INFO 2025-06-26 15:47:41,514 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2005 --end_year 2014 --num_cores 1 -v --noinput --clobber INFO 2025-06-26 15:47:41,514 process.py process_mission():434 [1] dorado_info[mission]["comment"] = ESP drifter missions out at station 67-70 with Flyer doing casts and ESP drifting south toward Davidson Seamount - no gulpers (Frederic sent me note about survey grouping) Faulty parosci lead to several mission depth aborts at beginning of this set of volume surveys - ctdToUse = ctd1 INFO 2025-06-26 15:47:41,514 process.py process_mission():449 [1] Processing AUVCTD mission 2010.257.00 by user docker_user on host eae60d30a712 INFO 2025-06-26 15:47:41,514 process.py download_process():165 [1] Download and processing steps for 2010.257.00 INFO 2025-06-26 15:47:41,514 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2010/2010257/2010.257.00 INFO 2025-06-26 15:47:41,514 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2010/2010257/2010.257.00 to /data/auv_data/dorado/missionlogs/2010.257.00 INFO 2025-06-26 15:47:41,907 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2010.257.00 INFO 2025-06-26 15:47:41,907 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.257.00/ctdDriver.log (22667 bytes) INFO 2025-06-26 15:47:41,917 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.257.00/ctdDriver2.log (28799 bytes) INFO 2025-06-26 15:47:41,925 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.257.00/gps.log (8204 bytes) INFO 2025-06-26 15:47:41,933 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.257.00/hydroscatlog.log (32950 bytes) INFO 2025-06-26 15:47:41,944 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.257.00/navigation.log (62666 bytes) INFO 2025-06-26 15:47:41,961 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.257.00/isuslog.log (789 bytes) INFO 2025-06-26 15:47:41,965 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.257.00/parosci.log (39206 bytes) INFO 2025-06-26 15:47:41,973 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.257.00/tailCone.log (23995 bytes) INFO 2025-06-26 15:47:41,984 logs2netcdfs.py download_process_logs():807 [1] Time to process: 0.08 seconds INFO 2025-06-26 15:47:41,984 process.py download_process():198 [1] Processing file /data/auv_data/dorado/missionlogs/2010.257.00/lopc.bin (96000 bytes) INFO 2025-06-26 15:47:41,984 lopcToNetCDF.py main():2297 [1] Processing begun: Thu Jun 26 15:47:41 2025 INFO 2025-06-26 15:47:41,985 lopcToNetCDF.py constructTimestampList():1296 [1] parosci_nc = /data/auv_data/dorado/missionnetcdfs/2010.257.00/parosci.nc INFO 2025-06-26 15:47:41,985 lopcToNetCDF.py constructTimestampList():1297 [1] Using NetCDF4 to get start and end epoch seconds for this mission from this URL: INFO 2025-06-26 15:47:41,985 lopcToNetCDF.py constructTimestampList():1300 [1] /data/auv_data/dorado/missionnetcdfs/2010.257.00/parosci.nc INFO 2025-06-26 15:47:41,986 lopcToNetCDF.py constructTimestampList():1317 [1] From associated parosci.nc file: sensor_on_time = 1284494011.6, sensor_off_time = 1284494111.8 INFO 2025-06-26 15:47:41,987 lopcToNetCDF.py constructTimestampList():1322 [1] Duration is 100 seconds. Expecting to read 200 L frames from the lopc.bin file. INFO 2025-06-26 15:47:41,987 lopcToNetCDF.py constructTimestampList():1330 [1] recCount not passed in, assuming we'll have 200 records from the lopc.bin file. INFO 2025-06-26 15:47:41,988 lopcToNetCDF.py main():2321 [1] Examined sibling parosci.nc file to find startTime = 2010-09-14 19:53:31 Z and endTime = 2010-09-14 19:55:11 Z with 200 records expected to be read from lopc.bin INFO 2025-06-26 15:47:41,988 lopcToNetCDF.py unpackLOPCbin():723 [1] >>> Unpacking LOPC data from /data/auv_data/dorado/missionlogs/2010.257.00/lopc.bin INFO 2025-06-26 15:47:41,988 lopcToNetCDF.py unpackLOPCbin():724 [1] >>> Will write to NetCDF file /data/auv_data/dorado/missionnetcdfs/2010.257.00/lopc.nc INFO 2025-06-26 15:47:41,989 lopcToNetCDF.py openNetCDFFile():1861 [1] Will output NetCDF file to /data/auv_data/dorado/missionnetcdfs/2010.257.00/lopc.nc INFO 2025-06-26 15:47:41,989 lopcToNetCDF.py openNetCDFFile():1887 [1] missionName = 2010.257.00 INFO 2025-06-26 