INFO 2025-06-26 15:36:30,590 process.py process_mission():429 [1] commandline = src/data/process_dorado.py --start_year 2005 --end_year 2014 --num_cores 1 -v --noinput --clobber INFO 2025-06-26 15:36:30,590 process.py process_mission():434 [1] dorado_info[mission]["comment"] = AUVCTD mission - Gulf of Mexico mission - down to 1200 m a few yo-yos at depth strong backscatter signal - ctdToUse = ctd1 INFO 2025-06-26 15:36:30,590 process.py process_mission():449 [1] Processing AUVCTD mission 2010.153.01 by user docker_user on host eae60d30a712 INFO 2025-06-26 15:36:30,590 process.py download_process():165 [1] Download and processing steps for 2010.153.01 INFO 2025-06-26 15:36:30,590 logs2netcdfs.py download_process_logs():739 [1] src_dir = /Volumes/AUVCTD/missionlogs/2010/2010153/2010.153.01 INFO 2025-06-26 15:36:30,590 logs2netcdfs.py download_process_logs():768 [1] Rsyncing /Volumes/AUVCTD/missionlogs/2010/2010153/2010.153.01 to /data/auv_data/dorado/missionlogs/2010.153.01 INFO 2025-06-26 15:36:34,978 logs2netcdfs.py download_process_logs():779 [1] Processing mission: dorado 2010.153.01 INFO 2025-06-26 15:36:34,979 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.153.01/ctdDriver.log (15625542 bytes) INFO 2025-06-26 15:36:36,145 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.153.01/ctdDriver2.log (15622175 bytes) INFO 2025-06-26 15:36:37,280 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.153.01/gps.log (1892156 bytes) INFO 2025-06-26 15:36:37,495 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.153.01/hydroscatlog.log (13678582 bytes) INFO 2025-06-26 15:36:38,926 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.153.01/navigation.log (48026126 bytes) INFO 2025-06-26 15:36:42,349 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.153.01/parosci.log (15980822 bytes) INFO 2025-06-26 15:36:43,701 logs2netcdfs.py download_process_logs():788 [1] Processing file /data/auv_data/dorado/missionlogs/2010.153.01/tailCone.log (9775723 bytes) INFO 2025-06-26 15:36:44,915 logs2netcdfs.py download_process_logs():807 [1] Time to process: 9.94 seconds WARNING 2025-06-26 15:36:44,915 process.py download_process():196 [1] No lopc.bin file for 2010.153.01 INFO 2025-06-26 15:36:44,915 process.py calibrate():227 [1] Calibration steps for 2010.153.01 INFO 2025-06-26 15:36:45,254 calibrate.py _nudge_pos():1680 [1] seg# end_sec_diff end_lon_diff end_lat_diff len(segi) seg_min u_drift (cm/s) v_drift (cm/s) start datetime of segment INFO 2025-06-26 15:36:45,256 calibrate.py _nudge_pos():1711 [1] - - - 0 0.00 - - - INFO 2025-06-26 15:36:45,867 calibrate.py _nudge_pos():1806 [1] 91: 0.150 -0.0000880 -0.0003087 1305 4.35 -3.292 -13.160 2010-06-02T15:56:34.234875136 INFO 2025-06-26 15:36:48,939 calibrate.py _nudge_pos():1806 [1] 408: 0.170 0.0022380 -0.0019593 24490 81.63 4.458 -4.448 2010-06-02T17:23:28.227692288 INFO 2025-06-26 15:36:51,626 calibrate.py _nudge_pos():1806 [1] 680: 0.170 0.0012874 -0.0047750 25125 83.75 2.500 -10.565 2010-06-02T18:51:44.234891008 INFO 2025-06-26 15:36:54,479 calibrate.py _nudge_pos():1806 [1] 973: 0.170 0.0000406 -0.0000003 15 0.05 141.491 -1.175 2010-06-02T18:56:39.234682112 INFO 2025-06-26 15:36:54,822 calibrate.py _nudge_pos():1806 [1] 1008: 0.180 0.0032287 0.0015317 16395 54.65 9.606 5.194 2010-06-02T19:51:52.227726336 INFO 2025-06-26 15:36:54,931 calibrate.py _nudge_pos():1806 [1] 1019: 0.180 -0.0000128 -0.0000245 15 0.05 -44.526 -97.133 2010-06-02T19:52:05.226835968 INFO 2025-06-26 15:36:54,942 calibrate.py _nudge_pos():1806 [1] 1020: 0.180 0.0022928 -0.0021272 5005 16.68 22.350 -23.631 2010-06-02T20:08:46.228262656 INFO 2025-06-26 15:37:05,591 calibrate.py _nudge_pos():1806 [1] 2100: 0.180 0.0000588 0.0000278 25 0.08 119.586 64.473 2010-06-02T20:26:50.234003200 INFO 2025-06-26 15:41:11,924 calibrate.py _nudge_pos():1862 [1] 26232: - - - 5 0.01 - - INFO 2025-06-26 15:41:11,925 calibrate.py _nudge_pos():1868 [1] Points in final series = 201108 WARNING 2025-06-26 15:41:12,185 calibrate.py _depth_process():2193 [1] Expected sample_rate to be 10 Hz, instead it's 8.33 Hz INFO 2025-06-26 