INFO 2025-06-26 15:50:43,595 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2005 --end_year 2014 --num_cores 1 -v --noinput --clobber INFO 2025-06-26 15:50:43,595 process.py process_mission():434 [1] dorado_info[mission]["comment"] = ESP drifter missions out at station 67-70 with Flyer doing casts and ESP drifting south toward Davidson Seamount - no gulpers (Frederic sent me note about survey grouping) Faulty parosci lead to several mission depth aborts at beginning of this set of volume surveys - ctdToUse = ctd1 INFO 2025-06-26 15:50:43,595 process.py process_mission():449 [1] Processing AUVCTD mission 2010.258.08 by user docker_user on host eae60d30a712 INFO 2025-06-26 15:50:43,595 process.py download_process():165 [1] Download and processing steps for 2010.258.08 INFO 2025-06-26 15:50:43,596 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2010/2010258/2010.258.08 INFO 2025-06-26 15:50:43,596 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2010/2010258/2010.258.08 to /data/auv_data/dorado/missionlogs/2010.258.08 INFO 2025-06-26 15:50:49,434 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2010.258.08 INFO 2025-06-26 15:50:49,434 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.258.08/ctdDriver.log (17809643 bytes) INFO 2025-06-26 15:50:50,885 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.258.08/ctdDriver2.log (17809343 bytes) INFO 2025-06-26 15:50:52,263 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.258.08/gps.log (321980 bytes) INFO 2025-06-26 15:50:52,311 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.258.08/hydroscatlog.log (15581770 bytes) INFO 2025-06-26 15:50:54,009 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.258.08/navigation.log (54693598 bytes) INFO 2025-06-26 15:50:58,129 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.258.08/isuslog.log (1157045 bytes) INFO 2025-06-26 15:50:58,246 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.258.08/parosci.log (18103526 bytes) INFO 2025-06-26 15:50:59,769 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.258.08/tailCone.log (11117083 bytes) INFO 2025-06-26 15:51:01,126 logs2netcdfs.py download_process_logs():807 [1] Time to process: 11.69 seconds INFO 2025-06-26 15:51:01,126 process.py download_process():198 [1] Processing file /data/auv_data/dorado/missionlogs/2010.258.08/lopc.bin (49274000 bytes) INFO 2025-06-26 15:51:01,127 lopcToNetCDF.py main():2297 [1] Processing begun: Thu Jun 26 15:51:01 2025 INFO 2025-06-26 15:51:01,127 lopcToNetCDF.py constructTimestampList():1296 [1] parosci_nc = /data/auv_data/dorado/missionnetcdfs/2010.258.08/parosci.nc INFO 2025-06-26 15:51:01,127 lopcToNetCDF.py constructTimestampList():1297 [1] Using NetCDF4 to get start and end epoch seconds for this mission from this URL: INFO 2025-06-26 15:51:01,127 lopcToNetCDF.py constructTimestampList():1300 [1] /data/auv_data/dorado/missionnetcdfs/2010.258.08/parosci.nc INFO 2025-06-26 15:51:01,130 lopcToNetCDF.py constructTimestampList():1317 [1] From associated parosci.nc file: sensor_on_time = 1284592149.9, sensor_off_time = 1284638553.7 INFO 2025-06-26 15:51:01,130 lopcToNetCDF.py constructTimestampList():1322 [1] Duration is 46403 seconds. Expecting to read 92806 L frames from the lopc.bin file. INFO 2025-06-26 15:51:01,131 lopcToNetCDF.py constructTimestampList():1330 [1] recCount not passed in, assuming we'll have 92806 records from the lopc.bin file. INFO 2025-06-26 15:51:01,679 lopcToNetCDF.py main():2321 [1] Examined sibling parosci.nc file to find startTime = 2010-09-15 23:09:09 Z and endTime = 2010-09-16 12:02:33 Z with 92806 records expected to be read from lopc.bin INFO 2025-06-26 15:51:01,679 lopcToNetCDF.py unpackLOPCbin():723 [1] >>> Unpacking LOPC data from /data/auv_data/dorado/missionlogs/2010.258.08/lopc.bin INFO 2025-06-26 15:51:01,679 lopcToNetCDF.py unpackLOPCbin():724 [1] >>> Will write to NetCDF file /data/auv_data/dorado/missionnetcdfs/2010.258.08/lopc.nc INFO 2025-06-26 15:51:01,680 lopcToNetCDF.py openNetCDFFile():1861 [1] Will output NetCDF file to /data/auv_data/dorado/missionnetcdfs/2010.258.08/lopc.nc INFO 2025-06-26 15:51:01,680 lopcToNetCDF.py openNetCDFFile():1887 [1] missionName = 2010.258.08 INFO 2025-06-26 15:51:01,680 lopcToNetCDF.py openNetCDFFile():1910 [1] Writing bin axis for len(self.dataStructure['binSizeList']) = 994 WARNING 2025-06-26 15:51:01,684 