15:47:41,989 lopcToNetCDF.py openNetCDFFile():1910 [1] Writing bin axis for len(self.dataStructure['binSizeList']) = 994 INFO 2025-06-26 15:47:42,052 lopcToNetCDF.py unpackLOPCbin():951 [1] L Frames sample M Frames ShortLFrame LBeforeMEnd MBeforeLEnd UnknownFrame Garbled L INFO 2025-06-26 15:47:42,052 lopcToNetCDF.py unpackLOPCbin():969 [1] Count Count Count Error Error Error Error Error INFO 2025-06-26 15:47:42,052 lopcToNetCDF.py unpackLOPCbin():987 [1] -------- -------- -------- ----------- ----------- ----------- ----------- ------------ INFO 2025-06-26 15:47:42,120 lopcToNetCDF.py main():2345 [1] >>> Done reading file. INFO 2025-06-26 15:47:42,120 lopcToNetCDF.py main():2346 [1] lFrameCount = 200, mFrameCount = 314 INFO 2025-06-26 15:47:42,120 lopcToNetCDF.py constructTimestampList():1296 [1] parosci_nc = /data/auv_data/dorado/missionnetcdfs/2010.257.00/parosci.nc INFO 2025-06-26 15:47:42,120 lopcToNetCDF.py constructTimestampList():1297 [1] Using NetCDF4 to get start and end epoch seconds for this mission from this URL: INFO 2025-06-26 15:47:42,121 lopcToNetCDF.py constructTimestampList():1300 [1] /data/auv_data/dorado/missionnetcdfs/2010.257.00/parosci.nc INFO 2025-06-26 15:47:42,123 lopcToNetCDF.py constructTimestampList():1317 [1] From associated parosci.nc file: sensor_on_time = 1284494011.6, sensor_off_time = 1284494111.8 INFO 2025-06-26 15:47:42,123 lopcToNetCDF.py constructTimestampList():1322 [1] Duration is 100 seconds. Expecting to read 200 L frames from the lopc.bin file. INFO 2025-06-26 15:47:42,123 lopcToNetCDF.py constructTimestampList():1330 [1] recCount not passed in, assuming we'll have 200 records from the lopc.bin file. INFO 2025-06-26 15:47:42,123 lopcToNetCDF.py constructTimestampList():1340 [1] Calling correctSampleCountList() with sampleCountList[0] = 1 and len(sampleCountList) = 200 INFO 2025-06-26 15:47:42,124 lopcToNetCDF.py correctSampleCountList():1737 [1] Found overflows at indices: [] INFO 2025-06-26 15:47:42,124 lopcToNetCDF.py correctSampleCountList():1745 [1] Original sampleCountList = [ 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200] INFO 2025-06-26 15:47:42,125 lopcToNetCDF.py correctSampleCountList():1746 [1] Found 0 0 values at indices: [] INFO 2025-06-26 15:47:42,125 lopcToNetCDF.py correctSampleCountList():1779 [1] Found 0 stuck values at indices: [] INFO 2025-06-26 15:47:42,125 lopcToNetCDF.py deSpike():1588 [1] d_sampleCountList = [1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1] INFO 2025-06-26 15:47:42,127 lopcToNetCDF.py deSpike():1590 [1] Found 0 spike indicators at indices: [] INFO 2025-06-26 15:47:42,127 lopcToNetCDF.py correctSampleCountList():1805 [1] After despike() sampleCountList = [ 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200] INFO 2025-06-26 15:47:42,128 lopcToNetCDF.py constructTimestampList():1347 [1] correctSampleCountList() returned correctedSampleCountList = [ 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200] with len(correctedSampleCountList) = 200 INFO 2025-06-26 15:47:42,129 lopcToNetCDF.py constructTimestampList():1358 [1] Subtracting 1 from all values of correctedSampleCountList INFO 2025-06-26 15:47:42,129 lopcToNetCDF.py constructTimestampList():1363 [1] Constructing timestampArray from instrument corrected sampleCount and constant deltaT = 0.500000 INFO 2025-06-26 15:47:42,130 lopcToNetCDF.py constructTimestampList():1368 [1] New re-zeroed correctedSampleCountList = [ 0. 0.5 1. 1.5 2. 2.5 3. 3.5 4. 4.5 5. 5.5 6. 6.5 7. 7.5 8. 8.5 9. 9.5 10. 10.5 11. 11.5 12. 12.5 13. 13.5 14. 14.5 15. 15.5 16. 16.5 17. 17.5 18. 18.5 19. 19.5 20. 20.5 21. 21.5 22. 22.5 23. 23.5 24. 24.5 25. 25.5 26. 26.5 27. 27.5 28. 28.5 29. 29.5 30. 30.5 31. 31.5 32. 32.5 33. 33.5 34. 34.5 35. 35.5 36. 36.5 37. 37.5 38. 38.5 39. 39.5 40. 40.5 41. 41.5 42. 42.5 43. 43.5 44. 44.5 45. 45.5 46. 46.5 47. 47.5 48. 48.5 49. 49.5 50. 50.5 51. 51.5 52. 52.5 53. 53.5 54. 54.5 55. 55.5 56. 56.5 57. 57.5 58. 58.5 59. 59.5 60. 60.5 61. 61.5 62. 62.5 63. 63.5 64. 64.5 65. 65.5 66. 66.5 67. 67.5 68. 68.5 69. 69.5 70. 70.5 71. 71.5 72. 72.5 73. 73.5 74. 74.5 75. 75.5 76. 76.5 77. 77.5 78. 78.5 79. 79.5 80. 80.5 81. 81.5 82. 82.5 83. 