetCDF.py constructTimestampList():1300 [1] /data/auv_data/dorado/missionnetcdfs/2010.259.01/parosci.nc INFO 2025-06-26 15:52:20,171 lopcToNetCDF.py constructTimestampList():1317 [1] From associated parosci.nc file: sensor_on_time = 1284665951.9, sensor_off_time = 1284668784.4 INFO 2025-06-26 15:52:20,172 lopcToNetCDF.py constructTimestampList():1322 [1] Duration is 2832 seconds. Expecting to read 5664 L frames from the lopc.bin file. INFO 2025-06-26 15:52:20,172 lopcToNetCDF.py constructTimestampList():1330 [1] recCount not passed in, assuming we'll have 5664 records from the lopc.bin file. INFO 2025-06-26 15:52:20,172 lopcToNetCDF.py constructTimestampList():1340 [1] Calling correctSampleCountList() with sampleCountList[0] = 57371 and len(sampleCountList) = 5742 INFO 2025-06-26 15:52:20,172 lopcToNetCDF.py correctSampleCountList():1737 [1] Found overflows at indices: [] INFO 2025-06-26 15:52:20,172 lopcToNetCDF.py correctSampleCountList():1745 [1] Original sampleCountList = [57371 57372 58953 ... 64690 64691 64692] INFO 2025-06-26 15:52:20,172 lopcToNetCDF.py correctSampleCountList():1746 [1] Found 0 0 values at indices: [] INFO 2025-06-26 15:52:20,173 lopcToNetCDF.py correctSampleCountList():1779 [1] Found 0 stuck values at indices: [] INFO 2025-06-26 15:52:20,173 lopcToNetCDF.py deSpike():1588 [1] d_sampleCountList = [ 1 1581 1 ... 1 1 1] INFO 2025-06-26 15:52:20,173 lopcToNetCDF.py deSpike():1590 [1] Found 1 spike indicators at indices: [2] INFO 2025-06-26 15:52:20,173 lopcToNetCDF.py deSpike():1595 [1] Identifying nature of spike value = 58953 at index = 2 INFO 2025-06-26 15:52:20,173 lopcToNetCDF.py deSpike():1714 [1] This is the last element in spike_indx. No need to deSpike(). INFO 2025-06-26 15:52:20,173 lopcToNetCDF.py correctSampleCountList():1805 [1] After despike() sampleCountList = [57371 57372 58953 ... 64690 64691 64692] INFO 2025-06-26 15:52:20,173 lopcToNetCDF.py constructTimestampList():1347 [1] correctSampleCountList() returned correctedSampleCountList = [57371 57372 58953 ... 64690 64691 64692] with len(correctedSampleCountList) = 5742 INFO 2025-06-26 15:52:20,173 lopcToNetCDF.py constructTimestampList():1358 [1] Subtracting 57371 from all values of correctedSampleCountList INFO 2025-06-26 15:52:20,173 lopcToNetCDF.py constructTimestampList():1363 [1] Constructing timestampArray from instrument corrected sampleCount and constant deltaT = 0.500000 INFO 2025-06-26 15:52:20,173 lopcToNetCDF.py constructTimestampList():1368 [1] New re-zeroed correctedSampleCountList = [0.0000e+00 5.0000e-01 7.9100e+02 ... 3.6595e+03 3.6600e+03 3.6605e+03] INFO 2025-06-26 15:52:20,174 lopcToNetCDF.py constructTimestampList():1379 [1] timestampArray = [1.28466595e+09 1.28466595e+09 1.28466674e+09 ... 1.28466961e+09 1.28466961e+09 1.28466961e+09] INFO 2025-06-26 15:52:20,174 lopcToNetCDF.py constructTimestampList():1380 [1] timestampArray[:2] = [1284665951.9 1284665952.4, ..., timestampArray[-2:] = 1284669611.9 1284669612.4] INFO 2025-06-26 15:52:20,180 lopcToNetCDF.py constructTimestampList():1389 [1] timestampList[:2] = [np.float64(1284665951.8818448), np.float64(1284665952.3818448)], ..., timestampList[-2:] = [np.float64(1284669611.8818448), np.float64(1284669612.3818448)]] INFO 2025-06-26 15:52:20,180 lopcToNetCDF.py constructTimestampList():1394 [1] Subsampling correctedSampleCountList (len = 5742) according to what got written to the netCDF file by the binning interval INFO 2025-06-26 15:52:20,180 lopcToNetCDF.py constructTimestampList():1399 [1] lFrameCountWrittenList[:2] = [20, 41], ... lFrameCountWrittenList[-2:] = [5711, 5732] INFO 2025-06-26 15:52:20,180 lopcToNetCDF.py constructTimestampList():1420 [1] len(subSampledCorrectedSampleCountList) = 273 INFO 2025-06-26 15:52:20,180 lopcToNetCDF.py constructTimestampList():1439 [1] len(timestampList) = 5742 INFO 2025-06-26 15:52:20,180 lopcToNetCDF.py constructTimestampList():1440 [1] timestampList[:2] = [np.float64(1284665951.8818448), np.float64(1284665952.3818448)], ..., timestampList[-2:] = [np.float64(1284669611.8818448), np.float64(1284669612.3818448)]] INFO 2025-06-26 15:52:20,180 lopcToNetCDF.py constructTimestampList():1446 [1] Subsampling timestampList (len = 5742) according to what got written to the netCDF file by the binning interval INFO 2025-06-26 15:52:20,180 lopcToNetCDF.py constructTimestampList():1457 [1] Taking indices [[np.int32(19), np.int32(40)] ... [np.int32(5710), np.int32(5731)]] from timestampList to create subSampledTimestampList