lopcToNetCDF.py readCframeData():665 [1] Unable to parse a float from the string cstr[:70] = A0213696 WARNING 2025-06-26 15:51:01,684 lopcToNetCDF.py readCframeData():665 [1] Unable to parse a float from the string cstr[:70] = INFO 2025-06-26 15:51:01,749 lopcToNetCDF.py unpackLOPCbin():951 [1] L Frames sample M Frames ShortLFrame LBeforeMEnd MBeforeLEnd UnknownFrame Garbled L INFO 2025-06-26 15:51:01,749 lopcToNetCDF.py unpackLOPCbin():969 [1] Count Count Count Error Error Error Error Error INFO 2025-06-26 15:51:01,749 lopcToNetCDF.py unpackLOPCbin():987 [1] -------- -------- -------- ----------- ----------- ----------- ----------- ------------ ERROR 2025-06-26 15:51:02,997 process.py download_process():223 [1] UnexpectedAreaOfCode: Encountered unexpected area of code - lopc.nc file is probably corrupt INFO 2025-06-26 15:51:02,999 process.py calibrate():227 [1] Calibration steps for 2010.258.08 INFO 2025-06-26 15:51:03,382 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-06-26 15:51:03,384 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-06-26 15:51:04,555 calibrate.py _nudge_pos():1806 [1] 155: 0.130 0.0007630 0.0000692 7915 26.40 4.323 0.486 2010-09-15T23:38:05.778710784 INFO 2025-06-26 15:51:05,044 calibrate.py _nudge_pos():1806 [1] 203: 0.130 0.0018404 -0.0025135 8128 27.10 10.159 -17.188 2010-09-16T00:05:58.784102144 INFO 2025-06-26 15:51:05,485 calibrate.py _nudge_pos():1806 [1] 248: 0.140 0.0004642 -0.0035963 6314 21.05 3.299 -31.663 2010-09-16T00:27:46.774498816 INFO 2025-06-26 15:51:06,755 calibrate.py _nudge_pos():1806 [1] 376: 0.140 -0.0000102 -0.0000256 65 0.21 -7.174 -22.229 2010-09-16T00:30:06.774908160 INFO 2025-06-26 15:51:07,599 calibrate.py _nudge_pos():1806 [1] 462: 0.140 0.0022346 -0.0065729 7904 26.35 12.688 -46.228 2010-09-16T00:57:52.780779008 INFO 2025-06-26 15:51:07,982 calibrate.py _nudge_pos():1806 [1] 500: 0.140 0.0008244 -0.0044577 10884 36.28 3.399 -22.768 2010-09-16T01:34:46.779109376 INFO 2025-06-26 15:51:08,392 calibrate.py _nudge_pos():1806 [1] 541: 0.140 -0.0007351 -0.0019147 3819 12.73 -8.639 -27.870 2010-09-16T01:48:10.784031488 INFO 2025-06-26 15:51:12,057 calibrate.py _nudge_pos():1806 [1] 906: 0.140 -0.0004156 -0.0014589 3519 11.73 -5.301 -23.046 2010-09-16T02:05:58.780868608 INFO 2025-06-26 15:51:12,530 calibrate.py _nudge_pos():1806 [1] 953: 0.150 0.0000405 -0.0047136 8319 27.73 0.218 -31.498 2010-09-16T02:34:28.783725568 INFO 2025-06-26 15:51:13,061 calibrate.py _nudge_pos():1806 [1] 1006: 0.150 0.0039644 -0.0040918 10149 33.83 17.535 -22.412 2010-09-16T03:09:10.781098752 INFO 2025-06-26 15:51:14,985 calibrate.py _nudge_pos():1806 [1] 1187: 0.160 -0.0020711 -0.0061469 8338 27.80 -11.149 -40.977 2010-09-16T03:39:58.774502400 INFO 2025-06-26 15:51:15,389 calibrate.py _nudge_pos():1806 [1] 1227: 0.150 0.0039809 -0.0050054 11629 38.76 15.371 -23.927 2010-09-16T04:19:23.782488320 INFO 2025-06-26 15:51:19,254 calibrate.py _nudge_pos():1806 [1] 1609: 0.160 0.0000126 0.0000476 20 0.06 29.705 139.292 2010-09-16T04:25:48.776114432 INFO 2025-06-26 15:51:19,265 calibrate.py _nudge_pos():1806 [1] 1610: 0.160 -0.0043401 -0.0058248 8330 27.76 -23.398 -38.876 2010-09-16T04:53:34.781985280 INFO 2025-06-26 15:51:19,687 calibrate.py _nudge_pos():1806 [1] 1651: 0.170 0.0012439 -0.0048117 10478 34.93 5.330 -25.526 2010-09-16T05:29:10.775659776 INFO 2025-06-26 15:51:20,125 calibrate.py _nudge_pos():1806 [1] 1693: 0.170 0.0007910 -0.0004054 3935 13.11 9.029 -5.729 2010-09-16T05:42:58.778937600 INFO 2025-06-26 15:51:26,164 calibrate.py _nudge_pos():1806 [1] 2287: 0.180 -0.0014606 -0.0047246 9933 33.11 -6.602 -26.438 2010-09-16T06:25:58.782195456 INFO 2025-06-26 15:51:26,831 calibrate.py _nudge_pos():1806 [1] 2353: 0.180 0.0027087 -0.0041032 9879 32.93 12.314 -23.089 2010-09-16T06:59:59.782377216 INFO 2025-06-26 15:51:38,329 calibrate.py _nudge_pos():1806 [1] 3480: 0.180 0.0000029 0.0000085 20 0.06 6.941 24.804 2010-09-16T07:18:50.774898944 INFO 2025-06-26 15:51:38,380 calibrate.py _nudge_pos():1806 [1] 3485: 0.180 -0.0009611 -0.0052543 10037 33.46 -4.300 -29.095 2010-09-16T07:52:22.777067520 INFO 2025-06-26 15:51:38,769 calibrate.py _nudge_pos():1806 [1] 3523: 0.180 0.0033205 -0.0029200 10433 34.78 14.294 -15.557 2010-09-16T08:27:46.781563136 INFO 2025-06-26 15:51:40,672 calibrate.py _nudge_pos():1806 [1] 3707: 0.190 -0.0000972 -0.0045392 10874 36.25 -0.401 -23.205 2010-09-16T09:07:04.780029184 INFO 2025-06-26 15:51:41,141 calibrate.py _nudge_pos():1806 [1] 3752: 0.190 0.0029398 -0.0016013 10094 33.65 13.083 -8.819 2010-09-16T09:41:28.778635520 INFO 2025-06-26 15:51:43,242 calibrate.py _nudge_pos():1806 [1] 3951: 0.200 0.0019053 -0.0019799 8608 28.69 9.941 -12.786 2010-09-16T10:13:28.777106432 INFO 2025-06-26 15:51:43,688 calibrate.py _nudge_pos():1806 [1] 3993: 0.190 0.0024697 -0.0038667 9664 32.21 11.479 -22.243 2010-09-16T10:46:22.781878016 INFO 2025-06-26 15:51:44,248 calibrate.py _nudge_pos():1806 [1] 4046: 0.200 -0.0007185 -0.0017306 2948 9.83 -10.948 -32.634 2010-09-16T10:57:04.777898240 INFO 2025-06-26 15:51:46,647 calibrate.py _nudge_pos():1806 [1] 4275: 0.200 0.0007541 -0.0038492 6238 20.79 5.430 -34.302 2010-09-16T11:21:40.776785408 INFO 2025-06-26 15:51:47,155 calibrate.py _nudge_pos():1806 [1] 4323: 0.200 0.0023117 -0.0031886 11343 37.81 9.154 -15.627 2010-09-16T12:00:16.778128384 INFO 2025-06-26 15:51:48,631 calibrate.py _nudge_pos():1862 [1] 4411: - - - 3 0.01 - - INFO 2025-06-26 15:51:48,631 calibrate.py _nudge_pos():1868 [1] Points in final series = 231304 WARNING 2025-06-26 15:51:48,921 calibrate.py _depth_process():2193 [1] Expected sample_rate to be 10 Hz, instead it's 8.33 Hz INFO 2025-06-26 15:51:50,586 calibrate.py _geometric_depth_correction():3423 [1] hs2: d_beg_time_diff: 9 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 15:51:52,310 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 27 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 15:51:53,680 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 27 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 15:51:53,683 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2010.258.08/ctd1.nc INFO 2025-06-26 15:51:53,685 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd1_salinity values to NaN INFO 2025-06-26 15:51:53,685 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-06-26 15:51:53,685 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1 INFO 2025-06-26 15:51:55,311 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 28 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 15:51:56,702 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 28 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 15:51:56,705 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2010.258.08/ctd2.nc INFO 2025-06-26 15:51:56,707 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd2_salinity values to NaN INFO 2025-06-26 15:51:56,707 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-06-26 15:51:56,707 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2 ERROR 2025-06-26 15:51:56,741 calibrate.py process_logs():3542 [1] Error processing biolume: biolume has no orig_data - likely a missing or zero-sized .log file in missionlogs/2010.258.08 ERROR 2025-06-26 15:51:56,741 calibrate.py process_logs():3542 [1] Error processing lopc: lopc has no time coordinate - likely an incomplete lopc.nc file in missionlogs/2010.258.08 ERROR 2025-06-26 15:51:56,741 calibrate.py process_logs():3542 [1] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2010.258.08 INFO 2025-06-26 15:51:56,988 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2010.258.08/dorado_2010.258.08_cal.nc INFO 2025-06-26 15:51:57,140 calibrate.py write_netcdf():3512 [1] Data variables written: ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_salinity_onboard, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_salinity_onboard, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, hs2_bbp420, hs2_bbp700, hs2_depth, hs2_fl700, hs2_time, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, tailcone_propRpm, tailcone_time, time INFO 2025-06-26 15:51:57,146 process.py align():251 [1] Alignment steps for 2010.258.08 INFO 2025-06-26 15:51:57,182 align.py process_cal():139 [1] Processing dorado_2010.258.08_cal.nc from /data/auv_data/dorado/missionnetcdfs/2010.258.08 INFO 2025-06-26 15:51:57,246 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 15:51:57,253 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 15:51:57,418 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 15:51:57,430 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 15:51:57,579 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 15:51:57,589 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 15:51:57,680 