83.5 84. 84.5 85. 85.5 86. 86.5 87. 87.5 88. 88.5 89. 89.5 90. 90.5 91. 91.5 92. 92.5 93. 93.5 94. 94.5 95. 95.5 96. 96.5 97. 97.5 98. 98.5 99. 99.5] INFO 2025-06-26 15:47:42,132 lopcToNetCDF.py constructTimestampList():1379 [1] timestampArray = [1.28449401e+09 1.28449401e+09 1.28449401e+09 1.28449401e+09 1.28449401e+09 1.28449401e+09 1.28449401e+09 1.28449402e+09 1.28449402e+09 1.28449402e+09 1.28449402e+09 1.28449402e+09 1.28449402e+09 1.28449402e+09 1.28449402e+09 1.28449402e+09 1.28449402e+09 1.28449402e+09 1.28449402e+09 1.28449402e+09 1.28449402e+09 1.28449402e+09 1.28449402e+09 1.28449402e+09 1.28449402e+09 1.28449402e+09 1.28449402e+09 1.28449403e+09 1.28449403e+09 1.28449403e+09 1.28449403e+09 1.28449403e+09 1.28449403e+09 1.28449403e+09 1.28449403e+09 1.28449403e+09 1.28449403e+09 1.28449403e+09 1.28449403e+09 1.28449403e+09 1.28449403e+09 1.28449403e+09 1.28449403e+09 1.28449403e+09 1.28449403e+09 1.28449403e+09 1.28449403e+09 1.28449404e+09 1.28449404e+09 1.28449404e+09 1.28449404e+09 1.28449404e+09 1.28449404e+09 1.28449404e+09 1.28449404e+09 1.28449404e+09 1.28449404e+09 1.28449404e+09 1.28449404e+09 1.28449404e+09 1.28449404e+09 1.28449404e+09 1.28449404e+09 1.28449404e+09 1.28449404e+09 1.28449404e+09 1.28449404e+09 1.28449405e+09 1.28449405e+09 1.28449405e+09 1.28449405e+09 1.28449405e+09 1.28449405e+09 1.28449405e+09 1.28449405e+09 1.28449405e+09 1.28449405e+09 1.28449405e+09 1.28449405e+09 1.28449405e+09 1.28449405e+09 1.28449405e+09 1.28449405e+09 1.28449405e+09 1.28449405e+09 1.28449405e+09 1.28449405e+09 1.28449406e+09 1.28449406e+09 1.28449406e+09 1.28449406e+09 1.28449406e+09 1.28449406e+09 1.28449406e+09 1.28449406e+09 1.28449406e+09 1.28449406e+09 1.28449406e+09 1.28449406e+09 1.28449406e+09 1.28449406e+09 1.28449406e+09 1.28449406e+09 1.28449406e+09 1.28449406e+09 1.28449406e+09 1.28449406e+09 1.28449407e+09 1.28449407e+09 1.28449407e+09 1.28449407e+09 1.28449407e+09 1.28449407e+09 1.28449407e+09 1.28449407e+09 1.28449407e+09 1.28449407e+09 1.28449407e+09 1.28449407e+09 1.28449407e+09 1.28449407e+09 1.28449407e+09 1.28449407e+09 1.28449407e+09 1.28449407e+09 1.28449407e+09 1.28449407e+09 1.28449408e+09 1.28449408e+09 1.28449408e+09 1.28449408e+09 1.28449408e+09 1.28449408e+09 1.28449408e+09 1.28449408e+09 1.28449408e+09 1.28449408e+09 1.28449408e+09 1.28449408e+09 1.28449408e+09 1.28449408e+09 1.28449408e+09 1.28449408e+09 1.28449408e+09 1.28449408e+09 1.28449408e+09 1.28449408e+09 1.28449409e+09 1.28449409e+09 1.28449409e+09 1.28449409e+09 1.28449409e+09 1.28449409e+09 1.28449409e+09 1.28449409e+09 1.28449409e+09 1.28449409e+09 1.28449409e+09 1.28449409e+09 1.28449409e+09 1.28449409e+09 1.28449409e+09 1.28449409e+09 1.28449409e+09 1.28449409e+09 1.28449409e+09 1.28449409e+09 1.28449410e+09 1.28449410e+09 1.28449410e+09 1.28449410e+09 1.28449410e+09 1.28449410e+09 1.28449410e+09 1.28449410e+09 1.28449410e+09 1.28449410e+09 1.28449410e+09 1.28449410e+09 1.28449410e+09 1.28449410e+09 1.28449410e+09 1.28449410e+09 1.28449410e+09 1.28449410e+09 1.28449410e+09 1.28449410e+09 1.28449411e+09 1.28449411e+09 1.28449411e+09 1.28449411e+09 1.28449411e+09 1.28449411e+09 1.28449411e+09 1.28449411e+09 1.28449411e+09 1.28449411e+09 1.28449411e+09 1.28449411e+09 1.28449411e+09] INFO 2025-06-26 15:47:42,135 lopcToNetCDF.py constructTimestampList():1380 [1] timestampArray[:2] = [1284494011.6 1284494012.1, ..., timestampArray[-2:] = 1284494110.6 1284494111.1] INFO 2025-06-26 15:47:42,136 lopcToNetCDF.py constructTimestampList():1389 [1] timestampList[:2] = [np.float64(1284494011.5977335), np.float64(1284494012.0977335)], ..., timestampList[-2:] = [np.float64(1284494110.5977335), np.float64(1284494111.0977335)]] INFO 2025-06-26 15:47:42,136 lopcToNetCDF.py constructTimestampList():1394 [1] Subsampling correctedSampleCountList (len = 200) according to what got written to the netCDF file by the binning interval INFO 2025-06-26 15:47:42,136 lopcToNetCDF.py constructTimestampList():1399 [1] lFrameCountWrittenList[:2] = [20, 41], ... lFrameCountWrittenList[-2:] = [167, 188] INFO 2025-06-26 15:47:42,136 lopcToNetCDF.py constructTimestampList():1420 [1] len(subSampledCorrectedSampleCountList) = 9 INFO 