INFO 2025-06-26 15:52:20,180 lopcToNetCDF.py constructTimestampList():1463 [1] len(subSampledTimestampList) = 273 INFO 2025-06-26 15:52:20,180 lopcToNetCDF.py constructTimestampList():1477 [1] Finding elements of cFrameEsecsList that != -9999 INFO 2025-06-26 15:52:20,186 lopcToNetCDF.py closeNetCDFFile():2096 [1] Writing time axis for len(tsList) = 273 INFO 2025-06-26 15:52:20,186 lopcToNetCDF.py closeNetCDFFile():2099 [1] tsList[:1] = [np.float64(1284666751.3818448)], ..., tsList[-2:] = [np.float64(1284669596.8818448), np.float64(1284669607.3818448)] INFO 2025-06-26 15:52:20,186 lopcToNetCDF.py closeNetCDFFile():2100 [1] Begin time = 2010-09-16 19:52:31 Z INFO 2025-06-26 15:52:20,186 lopcToNetCDF.py closeNetCDFFile():2103 [1] End time = 2010-09-16 20:40:07 Z INFO 2025-06-26 15:52:20,186 lopcToNetCDF.py closeNetCDFFile():2107 [1] Writing time axis for len(cFrameEsecsList) = 273 INFO 2025-06-26 15:52:20,186 lopcToNetCDF.py closeNetCDFFile():2111 [1] cFrameEsecsList[:1] = [1.28466882e+09], ..., cFrameEsecsList[-2:] = [1.28466882e+09 1.28466882e+09] INFO 2025-06-26 15:52:20,187 lopcToNetCDF.py closeNetCDFFile():2116 [1] Begin time = 2010-09-16 20:26:57 Z INFO 2025-06-26 15:52:20,187 lopcToNetCDF.py closeNetCDFFile():2120 [1] End time = 2010-09-16 20:26:57 Z INFO 2025-06-26 15:52:20,190 lopcToNetCDF.py main():2381 [1] Created file: /data/auv_data/dorado/missionnetcdfs/2010.259.01/lopc.nc INFO 2025-06-26 15:52:20,190 lopcToNetCDF.py main():2384 [1] Processing finished: Thu Jun 26 15:52:20 2025 Elapsed processing time from start of processing = 3 seconds INFO 2025-06-26 15:52:20,191 process.py calibrate():227 [1] Calibration steps for 2010.259.01 INFO 2025-06-26 15:52:20,268 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-06-26 15:52:20,270 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-06-26 15:52:21,359 calibrate.py _nudge_pos():1806 [1] 157: 0.090 -0.0001199 -0.0057052 5961 19.88 -0.904 -53.178 2010-09-16T20:01:35.979767552 INFO 2025-06-26 15:52:21,407 calibrate.py _nudge_pos():1806 [1] 162: 0.080 0.0000261 -0.0000304 55 0.18 21.668 -31.274 2010-09-16T20:01:50.988739584 INFO 2025-06-26 15:52:21,633 calibrate.py _nudge_pos():1806 [1] 186: 0.090 -0.0014335 -0.0000222 7117 23.73 -9.050 -0.173 2010-09-16T20:25:58.979545344 INFO 2025-06-26 15:52:22,228 calibrate.py _nudge_pos():1862 [1] 199: - - - 1 0.00 - - INFO 2025-06-26 15:52:22,228 calibrate.py _nudge_pos():1868 [1] Points in final series = 14112 INFO 2025-06-26 15:52:22,246 calibrate.py _depth_process():2162 [1] Removing depths outside of valid_depth_range=Range(min=-1, max=110) for self.args.mission=2010.259.01 INFO 2025-06-26 15:52:22,247 calibrate.py _depth_process():2175 [1] Setting 0 depths values to NaN WARNING 2025-06-26 15:52:22,248 calibrate.py _depth_process():2193 [1] Expected sample_rate to be 10 Hz, instead it's 7.14 Hz INFO 2025-06-26 15:52:22,367 calibrate.py _geometric_depth_correction():3423 [1] hs2: d_beg_time_diff: 8 seconds, d_end_time_diff: 36 seconds INFO 2025-06-26 15:52:22,368 calibrate.py _geometric_depth_correction():3437 [1] hs2: Special QC for mission 2010.259.01: Setting corrected_depth to NaN for times after 2010-09-16T20:26:24.367805952 INFO 2025-06-26 15:52:23,196 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 24 seconds, d_end_time_diff: 36 seconds INFO 2025-06-26 15:52:23,196 calibrate.py _geometric_depth_correction():3437 [1] ctd1: Special QC for mission 2010.259.01: Setting corrected_depth to NaN for times after 2010-09-16T20:26:24.367805952 INFO 2025-06-26 15:52:23,282 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 24 seconds, d_end_time_diff: 36 seconds INFO 2025-06-26 15:52:23,283 calibrate.py _geometric_depth_correction():3437 [1] ctd1: Special QC for mission 2010.259.01: Setting corrected_depth to NaN for times after 2010-09-16T20:26:24.367805952 INFO 2025-06-26 15:52:23,285 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2010.259.01/ctd1.nc INFO 2025-06-26 15:52:23,286 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd1_salinity values to NaN INFO 2025-06-26 15:52:23,286 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-06-26 15:52:23,286 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1 INFO 2025-06-26 15:52:23,925 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 27 seconds, d_end_time_diff: 36 seconds INFO 2025-06-26 15:52:23,926 calibrate.py _geometric_depth_correction():3437 [1] ctd2: Special QC for mission 2010.259.01: Setting corrected_depth to NaN for times after 