INFO 2025-06-26 15:41:32,898 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2005 --end_year 2014 --num_cores 1 -v --noinput --clobber INFO 2025-06-26 15:41:32,898 process.py process_mission():434 [1] dorado_info[mission]["comment"] = AUVCTD mission - Gulf of Mexico mission - perhaps a better volume survey than on the previous day - ctdToUse = ctd1 INFO 2025-06-26 15:41:32,898 process.py process_mission():449 [1] Processing AUVCTD mission 2010.154.01 by user docker_user on host eae60d30a712 INFO 2025-06-26 15:41:32,898 process.py download_process():165 [1] Download and processing steps for 2010.154.01 INFO 2025-06-26 15:41:32,898 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2010/2010154/2010.154.01 INFO 2025-06-26 15:41:32,898 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2010/2010154/2010.154.01 to /data/auv_data/dorado/missionlogs/2010.154.01 INFO 2025-06-26 15:41:37,303 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2010.154.01 INFO 2025-06-26 15:41:37,303 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.154.01/ctdDriver.log (16476582 bytes) INFO 2025-06-26 15:41:38,483 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.154.01/ctdDriver2.log (16461215 bytes) INFO 2025-06-26 15:41:39,673 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.154.01/gps.log (114332 bytes) INFO 2025-06-26 15:41:39,693 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.154.01/hydroscatlog.log (14414926 bytes) INFO 2025-06-26 15:41:41,166 logs2netcdfs.py _process_log_file():687 [1] Non-monotonic increasing time indices in /data/auv_data/dorado/missionlogs/2010.154.01/hydroscatlog.log: [1] INFO 2025-06-26 15:41:41,214 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.154.01/navigation.log (50614102 bytes) INFO 2025-06-26 15:41:44,934 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.154.01/parosci.log (16883174 bytes) INFO 2025-06-26 15:41:46,388 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.154.01/tailCone.log (10301803 bytes) INFO 2025-06-26 15:41:47,661 logs2netcdfs.py download_process_logs():807 [1] Time to process: 10.36 seconds WARNING 2025-06-26 15:41:47,661 process.py download_process():196 [1] No lopc.bin file for 2010.154.01 INFO 2025-06-26 15:41:47,661 process.py calibrate():227 [1] Calibration steps for 2010.154.01 INFO 2025-06-26 15:41:47,939 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-06-26 15:41:47,941 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-06-26 15:41:48,636 calibrate.py _nudge_pos():1806 [1] 97: 0.200 -0.0008287 -0.0031059 6460 21.53 -6.257 -26.731 2010-06-03T12:18:34.125514752 INFO 2025-06-26 15:41:49,518 calibrate.py _nudge_pos():1806 [1] 187: 0.200 -0.0013308 -0.0034125 6394 21.31 -10.153 -29.673 2010-06-03T12:41:22.121800704 INFO 2025-06-26 15:41:50,880 calibrate.py _nudge_pos():1806 [1] 325: 0.010 -0.0014250 -0.0022107 4925 16.41 -14.114 -24.958 2010-06-03T13:00:04.324924416 INFO 2025-06-26 15:41:51,200 calibrate.py _nudge_pos():1806 [1] 358: 0.010 0.0000464 0.0000620 40 0.13 58.077 88.390 2010-06-03T13:00:44.322184448 INFO 2025-06-26 15:41:51,338 calibrate.py _nudge_pos():1806 [1] 372: 0.010 0.0006296 -0.0004626 1505 5.01 20.417 -17.099 2010-06-03T13:05:58.320674048 INFO 2025-06-26 15:41:52,458 calibrate.py _nudge_pos():1806 [1] 487: 0.020 0.0015953 -0.0018370 23490 78.30 3.313 -4.347 2010-06-03T14:26:10.321029376 INFO 2025-06-26 15:41:53,538 calibrate.py _nudge_pos():1806 [1] 596: 0.030 0.0000471 -0.0037879 25890 86.30 0.089 -8.133 2010-06-03T15:54:16.318913792 INFO 2025-06-26 15:41:54,416 calibrate.py _nudge_pos():1806 [1] 684: 0.020 0.0009180 -0.0027093 25690 85.63 1.743 -5.863 2010-06-03T17:21:22.320908032 INFO 2025-06-26 15:41:55,290 calibrate.py _nudge_pos():1806 [1] 770: 0.030 0.0000380 -0.0000063 20 0.06 97.486 -18.293 2010-06-03T17:22:53.324673792 INFO 2025-06-26 15:41:55,389 calibrate.py _nudge_pos():1806 [1] 780: 0.020 0.0010772 -0.0043726 25480 84.93 2.062 -9.540 2010-06-03T18:47:58.324957440 INFO 2025-06-26 15:41:55,522 calibrate.py _nudge_pos():1806 [1] 793: 0.030 0.0000187 0.0000140 15 0.05 65.039 55.594 2010-06-03T18:48:13.323930112 INFO 2025-06-26 15:41:56,429 calibrate.py _nudge_pos():1806 [1] 883: 0.020 0.0006438 -0.0031299 25640 85.46 1.225 -6.786 2010-06-03T20:15:10.326540800 INFO 2025-06-26 15:41:57,464 calibrate.py _nudge_pos():1806 [1] 983: 0.040 0.0010156 -0.0044703 25275 84.25 1.960 -9.832 2010-06-03T21:41:04.323467776 INFO 2025-06-26 15:41:57,929 calibrate.py _nudge_pos():1806 [1] 1027: 0.030 0.0000022 0.0000232 20 0.06 5.563 67.785 2010-06-03T21:41:51.320248320 INFO 2025-06-26 15:42:00,443 calibrate.py _nudge_pos():1806 [1] 1272: 0.040 0.0008635 -0.0034415 25719 85.73 1.638 -7.438 2010-06-03T23:11:40.321076480 INFO 2025-06-26 15:42:00,547 calibrate.py _nudge_pos():1806 [1] 1282: 0.040 0.0000589 -0.0000369 25 0.08 119.734 -85.428 2010-06-03T23:11:54.320117504 INFO 2025-06-26 15:42:03,186 calibrate.py _nudge_pos():1806 [1] 1537: 0.040 0.0000106 -0.0000000 30 0.10 17.864 -0.018 2010-06-03T23:16:14.322306048 INFO 2025-06-26 15:42:03,478 calibrate.py _nudge_pos():1806 [1] 1565: 0.040 0.0000607 -0.0003654 10190 33.96 0.291 -1.993 2010-06-03T23:50:40.320775424 INFO 2025-06-26 15:42:03,589 calibrate.py _nudge_pos():1862 [1] 1543: - - - 2 0.00 - - INFO 