2025-06-26 15:47:42,136 lopcToNetCDF.py constructTimestampList():1439 [1] len(timestampList) = 200 INFO 2025-06-26 15:47:42,136 lopcToNetCDF.py constructTimestampList():1440 [1] timestampList[:2] = [np.float64(1284494011.5977335), np.float64(1284494012.0977335)], ..., timestampList[-2:] = [np.float64(1284494110.5977335), np.float64(1284494111.0977335)]] INFO 2025-06-26 15:47:42,136 lopcToNetCDF.py constructTimestampList():1446 [1] Subsampling timestampList (len = 200) according to what got written to the netCDF file by the binning interval INFO 2025-06-26 15:47:42,136 lopcToNetCDF.py constructTimestampList():1457 [1] Taking indices [[np.int32(19), np.int32(40)] ... [np.int32(166), np.int32(187)]] from timestampList to create subSampledTimestampList INFO 2025-06-26 15:47:42,136 lopcToNetCDF.py constructTimestampList():1463 [1] len(subSampledTimestampList) = 9 INFO 2025-06-26 15:47:42,137 lopcToNetCDF.py constructTimestampList():1477 [1] Finding elements of cFrameEsecsList that != -9999 INFO 2025-06-26 15:47:42,138 lopcToNetCDF.py closeNetCDFFile():2096 [1] Writing time axis for len(tsList) = 9 INFO 2025-06-26 15:47:42,139 lopcToNetCDF.py closeNetCDFFile():2099 [1] tsList[:1] = [np.float64(1284494021.0977335)], ..., tsList[-2:] = [np.float64(1284494094.5977335), np.float64(1284494105.0977335)] INFO 2025-06-26 15:47:42,139 lopcToNetCDF.py closeNetCDFFile():2100 [1] Begin time = 2010-09-14 19:53:41 Z INFO 2025-06-26 15:47:42,139 lopcToNetCDF.py closeNetCDFFile():2103 [1] End time = 2010-09-14 19:55:05 Z INFO 2025-06-26 15:47:42,139 lopcToNetCDF.py closeNetCDFFile():2107 [1] Writing time axis for len(cFrameEsecsList) = 9 INFO 2025-06-26 15:47:42,139 lopcToNetCDF.py closeNetCDFFile():2111 [1] cFrameEsecsList[:1] = [1.28449402e+09], ..., cFrameEsecsList[-2:] = [1.28449409e+09 1.28449410e+09] INFO 2025-06-26 15:47:42,140 lopcToNetCDF.py closeNetCDFFile():2116 [1] Begin time = 2010-09-14 19:53:40 Z INFO 2025-06-26 15:47:42,140 lopcToNetCDF.py closeNetCDFFile():2120 [1] End time = 2010-09-14 19:55:04 Z INFO 2025-06-26 15:47:42,145 lopcToNetCDF.py main():2381 [1] Created file: /data/auv_data/dorado/missionnetcdfs/2010.257.00/lopc.nc INFO 2025-06-26 15:47:42,145 lopcToNetCDF.py main():2384 [1] Processing finished: Thu Jun 26 15:47:42 2025 Elapsed processing time from start of processing = 0 seconds INFO 2025-06-26 15:47:42,145 process.py calibrate():227 [1] Calibration steps for 2010.257.00 WARNING 2025-06-26 15:47:42,220 calibrate.py _navigation_process():1588 [1] No positive depths found in 2010.257.00/navigation.nc INFO 2025-06-26 15:47:42,223 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-06-26 15:47:42,225 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-06-26 15:47:42,798 calibrate.py _nudge_pos():1862 [1] 52: - - - 3 0.01 - - INFO 2025-06-26 15:47:42,798 calibrate.py _nudge_pos():1868 [1] Points in final series = 213 WARNING 2025-06-26 15:47:42,803 calibrate.py _depth_process():2193 [1] Expected sample_rate to be 10 Hz, instead it's 8.33 Hz INFO 2025-06-26 15:47:42,822 calibrate.py _geometric_depth_correction():3423 [1] hs2: d_beg_time_diff: 5 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 15:47:42,845 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 43 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 15:47:42,849 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 43 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 15:47:42,850 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2010.257.00/ctd1.nc INFO 2025-06-26 15:47:42,851 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd1_salinity values to NaN INFO 2025-06-26 15:47:42,851 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-06-26 15:47:42,851 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1 INFO 2025-06-26 15:47:42,868 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 26 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 15:47:42,873 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 26 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 15:47:42,874 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2010.257.00/ctd2.nc INFO 2025-06-26 15:47:42,875 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd2_salinity