2010-09-16T20:26:24.367805952 INFO 2025-06-26 15:52:24,013 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 27 seconds, d_end_time_diff: 36 seconds INFO 2025-06-26 15:52:24,014 calibrate.py _geometric_depth_correction():3437 [1] ctd2: Special QC for mission 2010.259.01: Setting corrected_depth to NaN for times after 2010-09-16T20:26:24.367805952 INFO 2025-06-26 15:52:24,016 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2010.259.01/ctd2.nc INFO 2025-06-26 15:52:24,017 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd2_salinity values to NaN INFO 2025-06-26 15:52:24,017 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-06-26 15:52:24,018 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2 ERROR 2025-06-26 15:52:24,025 calibrate.py process_logs():3542 [1] Error processing biolume: biolume has no orig_data - likely a missing or zero-sized .log file in missionlogs/2010.259.01 ERROR 2025-06-26 15:52:24,034 calibrate.py process_logs():3542 [1] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2010.259.01 INFO 2025-06-26 15:52:24,048 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2010.259.01/dorado_2010.259.01_cal.nc INFO 2025-06-26 15:52:25,326 calibrate.py write_netcdf():3512 [1] Data variables written: ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_salinity_onboard, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_salinity_onboard, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, hs2_bbp420, hs2_bbp700, hs2_depth, hs2_fl700, hs2_time, isus_nitrate, isus_quality, isus_temp, isus_time, lopc_LCcount, lopc_countListSum, lopc_flowSpeed, lopc_nonTransCount, lopc_time, lopc_transCount, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, tailcone_propRpm, tailcone_time, time INFO 2025-06-26 15:52:25,331 process.py align():251 [1] Alignment steps for 2010.259.01 INFO 2025-06-26 15:52:25,356 align.py process_cal():139 [1] Processing dorado_2010.259.01_cal.nc from /data/auv_data/dorado/missionnetcdfs/2010.259.01 INFO 2025-06-26 15:52:25,364 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 15:52:25,365 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 15:52:25,384 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 15:52:25,386 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 15:52:25,402 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 15:52:25,404 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 15:52:25,413 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-06-26 15:52:25,413 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-06-26 15:52:25,420 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 15:52:25,422 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 15:52:25,438 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2010.259.01_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:52:25,440 align.py process_cal():249 [1] hs2_bbp420: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:52:25,456 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2010.259.01_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:52:25,458 align.py process_cal():249 [1] hs2_bbp700: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:52:25,474 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2010.259.01_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:52:25,476 align.py process_cal():249 [1] hs2_fl700: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:52:25,491 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.259.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:52:25,493 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:52:25,509 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.259.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:52:25,511 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:52:25,528 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.259.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:52:25,530 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:52:25,546 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.259.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:52:25,548 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:52:25,564 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.259.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:52:25,567 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:52:25,583 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.259.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:52:25,585 align.py process_cal():249 [1] ctd1_salinity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:52:25,602 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.259.