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-06-26 15:51:57,680 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-06-26 15:51:57,741 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 15:51:57,751 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 15:51:57,896 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2010.258.08_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:51:57,904 align.py process_cal():249 [1] hs2_bbp420: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:51:58,040 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2010.258.08_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:51:58,048 align.py process_cal():249 [1] hs2_bbp700: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:51:58,172 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2010.258.08_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:51:58,179 align.py process_cal():249 [1] hs2_fl700: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:51:58,303 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.258.08_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:51:58,310 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:51:58,438 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.258.08_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:51:58,445 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:51:58,570 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.258.08_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:51:58,578 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:51:58,703 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.258.08_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:51:58,711 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:51:58,835 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.258.08_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:51:58,843 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:51:58,967 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.258.08_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:51:58,974 align.py process_cal():249 [1] ctd1_salinity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:51:59,100 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.258.08_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:51:59,108 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:51:59,233 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.258.08_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:51:59,240 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:51:59,366 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.258.08_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:51:59,374 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:51:59,501 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.258.08_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:51:59,509 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:51:59,635 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.258.08_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:51:59,642 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:51:59,767 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.258.08_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:51:59,775 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:51:59,897 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.258.08_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:51:59,906 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:52:00,040 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.258.08_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:52:00,048 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:52:00,173 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.258.08_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:52:00,181 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:52:00,308 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.258.08_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:52:00,316 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:52:00,442 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.258.08_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:52:00,450 align.py process_cal():249 [1] ctd2_salinity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:52:00,584 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.258.08_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:52:00,592 