values to NaN INFO 2025-06-26 15:47:42,876 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-06-26 15:47:42,876 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2 ERROR 2025-06-26 15:47:42,881 calibrate.py process_logs():3542 [1] Error processing biolume: biolume has no orig_data - likely a missing or zero-sized .log file in missionlogs/2010.257.00 ERROR 2025-06-26 15:47:42,890 calibrate.py process_logs():3542 [1] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2010.257.00 INFO 2025-06-26 15:47:42,893 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2010.257.00/dorado_2010.257.00_cal.nc INFO 2025-06-26 15:47:42,933 calibrate.py write_netcdf():3512 [1] Data variables written: ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_salinity_onboard, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_salinity_onboard, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, hs2_bbp420, hs2_bbp700, hs2_depth, hs2_fl700, hs2_time, isus_nitrate, isus_quality, isus_temp, isus_time, lopc_LCcount, lopc_countListSum, lopc_flowSpeed, lopc_nonTransCount, lopc_time, lopc_transCount, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, tailcone_propRpm, tailcone_time, time INFO 2025-06-26 15:47:42,938 process.py align():251 [1] Alignment steps for 2010.257.00 INFO 2025-06-26 15:47:42,959 align.py process_cal():139 [1] Processing dorado_2010.257.00_cal.nc from /data/auv_data/dorado/missionnetcdfs/2010.257.00 INFO 2025-06-26 15:47:42,963 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 15:47:42,965 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.02 INFO 2025-06-26 15:47:42,973 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 15:47:42,975 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.02 INFO 2025-06-26 15:47:42,982 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 15:47:42,984 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.02 INFO 2025-06-26 15:47:42,988 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-06-26 15:47:42,988 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-06-26 15:47:42,991 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 15:47:42,993 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.02 INFO 2025-06-26 15:47:43,000 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2010.257.00_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:47:43,001 align.py process_cal():249 [1] hs2_bbp420: instrument_sample_rate_hz = 4.01 INFO 2025-06-26 15:47:43,010 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2010.257.00_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:47:43,012 align.py process_cal():249 [1] hs2_bbp700: instrument_sample_rate_hz = 4.01 INFO 2025-06-26 15:47:43,019 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2010.257.00_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:47:43,021 align.py process_cal():249 [1] hs2_fl700: instrument_sample_rate_hz = 4.01 INFO 2025-06-26 15:47:43,029 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.257.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:47:43,030 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:47:43,038 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.257.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:47:43,040 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:47:43,047 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.257.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:47:43,049 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:47:43,057 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.257.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:47:43,058 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:47:43,066 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.257.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:47:43,068 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:47:43,076 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.257.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:47:43,077 align.py process_cal():249 [1] ctd1_salinity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:47:43,085 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.257.