INFO 2025-06-26 15:46:27,478 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2005 --end_year 2014 --num_cores 1 -v --noinput --clobber INFO 2025-06-26 15:46:27,478 process.py process_mission():434 [1] dorado_info[mission]["comment"] = AUVCTD mission - Kanna missions in Monterey Bay rhodamine sensor replaces CDOM - around time of Board meeting - ctdToUse = ctd1 INFO 2025-06-26 15:46:27,478 process.py process_mission():449 [1] Processing AUVCTD mission 2010.181.02 by user docker_user on host eae60d30a712 INFO 2025-06-26 15:46:27,478 process.py download_process():165 [1] Download and processing steps for 2010.181.02 INFO 2025-06-26 15:46:27,478 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2010/2010181/2010.181.02 INFO 2025-06-26 15:46:27,478 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2010/2010181/2010.181.02 to /data/auv_data/dorado/missionlogs/2010.181.02 INFO 2025-06-26 15:46:30,623 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2010.181.02 INFO 2025-06-26 15:46:30,623 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.181.02/ctdDriver.log (6938219 bytes) INFO 2025-06-26 15:46:31,173 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.181.02/ctdDriver2.log (6938303 bytes) INFO 2025-06-26 15:46:31,765 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.181.02/gps.log (109148 bytes) INFO 2025-06-26 15:46:31,788 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.181.02/hydroscatlog.log (6075742 bytes) INFO 2025-06-26 15:46:32,483 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.181.02/navigation.log (21297946 bytes) INFO 2025-06-26 15:46:34,205 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.181.02/isuslog.log (450101 bytes) INFO 2025-06-26 15:46:34,256 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.181.02/parosci.log (7055078 bytes) INFO 2025-06-26 15:46:34,942 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.181.02/tailCone.log (4337659 bytes) INFO 2025-06-26 15:46:35,530 logs2netcdfs.py download_process_logs():807 [1] Time to process: 4.91 seconds INFO 2025-06-26 15:46:35,531 process.py download_process():198 [1] Processing file /data/auv_data/dorado/missionlogs/2010.181.02/lopc.bin (89795675 bytes) INFO 2025-06-26 15:46:35,531 lopcToNetCDF.py main():2297 [1] Processing begun: Thu Jun 26 15:46:35 2025 INFO 2025-06-26 15:46:35,531 lopcToNetCDF.py constructTimestampList():1296 [1] parosci_nc = /data/auv_data/dorado/missionnetcdfs/2010.181.02/parosci.nc INFO 2025-06-26 15:46:35,531 lopcToNetCDF.py constructTimestampList():1297 [1] Using NetCDF4 to get start and end epoch seconds for this mission from this URL: INFO 2025-06-26 15:46:35,531 lopcToNetCDF.py constructTimestampList():1300 [1] /data/auv_data/dorado/missionnetcdfs/2010.181.02/parosci.nc INFO 2025-06-26 15:46:35,535 lopcToNetCDF.py constructTimestampList():1317 [1] From associated parosci.nc file: sensor_on_time = 1277915804.3, sensor_off_time = 1277933898.0 INFO 2025-06-26 15:46:35,536 lopcToNetCDF.py constructTimestampList():1322 [1] Duration is 18093 seconds. Expecting to read 36186 L frames from the lopc.bin file. INFO 2025-06-26 15:46:35,536 lopcToNetCDF.py constructTimestampList():1330 [1] recCount not passed in, assuming we'll have 36186 records from the lopc.bin file. INFO 2025-06-26 15:46:35,756 lopcToNetCDF.py main():2321 [1] Examined sibling parosci.nc file to find startTime = 2010-06-30 16:36:44 Z and endTime = 2010-06-30 21:38:18 Z with 36186 records expected to be read from lopc.bin INFO 2025-06-26 15:46:35,756 lopcToNetCDF.py unpackLOPCbin():723 [1] >>> Unpacking LOPC data from /data/auv_data/dorado/missionlogs/2010.181.02/lopc.bin INFO 2025-06-26 15:46:35,756 lopcToNetCDF.py unpackLOPCbin():724 [1] >>> Will write to NetCDF file /data/auv_data/dorado/missionnetcdfs/2010.181.02/lopc.nc INFO 2025-06-26 15:46:35,757 lopcToNetCDF.py openNetCDFFile():1861 [1] Will output NetCDF file to /data/auv_data/dorado/missionnetcdfs/2010.181.02/lopc.nc INFO 2025-06-26 15:46:35,757 lopcToNetCDF.py openNetCDFFile():1887 [1] missionName = 2010.181.02 INFO 2025-06-26 15:46:35,758 lopcToNetCDF.py openNetCDFFile():1910 [1] Writing bin axis for len(self.dataStructure['binSizeList']) = 994 WARNING 2025-06-26 15:46:35,763 lopcToNetCDF.py readCframeData():665 [1] Unable to parse a float from the string cstr[:70] = A0425512 WARNING 