15:41:12,457 calibrate.py _hs2_process():2400 [1] Number of bad hs2 points: 1062 of 162828 INFO 2025-06-26 15:41:13,700 calibrate.py _geometric_depth_correction():3423 [1] hs2: d_beg_time_diff: 6 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 15:41:15,216 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 43 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 15:41:16,420 calibrate.py _geometric_depth_correction():3423 [1] ctd1: d_beg_time_diff: 43 seconds, d_end_time_diff: -1 seconds INFO 2025-06-26 15:41:16,423 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd1_salinity'] in 2010.153.01/ctd1.nc INFO 2025-06-26 15:41:16,424 calibrate.py _range_qc_combined_nc():898 [1] Setting 89 ctd1_salinity values to NaN INFO 2025-06-26 15:41:16,425 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd1_salinity', Range(min=30, max=40))] INFO 2025-06-26 15:41:16,425 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd1 INFO 2025-06-26 15:41:17,857 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 52 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 15:41:19,105 calibrate.py _geometric_depth_correction():3423 [1] ctd2: d_beg_time_diff: 52 seconds, d_end_time_diff: 0 seconds INFO 2025-06-26 15:41:19,108 calibrate.py _ctd_process():2919 [1] Performing range checking of ['ctd2_salinity'] in 2010.153.01/ctd2.nc INFO 2025-06-26 15:41:19,109 calibrate.py _range_qc_combined_nc():898 [1] Setting 129 ctd2_salinity values to NaN INFO 2025-06-26 15:41:19,110 calibrate.py _range_qc_combined_nc():910 [1] Checked for data outside of these variables and ranges: [('ctd2_salinity', Range(min=30, max=40))] INFO 2025-06-26 15:41:19,110 calibrate.py _range_qc_combined_nc():936 [1] Done range checking ctd2 ERROR 2025-06-26 15:41:19,110 calibrate.py process_logs():3542 [1] Error processing isus: isus has no orig_data - likely a missing or zero-sized .log file in missionlogs/2010.153.01 ERROR 2025-06-26 15:41:19,110 calibrate.py process_logs():3542 [1] Error processing biolume: biolume has no orig_data - likely a missing or zero-sized .log file in missionlogs/2010.153.01 ERROR 2025-06-26 15:41:19,110 calibrate.py process_logs():3542 [1] Error processing lopc: lopc has no orig_data - likely a missing or zero-sized .log file in missionlogs/2010.153.01 ERROR 2025-06-26 15:41:19,110 calibrate.py process_logs():3542 [1] Error processing ecopuck: ecopuck has no orig_data - likely a missing or zero-sized .log file in missionlogs/2010.153.01 INFO 2025-06-26 15:41:19,267 calibrate.py write_netcdf():3508 [1] Writing calibrated instrument data to /data/auv_data/dorado/missionnetcdfs/2010.153.01/dorado_2010.153.01_cal.nc INFO 2025-06-26 15:41:19,406 calibrate.py write_netcdf():3512 [1] Data variables written: ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_salinity_onboard, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_salinity, ctd2_salinity_onboard, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, depth_filtdepth, depth_filtpres, depth_time, gps_latitude, gps_longitude, gps_time, hs2_bbp420, hs2_bbp700, hs2_depth, hs2_fl700, hs2_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_posx, navigation_posy, navigation_roll, navigation_time, navigation_yaw, nudged_latitude, nudged_longitude, tailcone_propRpm, tailcone_time, time INFO 2025-06-26 15:41:19,409 process.py align():251 [1] Alignment steps for 2010.153.01 INFO 2025-06-26 15:41:19,441 align.py process_cal():139 [1] Processing dorado_2010.153.01_cal.nc from /data/auv_data/dorado/missionnetcdfs/2010.153.01 INFO 2025-06-26 15:41:19,494 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 15:41:19,500 align.py process_cal():249 [1] navigation_roll: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 15:41:19,646 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 15:41:19,655 align.py process_cal():249 [1] navigation_pitch: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 15:41:19,783 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 15:41:19,791 align.py process_cal():249 [1] navigation_yaw: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 15:41:19,869 