INFO 2025-06-26 15:48:07,817 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2005 --end_year 2014 --num_cores 1 -v --noinput --clobber INFO 2025-06-26 15:48:07,817 process.py process_mission():434 [1] dorado_info[mission]["comment"] = ESP drifter missions out at station 67-70 with Flyer doing casts and ESP drifting south toward Davidson Seamount - no gulpers (Frederic sent me note about survey grouping) Faulty parosci lead to several mission depth aborts at beginning of this set of volume surveys - ctdToUse = ctd1 INFO 2025-06-26 15:48:07,817 process.py process_mission():449 [1] Processing AUVCTD mission 2010.257.05 by user docker_user on host eae60d30a712 INFO 2025-06-26 15:48:07,817 process.py download_process():165 [1] Download and processing steps for 2010.257.05 INFO 2025-06-26 15:48:07,817 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2010/2010257/2010.257.05 INFO 2025-06-26 15:48:07,817 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2010/2010257/2010.257.05 to /data/auv_data/dorado/missionlogs/2010.257.05 INFO 2025-06-26 15:48:08,218 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2010.257.05 INFO 2025-06-26 15:48:08,219 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.257.05/ctdDriver.log (19115 bytes) INFO 2025-06-26 15:48:08,227 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.257.05/ctdDriver2.log (19007 bytes) INFO 2025-06-26 15:48:08,234 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.257.05/gps.log (5828 bytes) INFO 2025-06-26 15:48:08,242 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.257.05/hydroscatlog.log (21526 bytes) INFO 2025-06-26 15:48:08,251 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.257.05/navigation.log (22782 bytes) INFO 2025-06-26 15:48:08,265 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.257.05/isuslog.log (789 bytes) INFO 2025-06-26 15:48:08,269 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/dorado/missionlogs/2010.257.05/isuslog.log: [ 2 3 4 5 6 7 9 10] INFO 2025-06-26 15:48:08,269 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.257.05/parosci.log (26198 bytes) INFO 2025-06-26 15:48:08,275 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.257.05/tailCone.log (15787 bytes) INFO 2025-06-26 15:48:08,283 logs2netcdfs.py download_process_logs():807 [1] Time to process: 0.06 seconds INFO 2025-06-26 15:48:08,283 process.py download_process():198 [1] Processing file /data/auv_data/dorado/missionlogs/2010.257.05/lopc.bin (55000 bytes) INFO 2025-06-26 15:48:08,283 lopcToNetCDF.py main():2297 [1] Processing begun: Thu Jun 26 15:48:08 2025 INFO 2025-06-26 15:48:08,283 lopcToNetCDF.py constructTimestampList():1296 [1] parosci_nc = /data/auv_data/dorado/missionnetcdfs/2010.257.05/parosci.nc INFO 2025-06-26 15:48:08,283 lopcToNetCDF.py constructTimestampList():1297 [1] Using NetCDF4 to get start and end epoch seconds for this mission from this URL: INFO 2025-06-26 15:48:08,283 lopcToNetCDF.py constructTimestampList():1300 [1] /data/auv_data/dorado/missionnetcdfs/2010.257.05/parosci.nc INFO 2025-06-26 15:48:08,285 lopcToNetCDF.py constructTimestampList():1317 [1] From associated parosci.nc file: sensor_on_time = 1284501948.9, sensor_off_time = 1284502016.0 INFO 2025-06-26 15:48:08,285 lopcToNetCDF.py constructTimestampList():1322 [1] Duration is 67 seconds. Expecting to read 134 L frames from the lopc.bin file. INFO 2025-06-26 15:48:08,285 lopcToNetCDF.py constructTimestampList():1330 [1] recCount not passed in, assuming we'll have 134 records from the lopc.bin file. INFO 2025-06-26 15:48:08,286 lopcToNetCDF.py main():2321 [1] Examined sibling parosci.nc file to find startTime = 2010-09-14 22:05:48 Z and endTime = 2010-09-14 22:06:55 Z with 134 records expected to be read from lopc.bin INFO 2025-06-26 15:48:08,286 lopcToNetCDF.py unpackLOPCbin():723 [1] >>> Unpacking LOPC data from /data/auv_data/dorado/missionlogs/2010.257.05/lopc.bin INFO 2025-06-26 15:48:08,286 lopcToNetCDF.py unpackLOPCbin():724 [1] >>> Will write to NetCDF file /data/auv_data/dorado/missionnetcdfs/2010.257.05/lopc.nc INFO 2025-06-26 15:48:08,286 lopcToNetCDF.py openNetCDFFile():1861 [1] Will output NetCDF file to /data/auv_data/dorado/missionnetcdfs/2010.257.05/lopc.nc INFO 2025-06-26 15:48:08,286 lopcToNetCDF.py openNetCDFFile():1887 [1] missionName = 2010.257.05 INFO 2025-06-26 15:48:08,287 lopcToNetCDF.py openNetCDFFile():1910 [1] Writing bin axis for len(self.dataStructure['binSizeList']) = 994 WARNING 2025-06-26 15:48:08,289 lopcToNetCDF.py readCframeData():665 [1] Unable to parse a float from the string cstr[:70] = A011400 WARNING 2025-06-26 15:48:08,289 lopcToNetCDF.py readCframeData():665 [1] Unable to parse a float from the string cstr[:70] = INFO 2025-06-26 15:48:08,327 lopcToNetCDF.py unpackLOPCbin():951 [1] L Frames sample M Frames ShortLFrame LBeforeMEnd MBeforeLEnd UnknownFrame Garbled L INFO 2025-06-26 15:48:08,327 lopcToNetCDF.py unpackLOPCbin():969 [1] Count Count Count Error Error Error Error Error INFO 2025-06-26 15:48:08,327 lopcToNetCDF.py unpackLOPCbin():987 [1] -------- -------- -------- ----------- ----------- ----------- ----------- ------------ INFO 2025-06-26 15:48:08,362 lopcToNetCDF.py main():2345 [1] >>> Done reading file. INFO 2025-06-26 15:48:08,362 lopcToNetCDF.py main():2346 [1] lFrameCount = 140, mFrameCount = 148 INFO 2025-06-26 15:48:08,363 lopcToNetCDF.py constructTimestampList():1296 [1] parosci_nc = /data/auv_data/dorado/missionnetcdfs/2010.257.05/parosci.nc INFO 2025-06-26 15:48:08,363 lopcToNetCDF.py constructTimestampList():1297 [1] Using NetCDF4 to get start and end epoch seconds for this mission from this URL: INFO 2025-06-26 15:48:08,363 lopcToNetCDF.py constructTimestampList():1300 [1] /data/auv_data/dorado/missionnetcdfs/2010.257.05/parosci.nc INFO 2025-06-26 15:48:08,364 lopcToNetCDF.py constructTimestampList():1317 [1] From associated parosci.nc file: sensor_on_time = 1284501948.9, sensor_off_time = 1284502016.0 INFO 2025-06-26 15:48:08,364 lopcToNetCDF.py constructTimestampList():1322 [1] Duration is 67 seconds. Expecting to read 134 L frames from the lopc.bin file. INFO 2025-06-26 15:48:08,364 lopcToNetCDF.py constructTimestampList():1330 [1] recCount not passed in, assuming we'll have 134 records from the lopc.bin file. INFO 2025-06-26 15:48:08,364 lopcToNetCDF.py constructTimestampList():1340 [1] Calling correctSampleCountList() with sampleCountList[0] = 15818 and len(sampleCountList) = 140 INFO 2025-06-26 15:48:08,364 lopcToNetCDF.py correctSampleCountList():1737 [1] Found overflows at indices: [] INFO 2025-06-26 15:48:08,365 lopcToNetCDF.py correctSampleCountList():1745 [1] Original sampleCountList = [15818 15819 15820 15821 15822 15876 15877 15878 15879 15880 15881 15882 15883 15884 15885 15886 15887 15888 15889 15890 15891 15892 15893 15894 15895 15896 15897 15898 15899 15900 15901 15902 15903 15904 15905 15906 15907 15908 15909 15910 15911 15912 15913 15914 15915 15916 15917 15918 15919 15920 15921 15922 15923 15924 15925 15926 15927 15928 15929 15930 15931 15932 15933 15934 15935 15936 15937 15938 15939 15940 15941 15942 15943 15944 15945 15946 15947 15948 15949 15950 15951 15952 15953 15954 15955 15956 15957 15958 15959 15960 15961 15962 15963 15964 15965 15966 15967 15968 15969 15970 15971 15972 15973 15974 15975 15976 15977 15978 15979 15980 15981 15982 15983 15984 15985 15986 15987 15988 15989 15990 15991 15992 15993 15994 15995 15996 15997 15998 15999 16000 16001 16002 16003 16004 16005 16006 16007 16008 16009 16010] INFO 2025-06-26 15:48:08,365 lopcToNetCDF.py correctSampleCountList():1746 [1] Found 0 0 values at indices: [] INFO 2025-06-26 15:48:08,365 lopcToNetCDF.py correctSampleCountList():1779 [1] Found 0 stuck values at indices: [] INFO 2025-06-26 15:48:08,365 lopcToNetCDF.py deSpike():1588 [1] d_sampleCountList = [ 1 1 1 1 54 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1] INFO 2025-06-26 15:48:08,366 lopcToNetCDF.py deSpike():1590 [1] Found 0 spike indicators at indices: [] INFO 2025-06-26 15:48:08,366 lopcToNetCDF.py correctSampleCountList():1805 [1] After despike() sampleCountList = [15818 15819 15820 15821 15822 15876 15877 15878 15879 15880 15881 15882 15883 15884 15885 15886 15887 15888 15889 15890 15891 15892 15893 15894 15895 15896 15897 15898 15899 15900 15901 15902 15903 15904 15905 15906 15907 15908 15909 15910 15911 15912 15913 15914 15915 15916 15917 15918 15919 15920 15921 15922 15923 15924 15925 15926 15927 15928 15929 15930 15931 15932 15933 15934 15935 15936 15937 15938 15939 15940 15941 15942 15943 15944 15945 15946 15947 15948 15949 15950 15951 15952 15953 15954 15955 15956 15957 15958 15959 15960 15961 15962 15963 15964 15965 15966 15967 15968 15969 15970 15971 15972 15973 15974 15975 15976 15977 15978 15979 15980 15981 15982 