2025-06-26 15:46:35,763 lopcToNetCDF.py readCframeData():665 [1] Unable to parse a float from the string cstr[:70] = INFO 2025-06-26 15:46:36,126 lopcToNetCDF.py unpackLOPCbin():951 [1] L Frames sample M Frames ShortLFrame LBeforeMEnd MBeforeLEnd UnknownFrame Garbled L INFO 2025-06-26 15:46:36,126 lopcToNetCDF.py unpackLOPCbin():969 [1] Count Count Count Error Error Error Error Error INFO 2025-06-26 15:46:36,126 lopcToNetCDF.py unpackLOPCbin():987 [1] -------- -------- -------- ----------- ----------- ----------- ----------- ------------ ERROR 2025-06-26 15:46:36,201 process.py download_process():223 [1] UnexpectedAreaOfCode: Encountered unexpected area of code - lopc.nc file is probably corrupt INFO 2025-06-26 15:46:36,202 process.py calibrate():227 [1] Calibration steps for 2010.181.02 INFO 2025-06-26 15:46:36,399 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-06-26 15:46:36,402 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-06-26 15:46:38,510 calibrate.py _nudge_pos():1806 [1] 251: 0.070 0.0045155 -0.0042715 7870 26.23 25.512 -30.176 2010-06-30T17:07:04.610761472 INFO 2025-06-26 15:46:38,541 calibrate.py _nudge_pos():1806 [1] 254: 0.070 0.0000081 -0.0000125 65 0.21 5.640 -10.872 2010-06-30T17:07:19.609733888 INFO 2025-06-26 15:46:39,241 calibrate.py _nudge_pos():1806 [1] 324: 0.070 0.0020937 -0.0055002 9060 30.20 10.276 -33.752 2010-06-30T17:38:40.610876672 INFO 2025-06-26 15:46:39,902 calibrate.py _nudge_pos():1806 [1] 391: 0.080 -0.0009749 -0.0008041 3029 10.10 -14.309 -14.758 2010-06-30T17:49:52.604841728 INFO 2025-06-26 15:46:42,446 calibrate.py _nudge_pos():1806 [1] 648: 0.080 0.0024508 -0.0027607 4690 15.63 23.235 -32.730 2010-06-30T18:09:46.603047424 INFO 2025-06-26 15:46:42,495 calibrate.py _nudge_pos():1806 [1] 653: 0.070 0.0000016 -0.0000298 95 0.31 0.774 -17.630 2010-06-30T18:10:09.611471104 INFO 2025-06-26 15:46:42,927 calibrate.py _nudge_pos():1806 [1] 697: 0.080 0.0013126 -0.0067220 9000 30.00 6.484 -41.524 2010-06-30T18:40:52.605217536 INFO 2025-06-26 15:46:43,887 calibrate.py _nudge_pos():1806 [1] 792: 0.080 -0.0008635 -0.0034743 5110 17.03 -7.514 -37.804 2010-06-30T18:59:28.608765952 INFO 2025-06-26 15:46:46,075 calibrate.py _nudge_pos():1806 [1] 1007: 0.090 0.0024383 -0.0070287 9154 30.51 11.841 -42.683 2010-06-30T19:33:34.608605440 INFO 2025-06-26 15:46:46,825 calibrate.py _nudge_pos():1806 [1] 1083: 0.090 -0.0024150 -0.0032262 6915 23.05 -15.527 -25.939 2010-06-30T19:57:52.608725504 INFO 2025-06-26 15:46:46,924 calibrate.py _nudge_pos():1806 [1] 1093: 0.090 -0.0000044 -0.0000187 75 0.25 -2.621 -14.043 2010-06-30T19:58:16.607081472 INFO 2025-06-26 15:46:47,560 calibrate.py _nudge_pos():1806 [1] 1156: 0.100 0.0004797 -0.0032614 5869 19.56 3.633 -30.891 2010-06-30T20:18:52.602409984 INFO 2025-06-26 15:46:47,770 calibrate.py _nudge_pos():1806 [1] 1173: 0.090 0.0000030 0.0000025 70 0.23 1.912 2.026 2010-06-30T20:19:22.610354432 INFO 2025-06-26 15:46:48,152 calibrate.py _nudge_pos():1806 [1] 1212: 0.090 0.0000045 0.0000030 80 0.26 2.561 2.133 2010-06-30T20:20:16.606655232 INFO 2025-06-26 15:46:48,635 calibrate.py _nudge_pos():1806 [1] 1262: 0.100 0.0000109 0.0000208 55 0.18 8.995 21.463 2010-06-30T20:21:16.602545152 INFO 2025-06-26 15:46:48,655 calibrate.py _nudge_pos():1806 [1] 1264: 0.090 -0.0000053 -0.0000028 55 0.18 -4.332 -2.860 2010-06-30T20:21:28.611722752 INFO 2025-06-26 15:46:48,779 calibrate.py _nudge_pos():1806 [1] 1277: 0.090 0.0000106 0.0000145 60 0.20 7.951 13.654 2010-06-30T20:21:52.610078464 INFO 2025-06-26 15:46:48,829 calibrate.py _nudge_pos():1806 [1] 1282: 0.100 0.0000106 0.0000100 70 0.23 6.837 8.048 2010-06-30T20:22:10.608845824 INFO 2025-06-26 15:46:49,068 calibrate.py _nudge_pos():1806 [1] 1307: 0.100 0.0026727 -0.0066038 9000 30.00 13.201 -40.794 2010-06-30T20:52:34.603893504 INFO 2025-06-26 15:46:49,669 calibrate.py _nudge_pos():1806 [1] 1370: 0.100 -0.0027017 -0.0032680 6619 22.06 -18.142 -27.446 2010-06-30T21:15:40.608945664 INFO 2025-06-26 15:46:49,757 calibrate.py _nudge_pos():1806 [1] 1379: 0.100 0.0000336 -0.0000272 80 0.26 18.922 -19.155 2010-06-30T21:16:04.607301376 INFO 2025-06-26 15:46:50,312 calibrate.py _nudge_pos():1806 [1] 1436: 0.100 0.0003437 -0.0033515 6050 20.16 2.526 -30.800 2010-06-30T21:37:10.610574592 INFO 2025-06-26 15:46:50,982 calibrate.py _nudge_pos():1862 [1] 1455: - - - 2 0.00 - - INFO 2025-06-26 15:46:50,982 calibrate.py _nudge_pos():1868 [1] Points in final series = 90234 INFO 2025-06-26 15:46:51,107 calibrate.py _depth_process():2162 [1] Removing depths outside of valid_depth_range=Range(min=-0.5, max=22) for self.args.mission=2010.181.02 INFO 2025-06-26 15:46:51,110 calibrate.py _depth_process():2175 [1] Setting 4 depths values to NaN WARNING 2025-06-26 15:46:51,113 calibrate.py _depth_process():2193 [1] Expected sample_rate to be 10 Hz, instead it's 8.33 Hz INFO 2025-06-26 15:46:51,795 calibrate.py _geometric_depth_correction():3423 [1] hs2: d_beg_time_diff: 6 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 15:46:52,490 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 27 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 15:46:53,034 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 27 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 15:46:53,037 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2010.181.02/ctd1.nc INFO 2025-06-26 15:46:53,038 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd1_salinity values to NaN INFO 2025-06-26 15:46:53,038 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-06-26 15:46:53,038 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1 INFO 2025-06-26 15:46:53,700 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 27 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 15:46:54,271 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 27 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 15:46:54,273 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2010.181.02/ctd2.nc INFO 2025-06-26 15:46:54,274 calibrate.py _range_qc_combined_nc():898 [1] Setting 0 ctd2_salinity values to NaN INFO 2025-06-26 15:46:54,275 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-06-26 15:46:54,275 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2 ERROR 2025-06-26 15:46:54,292 calibrate.py process_logs():3542 [1] Error processing biolume: biolume has no orig_data - likely a missing or zero-sized .log file in missionlogs/2010.181.02 ERROR 2025-06-26 15:46:54,292 calibrate.py process_logs():3542 [1] Error processing lopc: lopc has no time coordinate - likely an incomplete lopc.nc file in missionlogs/2010.181.02 ERROR 2025-06-26 15:46:54,292 calibrate.py process_logs():3542 [1] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2010.181.02 INFO 2025-06-26 15:46:54,366 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2010.181.02/dorado_2010.181.02_cal.nc INFO 2025-06-26 15:46:54,459 calibrate.py write_netcdf():3512 [1] Data variables written: ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_salinity_onboard, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_salinity_onboard, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, hs2_bbp420, hs2_bbp700, hs2_depth, hs2_fl700, hs2_time, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, tailcone_propRpm, tailcone_time, time INFO 2025-06-26 15:46:54,464 process.py align():251 [1] Alignment steps for 2010.181.02 INFO 2025-06-26 15:46:54,491 align.py process_cal():139 [1] Processing dorado_2010.181.02_cal.nc from /data/auv_data/dorado/missionnetcdfs/2010.181.02 INFO 2025-06-26 15:46:54,519 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 15:46:54,522 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 15:46:54,587 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 15:46:54,592 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 15:46:54,654 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 15:46:54,659 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 15:46:54,695 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-06-26 15:46:54,695 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-06-26 15:46:54,718 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 15:46:54,723 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 15:46:54,784 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2010.181.02_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:46:54,788 align.py process_cal():249 [1] hs2_bbp420: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:46:54,852 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2010.181.02_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:46:54,856 align.py process_cal():249 [1] hs2_bbp700: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:46:54,910 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2010.181.02_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:46:54,914 align.py process_cal():249 [1] hs2_fl700: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:46:54,968 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.181.