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:52:25,604 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:52:25,620 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.259.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:52:25,622 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:52:25,638 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.259.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:52:25,641 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:52:25,657 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.259.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:52:25,660 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:52:25,677 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.259.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:52:25,679 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:52:25,695 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.259.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:52:25,697 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:52:25,714 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.259.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:52:25,716 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:52:25,733 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.259.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:52:25,736 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:52:25,753 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.259.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:52:25,755 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:52:25,772 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.259.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:52:25,774 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:52:25,791 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.259.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:52:25,793 align.py process_cal():249 [1] ctd2_salinity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:52:25,810 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.259.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:52:25,813 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:52:25,829 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.259.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:52:25,831 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:52:25,851 align.py process_cal():249 [1] isus_nitrate: instrument_sample_rate_hz = 0.77 INFO 2025-06-26 15:52:25,868 align.py process_cal():249 [1] isus_temp: instrument_sample_rate_hz = 0.77 INFO 2025-06-26 15:52:25,885 align.py process_cal():249 [1] isus_quality: instrument_sample_rate_hz = 0.77 INFO 2025-06-26 15:52:25,901 align.py process_cal():249 [1] lopc_countListSum: instrument_sample_rate_hz = 0.10 INFO 2025-06-26 15:52:25,918 align.py process_cal():249 [1] lopc_transCount: instrument_sample_rate_hz = 0.10 INFO 2025-06-26 15:52:25,934 align.py process_cal():249 [1] lopc_nonTransCount: instrument_sample_rate_hz = 0.10 INFO 2025-06-26 15:52:25,950 align.py process_cal():249 [1] lopc_LCcount: instrument_sample_rate_hz = 0.10 INFO 2025-06-26 15:52:25,967 align.py process_cal():249 [1] lopc_flowSpeed: instrument_sample_rate_hz = 0.10 INFO 2025-06-26 15:52:25,984 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 4.98 INFO 2025-06-26 15:52:26,000 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2010.259.01/dorado_2010.259.01_align.nc INFO 2025-06-26 15:52:26,053 align.py write_netcdf():342 [1] Data variables written: ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_salinity_onboard, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_salinity_onboard, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, hs2_bbp420, hs2_bbp700, hs2_depth, hs2_fl700, hs2_latitude, hs2_longitude, hs2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, lopc_LCcount, lopc_countListSum, lopc_depth, lopc_flowSpeed, lopc_latitude, lopc_longitude, lopc_nonTransCount, lopc_time, lopc_transCount, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-06-26 15:52:26,056 process.py resample():273 [1] Resampling steps for 2010.259.01 INFO 2025-06-26 15:52:26,056 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-06-26 15:52:26,079 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2010.259.01/dorado_2010.259.01_align.nc mission netCDF file INFO 2025-06-26 15:52:26,084 