15983 15984 15985 15986 15987 15988 15989 15990 15991 15992 15993 15994 15995 15996 15997 15998 15999 16000 16001 16002 16003 16004 16005 16006 16007 16008 16009 16010] INFO 2025-06-26 15:48:08,366 lopcToNetCDF.py constructTimestampList():1347 [1] correctSampleCountList() returned correctedSampleCountList = [15818 15819 15820 15821 15822 15876 15877 15878 15879 15880 15881 15882 15883 15884 15885 15886 15887 15888 15889 15890 15891 15892 15893 15894 15895 15896 15897 15898 15899 15900 15901 15902 15903 15904 15905 15906 15907 15908 15909 15910 15911 15912 15913 15914 15915 15916 15917 15918 15919 15920 15921 15922 15923 15924 15925 15926 15927 15928 15929 15930 15931 15932 15933 15934 15935 15936 15937 15938 15939 15940 15941 15942 15943 15944 15945 15946 15947 15948 15949 15950 15951 15952 15953 15954 15955 15956 15957 15958 15959 15960 15961 15962 15963 15964 15965 15966 15967 15968 15969 15970 15971 15972 15973 15974 15975 15976 15977 15978 15979 15980 15981 15982 15983 15984 15985 15986 15987 15988 15989 15990 15991 15992 15993 15994 15995 15996 15997 15998 15999 16000 16001 16002 16003 16004 16005 16006 16007 16008 16009 16010] with len(correctedSampleCountList) = 140 INFO 2025-06-26 15:48:08,367 lopcToNetCDF.py constructTimestampList():1358 [1] Subtracting 15818 from all values of correctedSampleCountList INFO 2025-06-26 15:48:08,367 lopcToNetCDF.py constructTimestampList():1363 [1] Constructing timestampArray from instrument corrected sampleCount and constant deltaT = 0.500000 INFO 2025-06-26 15:48:08,367 lopcToNetCDF.py constructTimestampList():1368 [1] New re-zeroed correctedSampleCountList = [ 0. 0.5 1. 1.5 2. 29. 29.5 30. 30.5 31. 31.5 32. 32.5 33. 33.5 34. 34.5 35. 35.5 36. 36.5 37. 37.5 38. 38.5 39. 39.5 40. 40.5 41. 41.5 42. 42.5 43. 43.5 44. 44.5 45. 45.5 46. 46.5 47. 47.5 48. 48.5 49. 49.5 50. 50.5 51. 51.5 52. 52.5 53. 53.5 54. 54.5 55. 55.5 56. 56.5 57. 57.5 58. 58.5 59. 59.5 60. 60.5 61. 61.5 62. 62.5 63. 63.5 64. 64.5 65. 65.5 66. 66.5 67. 67.5 68. 68.5 69. 69.5 70. 70.5 71. 71.5 72. 72.5 73. 73.5 74. 74.5 75. 75.5 76. 76.5 77. 77.5 78. 78.5 79. 79.5 80. 80.5 81. 81.5 82. 82.5 83. 83.5 84. 84.5 85. 85.5 86. 86.5 87. 87.5 88. 88.5 89. 89.5 90. 90.5 91. 91.5 92. 92.5 93. 93.5 94. 94.5 95. 95.5 96. ] INFO 2025-06-26 15:48:08,368 lopcToNetCDF.py constructTimestampList():1379 [1] timestampArray = [1.28450195e+09 1.28450195e+09 1.28450195e+09 1.28450195e+09 1.28450195e+09 1.28450198e+09 1.28450198e+09 1.28450198e+09 1.28450198e+09 1.28450198e+09 1.28450198e+09 1.28450198e+09 1.28450198e+09 1.28450198e+09 1.28450198e+09 1.28450198e+09 1.28450198e+09 1.28450198e+09 1.28450198e+09 1.28450198e+09 1.28450199e+09 1.28450199e+09 1.28450199e+09 1.28450199e+09 1.28450199e+09 1.28450199e+09 1.28450199e+09 1.28450199e+09 1.28450199e+09 1.28450199e+09 1.28450199e+09 1.28450199e+09 1.28450199e+09 1.28450199e+09 1.28450199e+09 1.28450199e+09 1.28450199e+09 1.28450199e+09 1.28450199e+09 1.28450199e+09 1.28450200e+09 1.28450200e+09 1.28450200e+09 1.28450200e+09 1.28450200e+09 1.28450200e+09 1.28450200e+09 1.28450200e+09 1.28450200e+09 1.28450200e+09 1.28450200e+09 1.28450200e+09 1.28450200e+09 1.28450200e+09 1.28450200e+09 1.28450200e+09 1.28450200e+09 1.28450200e+09 1.28450200e+09 1.28450200e+09 1.28450201e+09 1.28450201e+09 1.28450201e+09 1.28450201e+09 1.28450201e+09 1.28450201e+09 1.28450201e+09 1.28450201e+09 1.28450201e+09 1.28450201e+09 1.28450201e+09 1.28450201e+09 1.28450201e+09 1.28450201e+09 1.28450201e+09 1.28450201e+09 1.28450201e+09 1.28450201e+09 1.28450201e+09 1.28450201e+09 1.28450202e+09 1.28450202e+09 1.28450202e+09 1.28450202e+09 1.28450202e+09 1.28450202e+09 1.28450202e+09 1.28450202e+09 1.28450202e+09 1.28450202e+09 1.28450202e+09 1.28450202e+09 1.28450202e+09 1.28450202e+09 1.28450202e+09 1.28450202e+09 1.28450202e+09 1.28450202e+09 1.28450202e+09 1.28450202e+09 1.28450203e+09 1.28450203e+09 1.28450203e+09 1.28450203e+09 1.28450203e+09 1.28450203e+09 1.28450203e+09 1.28450203e+09 1.28450203e+09 1.28450203e+09 1.28450203e+09 1.28450203e+09 1.28450203e+09 1.28450203e+09 1.28450203e+09 1.28450203e+09 1.28450203e+09 1.28450203e+09 1.28450203e+09 1.28450203e+09 1.28450204e+09 1.28450204e+09 1.28450204e+09 1.28450204e+09 1.28450204e+09 1.28450204e+09 1.28450204e+09 1.28450204e+09 1.28450204e+09 1.28450204e+09 1.28450204e+09 1.28450204e+09 1.28450204e+09 1.28450204e+09 1.28450204e+09 