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:46:54,972 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:46:55,031 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.181.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:46:55,035 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:46:55,099 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.181.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:46:55,104 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:46:55,159 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.181.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:46:55,164 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:46:55,218 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.181.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:46:55,223 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:46:55,279 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.181.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:46:55,283 align.py process_cal():249 [1] ctd1_salinity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:46:55,338 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.181.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:46:55,342 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:46:55,398 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.181.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:46:55,402 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:46:55,457 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.181.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:46:55,462 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:46:55,518 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.181.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:46:55,523 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:46:55,579 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.181.02_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:46:55,583 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:46:55,640 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.181.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:46:55,645 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:46:55,700 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.181.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:46:55,705 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:46:55,760 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.181.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:46:55,765 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:46:55,818 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.181.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:46:55,823 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:46:55,880 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.181.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:46:55,884 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:46:55,938 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.181.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:46:55,942 align.py process_cal():249 [1] ctd2_salinity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:46:55,998 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.181.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:46:56,002 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:46:56,058 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.181.02_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:46:56,062 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:46:56,128 align.py process_cal():249 [1] isus_nitrate: instrument_sample_rate_hz = 0.78 INFO 2025-06-26 15:46:56,174 align.py process_cal():249 [1] isus_temp: instrument_sample_rate_hz = 0.78 INFO 2025-06-26 15:46:56,220 align.py process_cal():249 [1] isus_quality: instrument_sample_rate_hz = 0.78 INFO 2025-06-26 15:46:56,268 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 4.99 INFO 2025-06-26 