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:52:00,719 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.258.08_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:52:00,727 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:52:00,897 align.py process_cal():249 [1] isus_nitrate: instrument_sample_rate_hz = 0.78 INFO 2025-06-26 15:52:00,996 align.py process_cal():249 [1] isus_temp: instrument_sample_rate_hz = 0.78 INFO 2025-06-26 15:52:01,096 align.py process_cal():249 [1] isus_quality: instrument_sample_rate_hz = 0.78 INFO 2025-06-26 15:52:01,198 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 4.99 INFO 2025-06-26 15:52:01,293 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2010.258.08/dorado_2010.258.08_align.nc INFO 2025-06-26 15:52:01,417 align.py write_netcdf():342 [1] Data variables written: ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_salinity_onboard, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_salinity_onboard, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, hs2_bbp420, hs2_bbp700, hs2_depth, hs2_fl700, hs2_latitude, hs2_longitude, hs2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-06-26 15:52:01,419 process.py resample():273 [1] Resampling steps for 2010.258.08 INFO 2025-06-26 15:52:01,419 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-06-26 15:52:01,447 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2010.258.08/dorado_2010.258.08_align.nc mission netCDF file INFO 2025-06-26 15:52:01,455 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2010.258.08/dorado_2010.258.08_align.nc mission netCDF file INFO 2025-06-26 15:52:01,457 resample.py get_mission_start_end():1145 [1] navigation: 2010-09-15T23:09:57.174388224 to 2010-09-16T12:02:33.578757120 (0 days 00:00:00.049996544 before mission_end) INFO 2025-06-26 15:52:01,459 resample.py get_mission_start_end():1145 [1] hs2 : 2010-09-15T23:09:19.166991872 to 2010-09-16T12:02:33.628753664 (0 days 00:00:00 before mission_end) INFO 2025-06-26 15:52:01,461 resample.py get_mission_start_end():1145 [1] ctd1 : 2010-09-15T23:09:37.305749504 to 2010-09-16T12:02:33.568757760 (0 days 00:00:00.059995904 before mission_end) INFO 2025-06-26 15:52:01,464 resample.py get_mission_start_end():1145 [1] ctd2 : 2010-09-15T23:09:38.275682816 to 2010-09-16T12:02:33.548759040 (0 days 00:00:00.079994624 before mission_end) INFO 2025-06-26 15:52:01,465 resample.py get_mission_start_end():1145 [1] isus : 2010-09-15T23:10:22.972621056 to 2010-09-16T12:02:33.448765952 (0 days 00:00:00.179987712 before mission_end) INFO 2025-06-26 15:52:01,468 resample.py get_mission_start_end():1145 [1] tailcone : 2010-09-15T23:09:10.617577472 to 2010-09-16T12:02:33.618754048 (0 days 00:00:00.009999616 before mission_end) INFO 2025-06-26 15:52:01,469 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2010.258.08/dorado_2010.258.08_align.nc mission netCDF file INFO 2025-06-26 15:52:01,469 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-06-26 15:52:01,946 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-06-26 15:52:02,025 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-06-26 15:52:02,102 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-06-26 15:52:02,176 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 15:52:02,242 resample.py resample_variable():1031 [1] Resampling hs2_bbp420 with frequency 1S following 3 point median filter INFO 2025-06-26 15:52:02,306 resample.py resample_variable():1031 [1] Resampling hs2_bbp700 with frequency 1S following 3 point median filter INFO 2025-06-26 15:52:02,368 resample.py resample_variable():1031 [1] Resampling hs2_fl700 with frequency 1S following 3 point median filter INFO 2025-06-26 15:52:02,430 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 15:52:02,492 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 15:52:02,552 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 15:52:02,611 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 15:52:02,671 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 15:52:02,730 resample.py resample_variable():1031 [1] Resampling ctd1_salinity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 15:52:02,790 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-06-26 15:52:02,852 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-06-26 15:52:02,912 