1.28450204e+09 1.28450204e+09 1.28450204e+09 1.28450204e+09 1.28450204e+09] INFO 2025-06-26 15:48:08,370 lopcToNetCDF.py constructTimestampList():1380 [1] timestampArray[:2] = [1284501948.9 1284501949.4, ..., timestampArray[-2:] = 1284502044.4 1284502044.9] INFO 2025-06-26 15:48:08,370 lopcToNetCDF.py constructTimestampList():1389 [1] timestampList[:2] = [np.float64(1284501948.8539941), np.float64(1284501949.3539941)], ..., timestampList[-2:] = [np.float64(1284502044.3539941), np.float64(1284502044.8539941)]] INFO 2025-06-26 15:48:08,370 lopcToNetCDF.py constructTimestampList():1394 [1] Subsampling correctedSampleCountList (len = 140) according to what got written to the netCDF file by the binning interval INFO 2025-06-26 15:48:08,370 lopcToNetCDF.py constructTimestampList():1399 [1] lFrameCountWrittenList[:2] = [20, 41], ... lFrameCountWrittenList[-2:] = [104, 125] INFO 2025-06-26 15:48:08,370 lopcToNetCDF.py constructTimestampList():1420 [1] len(subSampledCorrectedSampleCountList) = 6 INFO 2025-06-26 15:48:08,370 lopcToNetCDF.py constructTimestampList():1439 [1] len(timestampList) = 140 INFO 2025-06-26 15:48:08,370 lopcToNetCDF.py constructTimestampList():1440 [1] timestampList[:2] = [np.float64(1284501948.8539941), np.float64(1284501949.3539941)], ..., timestampList[-2:] = [np.float64(1284502044.3539941), np.float64(1284502044.8539941)]] INFO 2025-06-26 15:48:08,370 lopcToNetCDF.py constructTimestampList():1446 [1] Subsampling timestampList (len = 140) according to what got written to the netCDF file by the binning interval INFO 2025-06-26 15:48:08,370 lopcToNetCDF.py constructTimestampList():1457 [1] Taking indices [[np.int32(19), np.int32(40)] ... [np.int32(103), np.int32(124)]] from timestampList to create subSampledTimestampList INFO 2025-06-26 15:48:08,370 lopcToNetCDF.py constructTimestampList():1463 [1] len(subSampledTimestampList) = 6 INFO 2025-06-26 15:48:08,370 lopcToNetCDF.py constructTimestampList():1477 [1] Finding elements of cFrameEsecsList that != -9999 INFO 2025-06-26 15:48:08,371 lopcToNetCDF.py closeNetCDFFile():2096 [1] Writing time axis for len(tsList) = 6 INFO 2025-06-26 15:48:08,371 lopcToNetCDF.py closeNetCDFFile():2099 [1] tsList[:1] = [np.float64(1284501984.8539941)], ..., tsList[-2:] = [np.float64(1284502026.8539941), np.float64(1284502037.3539941)] INFO 2025-06-26 15:48:08,372 lopcToNetCDF.py closeNetCDFFile():2100 [1] Begin time = 2010-09-14 22:06:24 Z INFO 2025-06-26 15:48:08,372 lopcToNetCDF.py closeNetCDFFile():2103 [1] End time = 2010-09-14 22:07:17 Z INFO 2025-06-26 15:48:08,372 lopcToNetCDF.py closeNetCDFFile():2107 [1] Writing time axis for len(cFrameEsecsList) = 6 INFO 2025-06-26 15:48:08,372 lopcToNetCDF.py closeNetCDFFile():2111 [1] cFrameEsecsList[:1] = [1.28450201e+09], ..., cFrameEsecsList[-2:] = [1.28450201e+09 1.28450201e+09] INFO 2025-06-26 15:48:08,372 lopcToNetCDF.py closeNetCDFFile():2116 [1] Begin time = 2010-09-14 22:06:51 Z INFO 2025-06-26 15:48:08,372 lopcToNetCDF.py closeNetCDFFile():2120 [1] End time = 2010-09-14 22:06:51 Z INFO 2025-06-26 15:48:08,376 lopcToNetCDF.py main():2381 [1] Created file: /data/auv_data/dorado/missionnetcdfs/2010.257.05/lopc.nc INFO 2025-06-26 15:48:08,376 lopcToNetCDF.py main():2384 [1] Processing finished: Thu Jun 26 15:48:08 2025 Elapsed processing time from start of processing = 0 seconds INFO 2025-06-26 15:48:08,376 process.py calibrate():227 [1] Calibration steps for 2010.257.05 WARNING 2025-06-26 15:48:08,430 calibrate.py _navigation_process():1588 [1] No positive depths found in 2010.257.05/navigation.nc INFO 2025-06-26 15:48:08,433 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-06-26 15:48:08,434 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-06-26 15:48:08,692 calibrate.py _nudge_pos():1862 [1] 18: - - - 4 0.01 - - INFO 2025-06-26 15:48:08,692 calibrate.py _nudge_pos():1868 [1] Points in final series = 88 WARNING 2025-06-26 15:48:08,696 calibrate.py _depth_process():2193 [1] Expected sample_rate to be 10 Hz, instead it's 8.33 Hz INFO 2025-06-26 15:48:08,714 calibrate.py _geometric_depth_correction():3423 [1] hs2: d_beg_time_diff: 6 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 15:48:08,738 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 19 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 15:48:08,742 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 19 