align.py process_cal():161 [1] Skipping navigation_posx INFO 2025-06-26 15:41:19,869 align.py process_cal():161 [1] Skipping navigation_posy INFO 2025-06-26 15:41:19,922 align.py process_cal():206 [1] Using pitch corrected navigation_depth: mDepth from navigation.nc INFO 2025-06-26 15:41:19,930 align.py process_cal():249 [1] navigation_mWaterSpeed: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 15:41:20,057 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2010.153.01_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:41:20,064 align.py process_cal():249 [1] hs2_bbp420: instrument_sample_rate_hz = 3.97 INFO 2025-06-26 15:41:20,173 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2010.153.01_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:41:20,181 align.py process_cal():249 [1] hs2_bbp700: instrument_sample_rate_hz = 3.97 INFO 2025-06-26 15:41:20,291 align.py process_cal():206 [1] Using pitch corrected hs2_depth: Variable depth_filtdepth from dorado_2010.153.01_cal.nc linearly interpolated to hs2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:41:20,297 align.py process_cal():249 [1] hs2_fl700: instrument_sample_rate_hz = 3.97 INFO 2025-06-26 15:41:20,406 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.153.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:41:20,413 align.py process_cal():249 [1] ctd1_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:41:20,528 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.153.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:41:20,535 align.py process_cal():249 [1] ctd1_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:41:20,645 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.153.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:41:20,652 align.py process_cal():249 [1] ctd1_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:41:20,767 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.153.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:41:20,775 align.py process_cal():249 [1] ctd1_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:41:20,894 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.153.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:41:20,901 align.py process_cal():249 [1] ctd1_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:41:21,013 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.153.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:41:21,020 align.py process_cal():249 [1] ctd1_salinity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:41:21,131 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.153.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:41:21,138 align.py process_cal():249 [1] ctd1_dissolvedO2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:41:21,248 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.153.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:41:21,255 align.py process_cal():249 [1] ctd1_oxygen_mll: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:41:21,364 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.153.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:41:21,371 align.py process_cal():249 [1] ctd1_oxygen_umolkg: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:41:21,483 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.153.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:41:21,490 align.py process_cal():249 [1] ctd1_flow1: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:41:21,602 align.py process_cal():206 [1] Using pitch corrected ctd1_depth: Variable depth_filtdepth from dorado_2010.153.01_cal.nc linearly interpolated to ctd1_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:41:21,608 align.py process_cal():249 [1] ctd1_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:41:21,722 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.153.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:41:21,730 align.py process_cal():249 [1] ctd2_temperature: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:41:21,841 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.153.