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:47:43,087 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:47:43,096 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.257.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:47:43,098 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:47:43,106 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.257.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:47:43,108 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:47:43,116 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.257.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:47:43,118 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:47:43,126 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.257.00_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:47:43,128 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:47:43,136 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.257.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:47:43,138 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 15:47:43,147 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.257.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:47:43,148 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 15:47:43,157 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.257.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:47:43,159 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 15:47:43,168 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.257.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:47:43,169 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 15:47:43,178 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.257.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:47:43,180 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 15:47:43,189 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.257.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:47:43,190 align.py process_cal():249 [1] ctd2_salinity_onboard: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 15:47:43,200 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.257.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:47:43,202 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 15:47:43,211 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.257.00_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:47:43,213 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 3.99 INFO 2025-06-26 15:47:43,224 align.py process_cal():249 [1] isus_nitrate: instrument_sample_rate_hz = 0.71 INFO 2025-06-26 15:47:43,236 align.py process_cal():249 [1] isus_temp: instrument_sample_rate_hz = 0.71 INFO 2025-06-26 15:47:43,248 align.py process_cal():249 [1] isus_quality: instrument_sample_rate_hz = 0.71 INFO 2025-06-26 15:47:43,259 align.py process_cal():249 [1] lopc_countListSum: instrument_sample_rate_hz = 0.10 INFO 2025-06-26 15:47:43,271 align.py process_cal():249 [1] lopc_transCount: instrument_sample_rate_hz = 0.10 INFO 2025-06-26 15:47:43,283 align.py process_cal():249 [1] lopc_nonTransCount: instrument_sample_rate_hz = 0.10 INFO 2025-06-26 15:47:43,295 align.py process_cal():249 [1] lopc_LCcount: instrument_sample_rate_hz = 0.10 INFO 2025-06-26 15:47:43,307 align.py process_cal():249 [1] lopc_flowSpeed: instrument_sample_rate_hz = 0.10 INFO 2025-06-26 15:47:43,319 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 4.92 INFO 2025-06-26 15:47:43,330 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2010.257.00/dorado_2010.257.00_align.nc INFO 2025-06-26 15:47:43,372 align.py write_netcdf():342 [1] Data variables written: ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_salinity_onboard, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_salinity_onboard, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, hs2_bbp420, hs2_bbp700, hs2_depth, hs2_fl700, hs2_latitude, hs2_longitude, hs2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, lopc_LCcount, lopc_countListSum, lopc_depth, lopc_flowSpeed, lopc_latitude, lopc_longitude, lopc_nonTransCount, lopc_time, lopc_transCount, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-06-26 15:47:43,375 process.py resample():273 [1] Resampling steps for 