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 15:48:08,743 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2010.257.05/ctd1.nc INFO 2025-06-26 15:48:08,744 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd1_salinity values to NaN INFO 2025-06-26 15:48:08,744 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-06-26 15:48:08,744 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1 INFO 2025-06-26 15:48:08,760 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 19 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 15:48:08,764 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 19 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 15:48:08,765 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2010.257.05/ctd2.nc INFO 2025-06-26 15:48:08,766 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd2_salinity values to NaN INFO 2025-06-26 15:48:08,766 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-06-26 15:48:08,766 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2 ERROR 2025-06-26 15:48:08,773 calibrate.py process_logs():3542 [1] Error processing biolume: biolume has no orig_data - likely a missing or zero-sized .log file in missionlogs/2010.257.05 ERROR 2025-06-26 15:48:08,782 calibrate.py process_logs():3542 [1] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2010.257.05 INFO 2025-06-26 15:48:08,786 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2010.257.05/dorado_2010.257.05_cal.nc INFO 2025-06-26 15:48:08,826 calibrate.py write_netcdf():3512 [1] Data variables written: ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_salinity_onboard, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_salinity_onboard, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, hs2_bbp420, hs2_bbp700, hs2_depth, hs2_fl700, hs2_time, isus_nitrate, isus_quality, isus_temp, isus_time, lopc_LCcount, lopc_countListSum, lopc_flowSpeed, lopc_nonTransCount, lopc_time, lopc_transCount, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, tailcone_propRpm, tailcone_time, time INFO 2025-06-26 15:48:08,830 process.py align():251 [1] Alignment steps for 2010.257.05 INFO 2025-06-26 15:48:08,851 align.py process_cal():139 [1] Processing dorado_2010.257.05_cal.nc from /data/auv_data/dorado/missionnetcdfs/2010.257.05 INFO 2025-06-26 15:48:08,854 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 15:48:08,856 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.06 INFO 2025-06-26 15:48:08,865 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 15:48:08,866 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.06 INFO 2025-06-26 15:48:08,873 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 15:48:08,875 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.06 INFO 2025-06-26 15:48:08,879 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-06-26 15:48:08,879 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-06-26 15:48:08,882 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 15:48:08,884 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.06 INFO 2025-06-26 15:48:08,891 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2010.257.05_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:48:08,893 align.py process_cal():249 [1] hs2_bbp420: instrument_sample_rate_hz = 4.01 INFO 2025-06-26 15:48:08,901 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2010.257.05_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:48:08,902 align.py process_cal():249 [1] hs2_bbp700: instrument_sample_rate_hz = 4.01 INFO 2025-06-26 15:48:08,910 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2010.257.05_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:48:08,911 align.py process_cal():249 [1] hs2_fl700: instrument_sample_rate_hz = 4.01 INFO 2025-06-26 15:48:08,919 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.257.05_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:48:08,921 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:48:08,929 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.257.05_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:48:08,930 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:48:08,938 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.257.05_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:48:08,940 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:48:08,948 