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2010.259.01/dorado_2010.259.01_align.nc mission netCDF file INFO 2025-06-26 15:52:26,085 resample.py get_mission_start_end():1145 [1] navigation: 2010-09-16T19:39:57.588713472 to 2010-09-16T20:27:01.185283840 (0 days 00:13:06.196560896 before mission_end) WARNING 2025-06-26 15:52:26,086 resample.py get_mission_start_end():1156 [1] Instrument navigation has a gap > 5 minutes at the end of the mission: 0 days 00:13:06.196560896 INFO 2025-06-26 15:52:26,087 resample.py get_mission_start_end():1145 [1] hs2 : 2010-09-16T19:39:20.481255424 to 2010-09-16T20:27:01.345273088 (0 days 00:13:06.036571648 before mission_end) WARNING 2025-06-26 15:52:26,088 resample.py get_mission_start_end():1156 [1] Instrument hs2 has a gap > 5 minutes at the end of the mission: 0 days 00:13:06.036571648 INFO 2025-06-26 15:52:26,089 resample.py get_mission_start_end():1145 [1] ctd1 : 2010-09-16T19:39:36.490158848 to 2010-09-16T20:27:01.165285376 (0 days 00:13:06.216559360 before mission_end) WARNING 2025-06-26 15:52:26,090 resample.py get_mission_start_end():1156 [1] Instrument ctd1 has a gap > 5 minutes at the end of the mission: 0 days 00:13:06.216559360 INFO 2025-06-26 15:52:26,091 resample.py get_mission_start_end():1145 [1] ctd2 : 2010-09-16T19:39:39.709938176 to 2010-09-16T20:27:01.135287296 (0 days 00:13:06.246557440 before mission_end) WARNING 2025-06-26 15:52:26,091 resample.py get_mission_start_end():1156 [1] Instrument ctd2 has a gap > 5 minutes at the end of the mission: 0 days 00:13:06.246557440 INFO 2025-06-26 15:52:26,092 resample.py get_mission_start_end():1145 [1] isus : 2010-09-16T19:40:23.256955136 to 2010-09-16T20:27:00.805309952 (0 days 00:13:06.576534784 before mission_end) WARNING 2025-06-26 15:52:26,093 resample.py get_mission_start_end():1156 [1] Instrument isus has a gap > 5 minutes at the end of the mission: 0 days 00:13:06.576534784 INFO 2025-06-26 15:52:26,094 resample.py get_mission_start_end():1145 [1] lopc : 2010-09-16T19:52:31.381844736 to 2010-09-16T20:40:07.381844736 (0 days 00:00:00 before mission_end) INFO 2025-06-26 15:52:26,095 resample.py get_mission_start_end():1145 [1] tailcone : 2010-09-16T19:39:12.381810432 to 2010-09-16T20:27:01.195283200 (0 days 00:13:06.186561536 before mission_end) WARNING 2025-06-26 15:52:26,096 resample.py get_mission_start_end():1156 [1] Instrument tailcone has a gap > 5 minutes at the end of the mission: 0 days 00:13:06.186561536 INFO 2025-06-26 15:52:26,096 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2010.259.01/dorado_2010.259.01_align.nc mission netCDF file INFO 2025-06-26 15:52:26,097 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-06-26 15:52:26,151 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-06-26 15:52:26,151 resample.py resample_variable():1038 [1] Padding navigation_roll with 0 days 00:13:06.196560896 of NaNs to the end of mission INFO 2025-06-26 15:52:26,164 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-06-26 15:52:26,164 resample.py resample_variable():1038 [1] Padding navigation_pitch with 0 days 00:13:06.196560896 of NaNs to the end of mission INFO 2025-06-26 15:52:26,177 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-06-26 15:52:26,177 resample.py resample_variable():1038 [1] Padding navigation_yaw with 0 days 00:13:06.196560896 of NaNs to the end of mission INFO 2025-06-26 15:52:26,190 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 15:52:26,190 resample.py resample_variable():1038 [1] Padding navigation_mWaterSpeed with 0 days 00:13:06.196560896 of NaNs to the end of mission INFO 2025-06-26 15:52:26,202 resample.py resample_variable():1031 [1] Resampling hs2_bbp420 with frequency 1S following 3 point median filter INFO 2025-06-26 15:52:26,202 resample.py resample_variable():1038 [1] Padding hs2_bbp420 with 0 days 00:13:06.036571648 of NaNs to the end of mission INFO 2025-06-26 15:52:26,214 resample.py resample_variable():1031 [1] Resampling hs2_bbp700 with frequency 1S following 3 point median filter INFO 2025-06-26 15:52:26,214 resample.py resample_variable():1038 [1] Padding hs2_bbp700 with 0 days 00:13:06.036571648 of NaNs to the end of mission INFO 2025-06-26 15:52:26,226 resample.py resample_variable():1031 [1] Resampling hs2_fl700 with frequency 1S following 3 point median filter INFO 2025-06-26 15:52:26,226 resample.py resample_variable():1038 [1] Padding hs2_fl700 with 0 days 00:13:06.036571648 of NaNs to the end of mission INFO 2025-06-26 15:52:26,238 