2025-06-26 15:42:03,589 calibrate.py _nudge_pos():1868 [1] Points in final series = 214321 WARNING 2025-06-26 15:42:03,865 calibrate.py _depth_process():2193 [1] Expected sample_rate to be 10 Hz, instead it's 8.33 Hz INFO 2025-06-26 15:42:25,335 calibrate.py _hs2_process():2400 [1] Number of bad hs2 points: 122 of 171593 INFO 2025-06-26 15:42:26,665 calibrate.py _geometric_depth_correction():3423 [1] hs2: d_beg_time_diff: 4 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 15:42:28,314 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 18 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 15:42:29,652 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 18 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 15:42:29,655 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2010.154.01/ctd1.nc INFO 2025-06-26 15:42:29,657 calibrate.py _range_qc_combined_nc():898 [1] Setting 46 ctd1_salinity values to NaN INFO 2025-06-26 15:42:29,658 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-06-26 15:42:29,658 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1 INFO 2025-06-26 15:42:31,259 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 59 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 15:42:32,578 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 59 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 15:42:32,581 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2010.154.01/ctd2.nc INFO 2025-06-26 15:42:32,583 calibrate.py _range_qc_combined_nc():898 [1] Setting 32 ctd2_salinity values to NaN INFO 2025-06-26 15:42:32,583 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-06-26 15:42:32,583 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2 ERROR 2025-06-26 15:42:32,584 calibrate.py process_logs():3542 [1] Error processing isus: isus has no orig_data - likely a missing or zero-sized .log file in missionlogs/2010.154.01 ERROR 2025-06-26 15:42:32,584 calibrate.py process_logs():3542 [1] Error processing biolume: biolume has no orig_data - likely a missing or zero-sized .log file in missionlogs/2010.154.01 ERROR 2025-06-26 15:42:32,584 calibrate.py process_logs():3542 [1] Error processing lopc: lopc has no orig_data - likely a missing or zero-sized .log file in missionlogs/2010.154.01 ERROR 2025-06-26 15:42:32,584 calibrate.py process_logs():3542 [1] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2010.154.01 INFO 2025-06-26 15:42:32,813 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2010.154.01/dorado_2010.154.01_cal.nc INFO 2025-06-26 15:42:32,953 calibrate.py write_netcdf():3512 [1] Data variables written: ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_salinity_onboard, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_salinity_onboard, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, tailcone_propRpm, tailcone_time, time INFO 2025-06-26 15:42:32,957 process.py align():251 [1] Alignment steps for 2010.154.01 INFO 2025-06-26 15:42:32,990 align.py process_cal():139 [1] Processing dorado_2010.154.01_cal.nc from /data/auv_data/dorado/missionnetcdfs/2010.154.01 INFO 2025-06-26 15:42:33,048 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 15:42:33,055 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 15:42:33,199 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 15:42:33,208 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 15:42:33,341 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 15:42:33,349 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 15:42:33,432 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-06-26 15:42:33,432 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-06-26 15:42:33,486 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 15:42:33,494 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 15:42:33,627 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2010.154.01_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:42:33,635 align.py process_cal():249 [1] hs2_bbp470: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:42:33,751 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2010.154.01_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:42:33,758 align.py process_cal():249 [1] hs2_bbp676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:42:33,881 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2010.154.01_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:42:33,888 align.py process_cal():249 [1] hs2_fl676: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:42:34,006 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.154.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:42:34,013 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:42:34,131 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.154.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:42:34,139 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:42:34,255 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.154.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:42:34,262 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:42:34,380 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.154.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:42:34,387 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:42:34,501 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.154.