15:46:56,313 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2010.181.02/dorado_2010.181.02_align.nc INFO 2025-06-26 15:46:56,385 align.py write_netcdf():342 [1] Data variables written: ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_salinity_onboard, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_salinity_onboard, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, hs2_bbp420, hs2_bbp700, hs2_depth, hs2_fl700, hs2_latitude, hs2_longitude, hs2_time, isus_depth, isus_latitude, isus_longitude, isus_nitrate, isus_quality, isus_temp, isus_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-06-26 15:46:56,388 process.py resample():273 [1] Resampling steps for 2010.181.02 INFO 2025-06-26 15:46:56,389 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-06-26 15:46:56,414 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2010.181.02/dorado_2010.181.02_align.nc mission netCDF file INFO 2025-06-26 15:46:56,419 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2010.181.02/dorado_2010.181.02_align.nc mission netCDF file INFO 2025-06-26 15:46:56,420 resample.py get_mission_start_end():1145 [1] navigation: 2010-06-30T16:37:30.192317440 to 2010-06-30T21:38:18.005957632 (0 days 00:00:00.079994368 before mission_end) INFO 2025-06-26 15:46:56,422 resample.py get_mission_start_end():1145 [1] hs2 : 2010-06-30T16:36:50.465039104 to 2010-06-30T21:38:18.085952000 (0 days 00:00:00 before mission_end) INFO 2025-06-26 15:46:56,424 resample.py get_mission_start_end():1145 [1] ctd1 : 2010-06-30T16:37:11.803577088 to 2010-06-30T21:38:17.905964288 (0 days 00:00:00.179987712 before mission_end) INFO 2025-06-26 15:46:56,426 resample.py get_mission_start_end():1145 [1] ctd2 : 2010-06-30T16:37:11.803577088 to 2010-06-30T21:38:17.885965824 (0 days 00:00:00.199986176 before mission_end) INFO 2025-06-26 15:46:56,427 resample.py get_mission_start_end():1145 [1] isus : 2010-06-30T16:37:59.760291840 to 2010-06-30T21:38:16.876035072 (0 days 00:00:01.209916928 before mission_end) INFO 2025-06-26 15:46:56,429 resample.py get_mission_start_end():1145 [1] tailcone : 2010-06-30T16:36:43.945485568 to 2010-06-30T21:38:17.945961728 (0 days 00:00:00.139990272 before mission_end) INFO 2025-06-26 15:46:56,430 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2010.181.02/dorado_2010.181.02_align.nc mission netCDF file INFO 2025-06-26 15:46:56,430 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-06-26 15:46:56,634 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-06-26 15:46:56,670 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-06-26 15:46:56,704 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-06-26 15:46:56,739 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 15:46:56,769 resample.py resample_variable():1031 [1] Resampling hs2_bbp420 with frequency 1S following 3 point median filter INFO 2025-06-26 15:46:56,798 resample.py resample_variable():1031 [1] Resampling hs2_bbp700 with frequency 1S following 3 point median filter INFO 2025-06-26 15:46:56,827 resample.py resample_variable():1031 [1] Resampling hs2_fl700 with frequency 1S following 3 point median filter INFO 2025-06-26 15:46:56,856 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 15:46:56,884 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 15:46:56,910 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 15:46:56,937 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 15:46:56,963 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 15:46:56,990 resample.py resample_variable():1031 [1] Resampling ctd1_salinity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 15:46:57,017 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-06-26 15:46:57,045 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-06-26 15:46:57,072 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-06-26 15:46:57,099 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-06-26 15:46:57,130 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 15:46:57,159 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 15:46:57,187 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 15:46:57,216 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 15:46:57,245 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 15:46:57,272 resample.py resample_variable():1031 [1] Resampling