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.257.05_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:48:08,950 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:48:08,958 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.257.05_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:48:08,960 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:48:08,968 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.257.05_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:48:08,970 align.py process_cal():249 [1] ctd1_salinity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:48:08,978 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.257.05_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:48:08,980 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:48:08,988 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.257.05_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:48:08,989 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:48:08,997 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.257.05_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:48:08,999 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:48:09,007 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.257.05_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:48:09,009 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:48:09,017 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.257.05_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:48:09,018 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:48:09,027 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.257.05_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:48:09,028 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:48:09,037 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.257.05_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:48:09,039 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:48:09,049 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.257.05_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:48:09,051 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:48:09,060 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.257.05_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:48:09,062 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:48:09,070 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.257.05_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:48:09,072 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:48:09,081 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.257.05_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:48:09,082 align.py process_cal():249 [1] ctd2_salinity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:48:09,091 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.257.05_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:48:09,093 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:48:09,101 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.257.05_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:48:09,103 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:48:09,113 align.py process_cal():249 [1] isus_nitrate: instrument_sample_rate_hz = 1.06 INFO 2025-06-26 15:48:09,125 align.py process_cal():249 [1] isus_temp: instrument_sample_rate_hz = 1.06 INFO 2025-06-26 15:48:09,136 align.py process_cal():249 [1] isus_quality: instrument_sample_rate_hz = 1.06 INFO 2025-06-26 15:48:09,147 align.py process_cal():249 [1] lopc_countListSum: instrument_sample_rate_hz = 0.10 INFO 2025-06-26 15:48:09,160 align.py process_cal():249 [1] lopc_transCount: instrument_sample_rate_hz = 0.10 INFO 2025-06-26 15:48:09,171 align.py process_cal():249 [1] lopc_nonTransCount: instrument_sample_rate_hz = 0.10 INFO 2025-06-26 15:48:09,183 align.py process_cal():249 [1] lopc_LCcount: instrument_sample_rate_hz = 0.10 INFO 2025-06-26 15:48:09,195 align.py process_cal():249 [1] lopc_flowSpeed: instrument_sample_rate_hz = 0.10 INFO 2025-06-26 15:48:09,208 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 4.86 INFO 2025-06-26 15:48:09,217 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2010.257.05/dorado_2010.257.05_align.nc INFO 2025-06-26 15:48:09,259 align.py write_netcdf():342 [1] Data variables written: ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_salinity_onboard, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_salinity_onboard, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, hs2_bbp420, hs2_bbp700, hs2_depth, hs2_fl700, hs2_latitude, hs2_longitude, hs2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, lopc_LCcount, lopc_countListSum, lopc_depth, lopc_flowSpeed, lopc_latitude, lopc_longitude, lopc_nonTransCount, lopc_time, lopc_transCount, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-06-26 15:48:09,261 process.py resample():273 [1] Resampling steps for 2010.257.05 INFO 2025-06-26 15:48:09,262 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-06-26 15:48:09,283 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2010.257.05/dorado_2010.257.05_align.nc mission netCDF file INFO 2025-06-26 15:48:09,287 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2010.257.05/dorado_2010.257.05_align.nc mission netCDF file INFO 2025-06-26 15:48:09,288 resample.py get_mission_start_end():1145 [1] navigation: 2010-09-14T22:06:38.690580224 to 2010-09-14T22:06:55.899401216 (0 days 00:00:21.454593024 before mission_end) INFO 2025-06-26 15:48:09,289 resample.py get_mission_start_end():1145 [1] hs2 : 2010-09-14T22:05:55.323550976 to 2010-09-14T22:06:55.869403392 (0 days 00:00:21.484590848 before mission_end) INFO 2025-06-26 15:48:09,290 resample.py get_mission_start_end():1145 [1] ctd1 : 2010-09-14T22:06:08.152672000 to 2010-09-14T22:06:55.879402752 (0 days 00:00:21.474591488 before mission_end) INFO 2025-06-26 15:48:09,292 resample.py get_mission_start_end():1145 [1] ctd2 : 2010-09-14T22:06:08.382656256 to 2010-09-14T22:06:55.869403392 (0 days 00:00:21.484590848 before mission_end) INFO 2025-06-26 15:48:09,293 resample.py get_mission_start_end():1145 [1] isus : 2010-09-14T22:06:48.179929856 to 2010-09-14T22:06:55.729412864 (0 days 00:00:21.624581376 before mission_end) INFO 2025-06-26 15:48:09,294 resample.py get_mission_start_end():1145 [1] lopc : 2010-09-14T22:06:24.853994240 to 2010-09-14T22:07:17.353994240 (0 days 00:00:00 before mission_end) INFO 2025-06-26 15:48:09,295 resample.py get_mission_start_end():1145 [1] tailcone : 2010-09-14T22:05:50.603874304 to 2010-09-14T22:06:55.799407872 (0 days 00:00:21.554586368 before mission_end) INFO 2025-06-26 15:48:09,296 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2010.257.05/dorado_2010.257.05_align.nc mission netCDF file INFO 2025-06-26 15:48:09,296 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-06-26 15:48:09,323 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-06-26 15:48:09,331 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-06-26 15:48:09,338 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-06-26 15:48:09,346 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 15:48:09,354 resample.py resample_variable():1031 [1] Resampling hs2_bbp420 with frequency 1S following 3 point median filter INFO 2025-06-26 15:48:09,362 resample.py resample_variable():1031 [1] Resampling hs2_bbp700 with frequency 1S following 3 point median filter INFO 2025-06-26 15:48:09,369 resample.py resample_variable():1031 [1] Resampling hs2_fl700 with frequency 1S following 3 point median filter INFO 2025-06-26 15:48:09,376 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 15:48:09,383 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 15:48:09,389 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 15:48:09,395 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 15:48:09,402 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 15:48:09,408 resample.py resample_variable():1031 [1] Resampling ctd1_salinity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 15:48:09,414 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-06-26 15:48:09,421 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-06-26 15:48:09,427 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-06-26 15:48:09,433 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-06-26 15:48:09,441 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 15:48:09,449 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 15:48:09,456 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 15:48:09,463 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 15:48:09,470 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 15:48:09,477 resample.py resample_variable():1031 [1] Resampling ctd2_salinity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 15:48:09,484 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-06-26 15:48:09,492 resample.py