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 15:52:26,238 resample.py resample_variable():1038 [1] Padding ctd1_temperature with 0 days 00:13:06.216559360 of NaNs to the end of mission INFO 2025-06-26 15:52:26,249 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 15:52:26,249 resample.py resample_variable():1038 [1] Padding ctd1_conductivity with 0 days 00:13:06.216559360 of NaNs to the end of mission INFO 2025-06-26 15:52:26,259 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 15:52:26,260 resample.py resample_variable():1038 [1] Padding ctd1_salinity with 0 days 00:13:06.216559360 of NaNs to the end of mission INFO 2025-06-26 15:52:26,270 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 15:52:26,270 resample.py resample_variable():1038 [1] Padding ctd1_temperature_onboard with 0 days 00:13:06.216559360 of NaNs to the end of mission INFO 2025-06-26 15:52:26,281 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 15:52:26,282 resample.py resample_variable():1038 [1] Padding ctd1_conductivity_onboard with 0 days 00:13:06.216559360 of NaNs to the end of mission INFO 2025-06-26 15:52:26,292 resample.py resample_variable():1031 [1] Resampling ctd1_salinity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 15:52:26,292 resample.py resample_variable():1038 [1] Padding ctd1_salinity_onboard with 0 days 00:13:06.216559360 of NaNs to the end of mission INFO 2025-06-26 15:52:26,304 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-06-26 15:52:26,304 resample.py resample_variable():1038 [1] Padding ctd1_dissolvedO2 with 0 days 00:13:06.216559360 of NaNs to the end of mission INFO 2025-06-26 15:52:26,314 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-06-26 15:52:26,315 resample.py resample_variable():1038 [1] Padding ctd1_oxygen_mll with 0 days 00:13:06.216559360 of NaNs to the end of mission INFO 2025-06-26 15:52:26,326 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-06-26 15:52:26,326 resample.py resample_variable():1038 [1] Padding ctd1_oxygen_umolkg with 0 days 00:13:06.216559360 of NaNs to the end of mission INFO 2025-06-26 15:52:26,337 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-06-26 15:52:26,337 resample.py resample_variable():1038 [1] Padding ctd1_flow1 with 0 days 00:13:06.216559360 of NaNs to the end of mission INFO 2025-06-26 15:52:26,349 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 15:52:26,349 resample.py resample_variable():1038 [1] Padding ctd2_temperature with 0 days 00:13:06.246557440 of NaNs to the end of mission INFO 2025-06-26 15:52:26,363 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 15:52:26,363 resample.py resample_variable():1038 [1] Padding ctd2_conductivity with 0 days 00:13:06.246557440 of NaNs to the end of mission INFO 2025-06-26 15:52:26,376 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 15:52:26,376 resample.py resample_variable():1038 [1] Padding ctd2_salinity with 0 days 00:13:06.246557440 of NaNs to the end of mission INFO 2025-06-26 15:52:26,388 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 15:52:26,388 resample.py resample_variable():1038 [1] Padding ctd2_temperature_onboard with 0 days 00:13:06.246557440 of NaNs to the end of mission INFO 2025-06-26 15:52:26,400 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 15:52:26,400 resample.py resample_variable():1038 [1] Padding ctd2_conductivity_onboard with 0 days 00:13:06.246557440 of NaNs to the end of mission INFO 2025-06-26 15:52:26,413 resample.py resample_variable():1031 [1] Resampling ctd2_salinity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 15:52:26,413 resample.py resample_variable():1038 [1] Padding ctd2_salinity_onboard with 0 days 00:13:06.246557440 of NaNs to the end of mission INFO 2025-06-26 15:52:26,425 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-06-26 15:52:26,425 resample.py resample_variable():1038 [1] Padding ctd2_flow2 with 0 days 00:13:06.246557440 of NaNs to the end of mission INFO 2025-06-26 15:52:26,435 resample.py resample_variable():1031 [1] Resampling isus_nitrate with frequency 1S following 3 point median filter INFO 2025-06-26 15:52:26,435 resample.py resample_variable():1038 [1] Padding isus_nitrate with 0 days 00:13:06.576534784 of NaNs to the end of mission INFO 2025-06-26 15:52:26,445 resample.py resample_variable():1031 [1] Resampling isus_temp with frequency 1S following 3 point median filter INFO 2025-06-26 15:52:26,445 resample.py resample_variable():1038 [1] Padding isus_temp with 0 days 