2010.257.00 INFO 2025-06-26 15:47:43,375 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-06-26 15:47:43,396 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2010.257.00/dorado_2010.257.00_align.nc mission netCDF file INFO 2025-06-26 15:47:43,400 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2010.257.00/dorado_2010.257.00_align.nc mission netCDF file INFO 2025-06-26 15:47:43,401 resample.py get_mission_start_end():1145 [1] navigation: 2010-09-14T19:54:20.754365952 to 2010-09-14T19:55:11.770871040 (0 days 00:00:00.029997824 before mission_end) INFO 2025-06-26 15:47:43,402 resample.py get_mission_start_end():1145 [1] hs2 : 2010-09-14T19:53:37.237347072 to 2010-09-14T19:55:11.800868864 (0 days 00:00:00 before mission_end) INFO 2025-06-26 15:47:43,404 resample.py get_mission_start_end():1145 [1] ctd1 : 2010-09-14T19:54:14.604787456 to 2010-09-14T19:55:11.580884224 (0 days 00:00:00.219984640 before mission_end) INFO 2025-06-26 15:47:43,405 resample.py get_mission_start_end():1145 [1] ctd2 : 2010-09-14T19:53:58.535887872 to 2010-09-14T19:55:11.770871040 (0 days 00:00:00.029997824 before mission_end) INFO 2025-06-26 15:47:43,406 resample.py get_mission_start_end():1145 [1] isus : 2010-09-14T19:54:48.652454912 to 2010-09-14T19:55:11.150913536 (0 days 00:00:00.649955328 before mission_end) INFO 2025-06-26 15:47:43,407 resample.py get_mission_start_end():1145 [1] lopc : 2010-09-14T19:53:41.097733376 to 2010-09-14T19:55:05.097733376 (0 days 00:00:06.703135488 before mission_end) INFO 2025-06-26 15:47:43,408 resample.py get_mission_start_end():1145 [1] tailcone : 2010-09-14T19:53:32.487672576 to 2010-09-14T19:55:11.650879488 (0 days 00:00:00.149989376 before mission_end) INFO 2025-06-26 15:47:43,409 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2010.257.00/dorado_2010.257.00_align.nc mission netCDF file INFO 2025-06-26 15:47:43,409 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-06-26 15:47:43,436 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-06-26 15:47:43,443 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-06-26 15:47:43,451 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-06-26 15:47:43,458 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 15:47:43,467 resample.py resample_variable():1031 [1] Resampling hs2_bbp420 with frequency 1S following 3 point median filter INFO 2025-06-26 15:47:43,475 resample.py resample_variable():1031 [1] Resampling hs2_bbp700 with frequency 1S following 3 point median filter INFO 2025-06-26 15:47:43,483 resample.py resample_variable():1031 [1] Resampling hs2_fl700 with frequency 1S following 3 point median filter INFO 2025-06-26 15:47:43,490 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 15:47:43,497 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 15:47:43,503 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 15:47:43,510 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 15:47:43,517 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 15:47:43,523 resample.py resample_variable():1031 [1] Resampling ctd1_salinity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 15:47:43,530 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-06-26 15:47:43,536 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-06-26 15:47:43,543 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-06-26 15:47:43,549 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-06-26 15:47:43,557 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 15:47:43,564 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 15:47:43,572 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 15:47:43,579 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 15:47:43,587 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 15:47:43,594 resample.py resample_variable():1031 [1] Resampling ctd2_salinity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 15:47:43,602 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-06-26 15:47:43,610 resample.py resample_variable():1031 [1] Resampling isus_nitrate with frequency 1S following 3 point median filter INFO 2025-06-26 15:47:43,618 resample.py resample_variable():1031 [1] Resampling isus_temp with frequency 