INFO 2025-06-26 15:48:31,403 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2005 --end_year 2014 --num_cores 1 -v --noinput --clobber INFO 2025-06-26 15:48:31,403 process.py process_mission():434 [1] dorado_info[mission]["comment"] = ESP drifter missions out at station 67-70 with Flyer doing casts and ESP drifting south toward Davidson Seamount - no gulpers (Frederic sent me note about survey grouping) Faulty parosci lead to several mission depth aborts at beginning of this set of volume surveys - ctdToUse = ctd1 INFO 2025-06-26 15:48:31,403 process.py process_mission():449 [1] Processing AUVCTD mission 2010.257.11 by user docker_user on host eae60d30a712 INFO 2025-06-26 15:48:31,403 process.py download_process():165 [1] Download and processing steps for 2010.257.11 INFO 2025-06-26 15:48:31,403 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2010/2010257/2010.257.11 INFO 2025-06-26 15:48:31,403 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2010/2010257/2010.257.11 to /data/auv_data/dorado/missionlogs/2010.257.11 INFO 2025-06-26 15:48:32,557 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2010.257.11 INFO 2025-06-26 15:48:32,557 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.257.11/ctdDriver.log (568235 bytes) INFO 2025-06-26 15:48:32,606 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.257.11/ctdDriver2.log (568223 bytes) INFO 2025-06-26 15:48:32,652 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.257.11/gps.log (14612 bytes) INFO 2025-06-26 15:48:32,661 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.257.11/hydroscatlog.log (504610 bytes) INFO 2025-06-26 15:48:32,719 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.257.11/navigation.log (1718442 bytes) INFO 2025-06-26 15:48:32,854 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.257.11/isuslog.log (35957 bytes) INFO 2025-06-26 15:48:32,863 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.257.11/parosci.log (506774 bytes) INFO 2025-06-26 15:48:32,911 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.257.11/tailCone.log (359227 bytes) INFO 2025-06-26 15:48:32,961 logs2netcdfs.py download_process_logs():807 [1] Time to process: 0.40 seconds INFO 2025-06-26 15:48:32,961 process.py download_process():198 [1] Processing file /data/auv_data/dorado/missionlogs/2010.257.11/lopc.bin (2301000 bytes) INFO 2025-06-26 15:48:32,961 lopcToNetCDF.py main():2297 [1] Processing begun: Thu Jun 26 15:48:32 2025 INFO 2025-06-26 15:48:32,961 lopcToNetCDF.py constructTimestampList():1296 [1] parosci_nc = /data/auv_data/dorado/missionnetcdfs/2010.257.11/parosci.nc INFO 2025-06-26 15:48:32,961 lopcToNetCDF.py constructTimestampList():1297 [1] Using NetCDF4 to get start and end epoch seconds for this mission from this URL: INFO 2025-06-26 15:48:32,961 lopcToNetCDF.py constructTimestampList():1300 [1] /data/auv_data/dorado/missionnetcdfs/2010.257.11/parosci.nc INFO 2025-06-26 15:48:32,963 lopcToNetCDF.py constructTimestampList():1317 [1] From associated parosci.nc file: sensor_on_time = 1284505570.1, sensor_off_time = 1284507075.2 INFO 2025-06-26 15:48:32,963 lopcToNetCDF.py constructTimestampList():1322 [1] Duration is 1505 seconds. Expecting to read 3010 L frames from the lopc.bin file. INFO 2025-06-26 15:48:32,963 lopcToNetCDF.py constructTimestampList():1330 [1] recCount not passed in, assuming we'll have 3010 records from the lopc.bin file. INFO 2025-06-26 15:48:32,981 lopcToNetCDF.py main():2321 [1] Examined sibling parosci.nc file to find startTime = 2010-09-14 23:06:10 Z and endTime = 2010-09-14 23:31:15 Z with 3010 records expected to be read from lopc.bin INFO 2025-06-26 15:48:32,981 lopcToNetCDF.py unpackLOPCbin():723 [1] >>> Unpacking LOPC data from /data/auv_data/dorado/missionlogs/2010.257.11/lopc.bin INFO 2025-06-26 15:48:32,981 lopcToNetCDF.py unpackLOPCbin():724 [1] >>> Will write to NetCDF file /data/auv_data/dorado/missionnetcdfs/2010.257.11/lopc.nc INFO 2025-06-26 15:48:32,981 lopcToNetCDF.py openNetCDFFile():1861 [1] Will output NetCDF file to /data/auv_data/dorado/missionnetcdfs/2010.257.11/lopc.nc INFO 2025-06-26 15:48:32,982 lopcToNetCDF.py openNetCDFFile():1887 [1] missionName = 2010.257.11 INFO 2025-06-26 15:48:32,982 lopcToNetCDF.py openNetCDFFile():1910 [1] Writing bin axis for len(self.dataStructure['binSizeList']) = 994 WARNING 2025-06-26 15:48:32,984 lopcToNetCDF.py readCframeData():665 [1] Unable to parse a float from the string cstr[:70] = A0479627 WARNING 2025-06-26 15:48:32,984 lopcToNetCDF.py readCframeData():665 [1] Unable to parse a float from the string cstr[:70] = INFO 2025-06-26 15:48:33,049 lopcToNetCDF.py unpackLOPCbin():951 [1] L Frames sample M Frames ShortLFrame LBeforeMEnd MBeforeLEnd UnknownFrame Garbled L INFO 2025-06-26 15:48:33,049 lopcToNetCDF.py unpackLOPCbin():969 [1] Count Count Count Error Error Error Error Error INFO 2025-06-26 15:48:33,049 lopcToNetCDF.py unpackLOPCbin():987 [1] -------- -------- -------- ----------- ----------- ----------- ----------- ------------ ERROR 2025-06-26 15:48:33,397 process.py download_process():223 [1] UnexpectedAreaOfCode: Encountered unexpected area of code - lopc.nc file is probably corrupt INFO 2025-06-26 15:48:33,397 process.py calibrate():227 [1] Calibration steps for 2010.257.11 INFO 2025-06-26 15:48:33,462 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-06-26 15:48:33,464 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-06-26 15:48:34,428 calibrate.py _nudge_pos():1806 [1] 144: 0.020 -0.0020106 -0.0031674 6587 21.96 -13.678 -26.723 2010-09-14T23:30:29.175968256 INFO 2025-06-26 15:48:34,865 calibrate.py _nudge_pos():1862 [1] 139: - - - 0 0.00 - - INFO 2025-06-26 15:48:34,865 calibrate.py _nudge_pos():1868 [1] Points in final series = 7272 WARNING 2025-06-26 15:48:34,877 calibrate.py _depth_process():2193 [1] Expected sample_rate to be 10 Hz, instead it's 7.14 Hz INFO 2025-06-26 15:48:34,948 calibrate.py _geometric_depth_correction():3423 [1] hs2: d_beg_time_diff: 5 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 15:48:35,026 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 27 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 15:48:35,077 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 27 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 15:48:35,078 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2010.257.11/ctd1.nc INFO 2025-06-26 15:48:35,079 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd1_salinity values to NaN INFO 2025-06-26 15:48:35,080 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-06-26 15:48:35,080 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1 INFO 2025-06-26 15:48:35,146 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 27 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 15:48:35,193 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 27 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 15:48:35,194 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2010.257.11/ctd2.nc INFO 2025-06-26 15:48:35,195 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd2_salinity values to NaN INFO 2025-06-26 15:48:35,196 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-06-26 15:48:35,196 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2 ERROR 2025-06-26 15:48:35,202 calibrate.py process_logs():3542 [1] Error processing biolume: biolume has no orig_data - likely a missing or zero-sized .log file in missionlogs/2010.257.11 ERROR 2025-06-26 15:48:35,203 calibrate.py process_logs():3542 [1] Error processing lopc: lopc has no time coordinate - likely an incomplete lopc.nc file in missionlogs/2010.257.11 ERROR 2025-06-26 15:48:35,203 calibrate.py process_logs():3542 [1] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2010.257.11 INFO 2025-06-26 15:48:35,212 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2010.257.11/dorado_2010.257.11_cal.nc INFO 2025-06-26 15:48:35,258 calibrate.py write_netcdf():3512 [1] Data variables written: ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_salinity_onboard, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_salinity_onboard, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, hs2_bbp420, hs2_bbp700, hs2_depth, hs2_fl700, hs2_time, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, tailcone_propRpm, tailcone_time, time INFO 2025-06-26 15:48:35,263 process.py align():251 [1] Alignment steps for 2010.257.11 INFO 2025-06-26 15:48:35,285 align.py process_cal():139 [1] Processing dorado_2010.257.11_cal.nc from /data/auv_data/dorado/missionnetcdfs/2010.257.11 INFO 2025-06-26 15:48:35,292 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 15:48:35,294 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 15:48:35,307 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 15:48:35,309 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 15:48:35,322 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 15:48:35,323 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 15:48:35,331 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-06-26 15:48:35,331 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-06-26 15:48:35,336 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 15:48:35,337 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 15:48:35,349 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2010.257.11_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:48:35,351 align.py process_cal():249 [1] hs2_bbp420: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:48:35,363 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2010.257.11_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:48:35,365 align.py process_cal():249 [1] hs2_bbp700: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:48:35,377 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2010.257.11_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:48:35,379 align.py process_cal():249 [1] hs2_fl700: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:48:35,391 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.257.11_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:48:35,393 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:48:35,405 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.257.11_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:48:35,407 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:48:35,420 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.257.11_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:48:35,422 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:48:35,434 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.257.11_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:48:35,436 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:48:35,448 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.257.11_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:48:35,450 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:48:35,462 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.257.11_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:48:35,464 align.py