00:13:06.576534784 of NaNs to the end of mission INFO 2025-06-26 15:52:26,454 resample.py resample_variable():1031 [1] Resampling isus_quality with frequency 1S following 3 point median filter INFO 2025-06-26 15:52:26,454 resample.py resample_variable():1038 [1] Padding isus_quality with 0 days 00:13:06.576534784 of NaNs to the end of mission INFO 2025-06-26 15:52:26,464 resample.py resample_variable():1031 [1] Resampling lopc_countListSum with frequency 1S following 3 point median filter INFO 2025-06-26 15:52:26,472 resample.py resample_variable():1031 [1] Resampling lopc_transCount with frequency 1S following 3 point median filter INFO 2025-06-26 15:52:26,480 resample.py resample_variable():1031 [1] Resampling lopc_nonTransCount with frequency 1S following 3 point median filter INFO 2025-06-26 15:52:26,488 resample.py resample_variable():1031 [1] Resampling lopc_LCcount with frequency 1S following 3 point median filter INFO 2025-06-26 15:52:26,496 resample.py resample_variable():1031 [1] Resampling lopc_flowSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 15:52:26,508 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-06-26 15:52:26,508 resample.py resample_variable():1038 [1] Padding tailcone_propRpm with 0 days 00:13:06.186561536 of NaNs to the end of mission INFO 2025-06-26 15:52:26,641 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2010.259.01/dorado_2010.259.01_1S.nc INFO 2025-06-26 15:52:27,344 create_products.py gulper_odv():401 [1] No gulper times found for 2010.259.01 INFO 2025-06-26 15:52:27,344 process.py archive():337 [1] Archiving steps for 2010.259.01 INFO 2025-06-26 15:52:27,344 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2010.259.01/dorado_2010.259.01, BASE_PATH = /data/auv_data INFO 2025-06-26 15:52:27,344 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2010.259.01/dorado_2010.259.01 files to /Volumes/AUVCTD/surveys/2010/netcdf INFO 2025-06-26 15:52:27,346 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2010/netcdf/dorado_2010.259.01_1S.nc INFO 2025-06-26 15:52:27,354 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.259.01/dorado_2010.259.01_1S.nc /Volumes/AUVCTD/surveys/2010/netcdf done. INFO 2025-06-26 15:52:27,356 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2010/netcdf/dorado_2010.259.01_cal.nc INFO 2025-06-26 15:52:27,374 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.259.01/dorado_2010.259.01_cal.nc /Volumes/AUVCTD/surveys/2010/netcdf done. INFO 2025-06-26 15:52:27,375 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2010/netcdf/dorado_2010.259.01_align.nc INFO 2025-06-26 15:52:27,393 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.259.01/dorado_2010.259.01_align.nc /Volumes/AUVCTD/surveys/2010/netcdf done. INFO 2025-06-26 15:52:27,403 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.259.01/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010259/2010.259.01 done. INFO 2025-06-26 15:52:27,411 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.259.01/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010259/2010.259.01 done. INFO 2025-06-26 15:52:27,415 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.259.01/gps.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010259/2010.259.01 done. INFO 2025-06-26 15:52:27,422 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.259.01/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010259/2010.259.01 done. INFO 2025-06-26 15:52:27,436 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.259.01/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010259/2010.259.01 done. INFO 2025-06-26 15:52:27,440 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.259.01/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010259/2010.259.01 done. INFO 2025-06-26 15:52:27,448 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.259.01/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010259/2010.259.01 done. INFO 2025-06-26 15:52:27,456 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.259.01/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010259/2010.259.01 done. INFO 2025-06-26 15:52:27,471 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.259.01/lopc.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010259/2010.259.01 done. INFO 2025-06-26 15:52:27,471 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-06-26 15:52:27,471 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.259.01/dorado_2010.259.01_processing.log /Volumes/AUVCTD/surveys/2010/netcdf