1S following 3 point median filter INFO 2025-06-26 15:47:43,625 resample.py resample_variable():1031 [1] Resampling isus_quality with frequency 1S following 3 point median filter INFO 2025-06-26 15:47:43,634 resample.py resample_variable():1031 [1] Resampling lopc_countListSum with frequency 1S following 3 point median filter INFO 2025-06-26 15:47:43,642 resample.py resample_variable():1031 [1] Resampling lopc_transCount with frequency 1S following 3 point median filter INFO 2025-06-26 15:47:43,650 resample.py resample_variable():1031 [1] Resampling lopc_nonTransCount with frequency 1S following 3 point median filter INFO 2025-06-26 15:47:43,658 resample.py resample_variable():1031 [1] Resampling lopc_LCcount with frequency 1S following 3 point median filter INFO 2025-06-26 15:47:43,666 resample.py resample_variable():1031 [1] Resampling lopc_flowSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 15:47:43,674 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-06-26 15:47:43,779 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2010.257.00/dorado_2010.257.00_1S.nc INFO 2025-06-26 15:47:44,276 create_products.py gulper_odv():401 [1] No gulper times found for 2010.257.00 INFO 2025-06-26 15:47:44,277 process.py archive():337 [1] Archiving steps for 2010.257.00 INFO 2025-06-26 15:47:44,277 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2010.257.00/dorado_2010.257.00, BASE_PATH = /data/auv_data INFO 2025-06-26 15:47:44,277 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2010.257.00/dorado_2010.257.00 files to /Volumes/AUVCTD/surveys/2010/netcdf INFO 2025-06-26 15:47:44,278 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2010/netcdf/dorado_2010.257.00_1S.nc INFO 2025-06-26 15:47:44,285 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.257.00/dorado_2010.257.00_1S.nc /Volumes/AUVCTD/surveys/2010/netcdf done. INFO 2025-06-26 15:47:44,285 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2010/netcdf/dorado_2010.257.00_cal.nc INFO 2025-06-26 15:47:44,292 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.257.00/dorado_2010.257.00_cal.nc /Volumes/AUVCTD/surveys/2010/netcdf done. INFO 2025-06-26 15:47:44,292 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2010/netcdf/dorado_2010.257.00_align.nc INFO 2025-06-26 15:47:44,299 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.257.00/dorado_2010.257.00_align.nc /Volumes/AUVCTD/surveys/2010/netcdf done. INFO 2025-06-26 15:47:44,305 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.257.00/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010257/2010.257.00 done. INFO 2025-06-26 15:47:44,309 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.257.00/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010257/2010.257.00 done. INFO 2025-06-26 15:47:44,313 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.257.00/gps.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010257/2010.257.00 done. INFO 2025-06-26 15:47:44,316 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.257.00/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010257/2010.257.00 done. INFO 2025-06-26 15:47:44,320 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.257.00/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010257/2010.257.00 done. INFO 2025-06-26 15:47:44,324 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.257.00/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010257/2010.257.00 done. INFO 2025-06-26 15:47:44,329 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.257.00/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010257/2010.257.00 done. INFO 2025-06-26 15:47:44,333 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.257.00/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010257/2010.257.00 done. INFO 2025-06-26 15:47:44,339 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.257.00/lopc.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010257/2010.257.00 done. INFO 2025-06-26 15:47:44,339 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-06-26 15:47:44,340 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.257.00/dorado_2010.257.00_processing.log /Volumes/AUVCTD/surveys/2010/netcdf