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-06-26 15:52:02,972 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-06-26 15:52:03,034 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 15:52:03,099 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 15:52:03,166 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 15:52:03,229 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 15:52:03,294 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 15:52:03,359 resample.py resample_variable():1031 [1] Resampling ctd2_salinity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 15:52:03,429 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-06-26 15:52:03,456 resample.py resample_variable():1031 [1] Resampling isus_nitrate with frequency 1S following 3 point median filter INFO 2025-06-26 15:52:03,480 resample.py resample_variable():1031 [1] Resampling isus_temp with frequency 1S following 3 point median filter INFO 2025-06-26 15:52:03,503 resample.py resample_variable():1031 [1] Resampling isus_quality with frequency 1S following 3 point median filter INFO 2025-06-26 15:52:03,574 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-06-26 15:52:03,940 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2010.258.08/dorado_2010.258.08_1S.nc INFO 2025-06-26 15:52:05,585 create_products.py gulper_odv():401 [1] No gulper times found for 2010.258.08 INFO 2025-06-26 15:52:05,585 process.py archive():337 [1] Archiving steps for 2010.258.08 INFO 2025-06-26 15:52:05,585 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2010.258.08/dorado_2010.258.08, BASE_PATH = /data/auv_data INFO 2025-06-26 15:52:05,586 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2010.258.08/dorado_2010.258.08 files to /Volumes/AUVCTD/surveys/2010/netcdf INFO 2025-06-26 15:52:05,588 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2010/netcdf/dorado_2010.258.08_1S.nc INFO 2025-06-26 15:52:05,622 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.258.08/dorado_2010.258.08_1S.nc /Volumes/AUVCTD/surveys/2010/netcdf done. INFO 2025-06-26 15:52:05,623 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2010/netcdf/dorado_2010.258.08_cal.nc INFO 2025-06-26 15:52:05,793 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.258.08/dorado_2010.258.08_cal.nc /Volumes/AUVCTD/surveys/2010/netcdf done. INFO 2025-06-26 15:52:05,794 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2010/netcdf/dorado_2010.258.08_align.nc INFO 2025-06-26 15:52:05,976 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.258.08/dorado_2010.258.08_align.nc /Volumes/AUVCTD/surveys/2010/netcdf done. INFO 2025-06-26 15:52:06,025 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.258.08/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010258/2010.258.08 done. INFO 2025-06-26 15:52:06,077 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.258.08/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010258/2010.258.08 done. INFO 2025-06-26 15:52:06,083 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.258.08/gps.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010258/2010.258.08 done. INFO 2025-06-26 15:52:06,128 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.258.08/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010258/2010.258.08 done. INFO 2025-06-26 15:52:06,284 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.258.08/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010258/2010.258.08 done. INFO 2025-06-26 15:52:06,292 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.258.08/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010258/2010.258.08 done. INFO 2025-06-26 15:52:06,339 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.258.08/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010258/2010.258.08 done. INFO 2025-06-26 15:52:06,376 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.258.08/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010258/2010.258.08 done. INFO 2025-06-26 15:52:06,385 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.258.08/lopc.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010258/2010.258.08 done. INFO 2025-06-26 15:52:06,385 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-06-26 15:52:06,385 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.258.08/dorado_2010.258.08_processing.log /Volumes/AUVCTD/surveys/2010/netcdf