process_cal():249 [1] ctd1_salinity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:48:35,476 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.257.11_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:48:35,478 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:48:35,490 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.257.11_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:48:35,492 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:48:35,504 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.257.11_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:48:35,506 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:48:35,518 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.257.11_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:48:35,520 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:48:35,532 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.257.11_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:48:35,534 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:48:35,547 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.257.11_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:48:35,549 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:48:35,562 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.257.11_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:48:35,564 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:48:35,577 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.257.11_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:48:35,579 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:48:35,592 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.257.11_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:48:35,594 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:48:35,607 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.257.11_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:48:35,609 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:48:35,622 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.257.11_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:48:35,624 align.py process_cal():249 [1] ctd2_salinity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:48:35,638 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.257.11_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:48:35,641 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:48:35,654 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.257.11_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:48:35,656 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:48:35,672 align.py process_cal():249 [1] isus_nitrate: instrument_sample_rate_hz = 0.78 INFO 2025-06-26 15:48:35,686 align.py process_cal():249 [1] isus_temp: instrument_sample_rate_hz = 0.78 INFO 2025-06-26 15:48:35,700 align.py process_cal():249 [1] isus_quality: instrument_sample_rate_hz = 0.78 INFO 2025-06-26 15:48:35,715 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 4.97 INFO 2025-06-26 15:48:35,728 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2010.257.11/dorado_2010.257.11_align.nc INFO 2025-06-26 15:48:35,769 align.py write_netcdf():342 [1] Data variables written: ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_salinity_onboard, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_salinity_onboard, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, hs2_bbp420, hs2_bbp700, hs2_depth, hs2_fl700, hs2_latitude, hs2_longitude, hs2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-06-26 15:48:35,771 process.py resample():273 [1] Resampling steps for 2010.257.11 INFO 2025-06-26 15:48:35,771 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-06-26 15:48:35,791 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2010.257.11/dorado_2010.257.11_align.nc mission netCDF file INFO 2025-06-26 15:48:35,795 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2010.257.11/dorado_2010.257.11_align.nc mission netCDF file INFO 2025-06-26 15:48:35,796 resample.py get_mission_start_end():1145 [1] navigation: 2010-09-14T23:07:00.182490880 to 2010-09-14T23:31:15.172817152 (0 days 00:00:00.079994624 before mission_end) INFO 2025-06-26 15:48:35,798 resample.py get_mission_start_end():1145 [1] hs2 : 2010-09-14T23:06:16.145507584 to 2010-09-14T23:31:15.222813952 (0 days 00:00:00.029997824 before mission_end) INFO 2025-06-26 15:48:35,799 resample.py get_mission_start_end():1145 [1] ctd1 : 2010-09-14T23:06:37.464047104 to 2010-09-14T23:31:15.172817152 (0 days 00:00:00.079994624 before mission_end) INFO 2025-06-26 15:48:35,800 resample.py get_mission_start_end():1145 [1] ctd2 : 2010-09-14T23:06:37.424049920 to 2010-09-14T23:31:15.132819968 (0 days 00:00:00.119991808 before mission_end) INFO 2025-06-26 15:48:35,802 resample.py get_mission_start_end():1145 [1] isus : 2010-09-14T23:07:26.780668672 to 2010-09-14T23:31:14.492864000 (0 days 00:00:00.759947776 before mission_end) INFO 2025-06-26 15:48:35,803 resample.py get_mission_start_end():1145 [1] tailcone : 2010-09-14T23:06:11.845802240 to 2010-09-14T23:31:15.252811776 (0 days 00:00:00 before mission_end) INFO 2025-06-26 15:48:35,804 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2010.257.11/dorado_2010.257.11_align.nc mission netCDF file INFO 2025-06-26 15:48:35,804 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-06-26 15:48:35,847 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-06-26 15:48:35,857 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-06-26 15:48:35,867 