ctd2_salinity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 15:46:57,300 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-06-26 15:46:57,315 resample.py resample_variable():1031 [1] Resampling isus_nitrate with frequency 1S following 3 point median filter INFO 2025-06-26 15:46:57,329 resample.py resample_variable():1031 [1] Resampling isus_temp with frequency 1S following 3 point median filter INFO 2025-06-26 15:46:57,343 resample.py resample_variable():1031 [1] Resampling isus_quality with frequency 1S following 3 point median filter INFO 2025-06-26 15:46:57,383 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-06-26 15:46:57,585 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2010.181.02/dorado_2010.181.02_1S.nc INFO 2025-06-26 15:46:59,649 create_products.py _get_best_ctd():380 [1] ctdToUse = ctd1 INFO 2025-06-26 15:47:09,677 create_products.py gulper_odv():522 [1] Wrote 9 Gulper data lines to /data/auv_data/dorado/missionodvs/2010.181.02/dorado_2010.181.02_1S_Gulper.txt INFO 2025-06-26 15:47:09,678 process.py archive():337 [1] Archiving steps for 2010.181.02 INFO 2025-06-26 15:47:09,678 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2010.181.02/dorado_2010.181.02, BASE_PATH = /data/auv_data INFO 2025-06-26 15:47:09,678 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2010.181.02/dorado_2010.181.02 files to /Volumes/AUVCTD/surveys/2010/netcdf INFO 2025-06-26 15:47:09,679 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2010/netcdf/dorado_2010.181.02_1S.nc INFO 2025-06-26 15:47:09,696 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.181.02/dorado_2010.181.02_1S.nc /Volumes/AUVCTD/surveys/2010/netcdf done. INFO 2025-06-26 15:47:09,697 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2010/netcdf/dorado_2010.181.02_cal.nc INFO 2025-06-26 15:47:09,773 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.181.02/dorado_2010.181.02_cal.nc /Volumes/AUVCTD/surveys/2010/netcdf done. INFO 2025-06-26 15:47:09,775 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2010/netcdf/dorado_2010.181.02_align.nc INFO 2025-06-26 15:47:09,849 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.181.02/dorado_2010.181.02_align.nc /Volumes/AUVCTD/surveys/2010/netcdf done. INFO 2025-06-26 15:47:09,873 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.181.02/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010181/2010.181.02 done. INFO 2025-06-26 15:47:09,894 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.181.02/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010181/2010.181.02 done. INFO 2025-06-26 15:47:09,900 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.181.02/gps.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010181/2010.181.02 done. INFO 2025-06-26 15:47:09,919 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.181.02/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010181/2010.181.02 done. INFO 2025-06-26 15:47:09,977 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.181.02/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010181/2010.181.02 done. INFO 2025-06-26 15:47:09,983 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.181.02/isuslog.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010181/2010.181.02 done. INFO 2025-06-26 15:47:10,004 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.181.02/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010181/2010.181.02 done. INFO 2025-06-26 15:47:10,024 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.181.02/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010181/2010.181.02 done. INFO 2025-06-26 15:47:10,028 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.181.02/lopc.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010181/2010.181.02 done. INFO 2025-06-26 15:47:10,029 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-06-26 15:47:10,030 archive.py copy_to_AUVTCD():133 [1] Removing /Volumes/AUVCTD/surveys/2010/odv/dorado_2010.181.02_1S_Gulper.txt INFO 2025-06-26 15:47:10,035 archive.py copy_to_AUVTCD():136 [1] copyfile /data/auv_data/dorado/missionodvs/2010.181.02/dorado_2010.181.02_1S_Gulper.txt /Volumes/AUVCTD/surveys/2010/odv done. INFO 2025-06-26 15:47:10,035 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.181.02/dorado_2010.181.02_processing.log /Volumes/AUVCTD/surveys/2010/netcdf