resample_variable():1031 [1] Resampling isus_nitrate with frequency 1S following 3 point median filter INFO 2025-06-26 15:48:09,500 resample.py resample_variable():1031 [1] Resampling isus_temp with frequency 1S following 3 point median filter INFO 2025-06-26 15:48:09,507 resample.py resample_variable():1031 [1] Resampling isus_quality with frequency 1S following 3 point median filter INFO 2025-06-26 15:48:09,516 resample.py resample_variable():1031 [1] Resampling lopc_countListSum with frequency 1S following 3 point median filter INFO 2025-06-26 15:48:09,524 resample.py resample_variable():1031 [1] Resampling lopc_transCount with frequency 1S following 3 point median filter INFO 2025-06-26 15:48:09,532 resample.py resample_variable():1031 [1] Resampling lopc_nonTransCount with frequency 1S following 3 point median filter INFO 2025-06-26 15:48:09,539 resample.py resample_variable():1031 [1] Resampling lopc_LCcount with frequency 1S following 3 point median filter INFO 2025-06-26 15:48:09,547 resample.py resample_variable():1031 [1] Resampling lopc_flowSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 15:48:09,556 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-06-26 15:48:09,664 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2010.257.05/dorado_2010.257.05_1S.nc INFO 2025-06-26 15:48:10,226 create_products.py gulper_odv():401 [1] No gulper times found for 2010.257.05 INFO 2025-06-26 15:48:10,226 process.py archive():337 [1] Archiving steps for 2010.257.05 INFO 2025-06-26 15:48:10,226 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2010.257.05/dorado_2010.257.05, BASE_PATH = /data/auv_data INFO 2025-06-26 15:48:10,227 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2010.257.05/dorado_2010.257.05 files to /Volumes/AUVCTD/surveys/2010/netcdf INFO 2025-06-26 15:48:10,227 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2010/netcdf/dorado_2010.257.05_1S.nc INFO 2025-06-26 15:48:10,233 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.257.05/dorado_2010.257.05_1S.nc /Volumes/AUVCTD/surveys/2010/netcdf done. INFO 2025-06-26 15:48:10,234 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2010/netcdf/dorado_2010.257.05_cal.nc INFO 2025-06-26 15:48:10,240 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.257.05/dorado_2010.257.05_cal.nc /Volumes/AUVCTD/surveys/2010/netcdf done. INFO 2025-06-26 15:48:10,241 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2010/netcdf/dorado_2010.257.05_align.nc INFO 2025-06-26 15:48:10,247 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.257.05/dorado_2010.257.05_align.nc /Volumes/AUVCTD/surveys/2010/netcdf done. INFO 2025-06-26 15:48:10,253 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.257.05/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010257/2010.257.05 done. INFO 2025-06-26 15:48:10,257 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.257.05/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010257/2010.257.05 done. INFO 2025-06-26 15:48:10,260 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.257.05/gps.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010257/2010.257.05 done. INFO 2025-06-26 15:48:10,265 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.257.05/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010257/2010.257.05 done. INFO 2025-06-26 15:48:10,268 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.257.05/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010257/2010.257.05 done. INFO 2025-06-26 15:48:10,273 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.257.05/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010257/2010.257.05 done. INFO 2025-06-26 15:48:10,277 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.257.05/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010257/2010.257.05 done. INFO 2025-06-26 15:48:10,281 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.257.05/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010257/2010.257.05 done. INFO 2025-06-26 15:48:10,287 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.257.05/lopc.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010257/2010.257.05 done. INFO 2025-06-26 15:48:10,287 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-06-26 15:48:10,288 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.257.05/dorado_2010.257.05_processing.log /Volumes/AUVCTD/surveys/2010/netcdf