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-06-26 15:48:35,877 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 15:48:35,887 resample.py resample_variable():1031 [1] Resampling hs2_bbp420 with frequency 1S following 3 point median filter INFO 2025-06-26 15:48:35,896 resample.py resample_variable():1031 [1] Resampling hs2_bbp700 with frequency 1S following 3 point median filter INFO 2025-06-26 15:48:35,905 resample.py resample_variable():1031 [1] Resampling hs2_fl700 with frequency 1S following 3 point median filter INFO 2025-06-26 15:48:35,914 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 15:48:35,923 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 15:48:35,931 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 15:48:35,940 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 15:48:35,948 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 15:48:35,957 resample.py resample_variable():1031 [1] Resampling ctd1_salinity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 15:48:35,968 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-06-26 15:48:35,979 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-06-26 15:48:35,990 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-06-26 15:48:36,001 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-06-26 15:48:36,014 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 15:48:36,026 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 15:48:36,038 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 15:48:36,050 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 15:48:36,062 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 15:48:36,072 resample.py resample_variable():1031 [1] Resampling ctd2_salinity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 15:48:36,081 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-06-26 15:48:36,089 resample.py resample_variable():1031 [1] Resampling isus_nitrate with frequency 1S following 3 point median filter INFO 2025-06-26 15:48:36,098 resample.py resample_variable():1031 [1] Resampling isus_temp with frequency 1S following 3 point median filter INFO 2025-06-26 15:48:36,106 resample.py resample_variable():1031 [1] Resampling isus_quality with frequency 1S following 3 point median filter INFO 2025-06-26 15:48:36,116 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-06-26 15:48:36,216 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2010.257.11/dorado_2010.257.11_1S.nc INFO 2025-06-26 15:48:36,961 create_products.py gulper_odv():401 [1] No gulper times found for 2010.257.11 INFO 2025-06-26 15:48:36,961 process.py archive():337 [1] Archiving steps for 2010.257.11 INFO 2025-06-26 15:48:36,961 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2010.257.11/dorado_2010.257.11, BASE_PATH = /data/auv_data INFO 2025-06-26 15:48:36,962 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2010.257.11/dorado_2010.257.11 files to /Volumes/AUVCTD/surveys/2010/netcdf INFO 2025-06-26 15:48:36,963 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2010/netcdf/dorado_2010.257.11_1S.nc INFO 2025-06-26 15:48:36,971 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.257.11/dorado_2010.257.11_1S.nc /Volumes/AUVCTD/surveys/2010/netcdf done. INFO 2025-06-26 15:48:36,972 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2010/netcdf/dorado_2010.257.11_cal.nc INFO 2025-06-26 15:48:36,985 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.257.11/dorado_2010.257.11_cal.nc /Volumes/AUVCTD/surveys/2010/netcdf done. INFO 2025-06-26 15:48:36,986 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2010/netcdf/dorado_2010.257.11_align.nc INFO 2025-06-26 15:48:37,000 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.257.11/dorado_2010.257.11_align.nc /Volumes/AUVCTD/surveys/2010/netcdf done. INFO 2025-06-26 15:48:37,008 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.257.11/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010257/2010.257.11 done. INFO 2025-06-26 15:48:37,016 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.257.11/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010257/2010.257.11 done. INFO 2025-06-26 15:48:37,021 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.257.11/gps.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010257/2010.257.11 done. INFO 2025-06-26 15:48:37,028 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.257.11/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010257/2010.257.11 done. INFO 2025-06-26 15:48:37,039 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.257.11/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010257/2010.257.11 done. INFO 2025-06-26 15:48:37,043 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.257.11/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010257/2010.257.11 done. INFO 2025-06-26 15:48:37,049 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.257.11/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010257/2010.257.11 done. INFO 2025-06-26 15:48:37,055 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.257.11/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010257/2010.257.11 done. INFO 2025-06-26 15:48:37,060 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.257.11/lopc.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010257/2010.257.11 done. INFO 2025-06-26 15:48:37,060 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-06-26 15:48:37,061 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.257.11/dorado_2010.257.11_processing.log /Volumes/AUVCTD/surveys/2010/netcdf