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:42:34,509 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:42:34,625 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.154.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:42:34,632 align.py process_cal():249 [1] ctd1_salinity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:42:34,746 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.154.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:42:34,753 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:42:34,871 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.154.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:42:34,879 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:42:34,995 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.154.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:42:35,002 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:42:35,123 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.154.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:42:35,131 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:42:35,247 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.154.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:42:35,253 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:42:35,371 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.154.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:42:35,378 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:42:35,495 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.154.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:42:35,502 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:42:35,623 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.154.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:42:35,630 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:42:35,745 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.154.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:42:35,753 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:42:35,869 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.154.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:42:35,876 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:42:35,993 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.154.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:42:36,000 align.py process_cal():249 [1] ctd2_salinity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:42:36,118 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.154.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:42:36,125 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:42:36,240 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.154.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:42:36,247 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:42:36,390 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 15:42:36,480 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2010.154.01/dorado_2010.154.01_align.nc INFO 2025-06-26 15:42:36,585 align.py write_netcdf():342 [1] Data variables written: ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_salinity_onboard, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_salinity_onboard, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, hs2_bbp470, hs2_bbp676, hs2_depth, hs2_fl676, hs2_latitude, hs2_longitude, hs2_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-06-26 15:42:36,587 process.py resample():273 [1] Resampling steps for 2010.154.01 INFO 2025-06-26 15:42:36,588 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-06-26 15:42:36,612 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2010.154.01/dorado_2010.154.01_align.nc mission netCDF file INFO 2025-06-26 15:42:36,618 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2010.154.01/dorado_2010.154.01_align.nc mission netCDF file INFO 2025-06-26 15:42:36,620 resample.py get_mission_start_end():1145 [1] navigation: 2010-06-03T11:55:59.208333056 to 2010-06-03T23:50:50.720063232 (0 days 00:00:00.139990272 before mission_end) INFO 2025-06-26 15:42:36,622 resample.py get_mission_start_end():1145 [1] hs2 : 2010-06-03T11:55:31.450234368 to 2010-06-03T23:50:50.700064512 (0 days 00:00:00.159988992 before mission_end) INFO 2025-06-26 15:42:36,624 resample.py get_mission_start_end():1145 [1] ctd1 : 2010-06-03T11:55:45.599265024 to 2010-06-03T23:50:50.660067328 (0 days 00:00:00.199986176 before mission_end) INFO 2025-06-26 15:42:36,626 resample.py get_mission_start_end():1145 [1] ctd2 : 2010-06-03T11:56:26.106490368 to 2010-06-03T23:50:50.860053504 (0 days 00:00:00 before mission_end) INFO 2025-06-26 15:42:36,628 resample.py get_mission_start_end():1145 [1] tailcone : 2010-06-03T11:55:27.710490624 to 2010-06-03T23:50:50.710063616 (0 days 00:00:00.149989888 before mission_end) INFO 2025-06-26 15:42:36,629 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2010.154.01/dorado_2010.154.01_align.nc mission netCDF file INFO 2025-06-26 15:42:36,630 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-06-26 15:42:37,061 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-06-26 15:42:37,133 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-06-26 15:42:37,203 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-06-26 15:42:37,273 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 15:42:37,334 resample.py resample_variable():1031 [1] Resampling hs2_bbp470 with frequency 1S following 3 point median filter INFO 2025-06-26 15:42:37,395 resample.py resample_variable():1031 [1] Resampling hs2_bbp676 with frequency 1S following 3 point median filter INFO 2025-06-26 15:42:37,455 resample.py resample_variable():1031 [1] Resampling hs2_fl676 with frequency 1S following 3 point median filter INFO 2025-06-26 15:42:37,514 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 15:42:37,569 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 15:42:37,628 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 15:42:37,683 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 15:42:37,738 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 15:42:37,793 resample.py resample_variable():1031 [1] Resampling ctd1_salinity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 15:42:37,847 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-06-26 15:42:37,902 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-06-26 15:42:37,957 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-06-26 15:42:38,014 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-06-26 15:42:38,073 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 15:42:38,134 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 15:42:38,198 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 15:42:38,256 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 15:42:38,316 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 15:42:38,375 resample.py resample_variable():1031 [1] Resampling ctd2_salinity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 15:42:38,433 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-06-26 15:42:38,503 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-06-26 15:42:38,840 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2010.154.01/dorado_2010.154.01_1S.nc INFO 2025-06-26 15:42:41,064 create_products.py _get_best_ctd():380 [1] ctdToUse = ctd1 INFO 2025-06-26 15:42:50,664 create_products.py gulper_odv():522 [1] Wrote 10 Gulper data lines to /data/auv_data/dorado/missionodvs/2010.154.01/dorado_2010.154.01_1S_Gulper.txt INFO 2025-06-26 15:42:50,664 process.py archive():337 [1] Archiving steps for 2010.154.01 INFO 2025-06-26 15:42:50,664 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2010.154.01/dorado_2010.154.01, BASE_PATH = /data/auv_data INFO 2025-06-26 15:42:50,665 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2010.154.01/dorado_2010.154.01 files to /Volumes/AUVCTD/surveys/2010/netcdf INFO 2025-06-26 15:42:50,666 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2010/netcdf/dorado_2010.154.01_1S.nc INFO 2025-06-26 15:42:50,694 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.154.01/dorado_2010.154.01_1S.nc /Volumes/AUVCTD/surveys/2010/netcdf done. INFO 2025-06-26 15:42:50,695 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2010/netcdf/dorado_2010.154.01_cal.nc INFO 2025-06-26 15:42:50,857 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.154.01/dorado_2010.154.01_cal.nc /Volumes/AUVCTD/surveys/2010/netcdf done. INFO 2025-06-26 15:42:50,858 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2010/netcdf/dorado_2010.154.01_align.nc INFO 2025-06-26 15:42:51,015 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.154.01/dorado_2010.154.01_align.nc /Volumes/AUVCTD/surveys/2010/netcdf done. INFO 2025-06-26 15:42:51,063 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.154.01/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010154/2010.154.01 done. INFO 2025-06-26 15:42:51,106 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.154.01/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010154/2010.154.01 done. INFO 2025-06-26 15:42:51,111 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.154.01/gps.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010154/2010.154.01 done. INFO 2025-06-26 15:42:51,149 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.154.01/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010154/2010.154.01 done. INFO 2025-06-26 15:42:51,276 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.154.01/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010154/2010.154.01 done. INFO 2025-06-26 15:42:51,320 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.154.01/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010154/2010.154.01 done. INFO 2025-06-26 15:42:51,356 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.154.01/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010154/2010.154.01 done. INFO 2025-06-26 15:42:51,356 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-06-26 15:42:51,358 archive.py copy_to_AUVTCD():133 [1] Removing /Volumes/AUVCTD/surveys/2010/odv/dorado_2010.154.01_1S_Gulper.txt INFO 2025-06-26 15:42:51,363 archive.py copy_to_AUVTCD():136 [1] copyfile /data/auv_data/dorado/missionodvs/2010.154.01/dorado_2010.154.01_1S_Gulper.txt /Volumes/AUVCTD/surveys/2010/odv done. INFO 2025-06-26 15:42:51,363 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.154.01/dorado_2010.154.01_processing.log /Volumes/AUVCTD/surveys/2010/netcdf