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:41:21,848 align.py process_cal():249 [1] ctd2_conductivity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:41:21,960 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.153.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:41:21,968 align.py process_cal():249 [1] ctd2_salinity: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:41:22,079 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.153.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:41:22,086 align.py process_cal():249 [1] ctd2_temperature_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:41:22,200 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.153.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:41:22,207 align.py process_cal():249 [1] ctd2_conductivity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:41:22,316 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.153.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:41:22,323 align.py process_cal():249 [1] ctd2_salinity_onboard: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:41:22,435 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.153.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:41:22,442 align.py process_cal():249 [1] ctd2_flow2: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:41:22,557 align.py process_cal():206 [1] Using pitch corrected ctd2_depth: Variable depth_filtdepth from dorado_2010.153.01_cal.nc linearly interpolated to ctd2_time and corrected for pitch using SensorOffset(x=4.5, y=0.0) INFO 2025-06-26 15:41:22,563 align.py process_cal():249 [1] ctd2_depth: instrument_sample_rate_hz = 4.00 INFO 2025-06-26 15:41:22,701 align.py process_cal():249 [1] tailcone_propRpm: instrument_sample_rate_hz = 5.00 INFO 2025-06-26 15:41:22,789 align.py write_netcdf():337 [1] Writing aligned data to /data/auv_data/dorado/missionnetcdfs/2010.153.01/dorado_2010.153.01_align.nc INFO 2025-06-26 15:41:22,896 align.py write_netcdf():342 [1] Data variables written: ctd1_conductivity, ctd1_conductivity_onboard, ctd1_depth, ctd1_dissolvedO2, ctd1_flow1, ctd1_latitude, ctd1_longitude, ctd1_oxygen_mll, ctd1_oxygen_umolkg, ctd1_salinity, ctd1_salinity_onboard, ctd1_temperature, ctd1_temperature_onboard, ctd1_time, ctd2_conductivity, ctd2_conductivity_onboard, ctd2_depth, ctd2_flow2, ctd2_latitude, ctd2_longitude, ctd2_salinity, ctd2_salinity_onboard, ctd2_temperature, ctd2_temperature_onboard, ctd2_time, hs2_bbp420, hs2_bbp700, hs2_depth, hs2_fl700, hs2_latitude, hs2_longitude, hs2_time, navigation_depth, navigation_latitude, navigation_longitude, navigation_mWaterSpeed, navigation_pitch, navigation_roll, navigation_time, navigation_yaw, tailcone_depth, tailcone_latitude, tailcone_longitude, tailcone_propRpm, tailcone_time INFO 2025-06-26 15:41:22,898 process.py resample():273 [1] Resampling steps for 2010.153.01 INFO 2025-06-26 15:41:22,898 resample.py resample_mission():1185 [1] Using depth_threshold = 10.00 m INFO 2025-06-26 15:41:22,924 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2010.153.01/dorado_2010.153.01_align.nc mission netCDF file INFO 2025-06-26 15:41:22,929 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2010.153.01/dorado_2010.153.01_align.nc mission netCDF file INFO 2025-06-26 15:41:22,931 resample.py get_mission_start_end():1145 [1] navigation: 2010-06-02T15:51:19.886409728 to 2010-06-03T03:09:38.428368640 (0 days 00:00:00.049996544 before mission_end) INFO 2025-06-26 15:41:22,933 resample.py get_mission_start_end():1145 [1] hs2 : 2010-06-02T15:50:52.198306304 to 2010-06-03T03:09:38.478365184 (0 days 00:00:00 before mission_end) INFO 2025-06-26 15:41:22,935 resample.py get_mission_start_end():1145 [1] ctd1 : 2010-06-02T15:51:29.655740416 to 2010-06-03T03:09:38.338374656 (0 days 00:00:00.139990528 before mission_end) INFO 2025-06-26 15:41:22,937 resample.py get_mission_start_end():1145 [1] ctd2 : 2010-06-02T15:51:38.045165824 to 2010-06-03T03:09:38.448367104 (0 days 00:00:00.029998080 before mission_end) INFO 2025-06-26 15:41:22,940 resample.py get_mission_start_end():1145 [1] tailcone : 2010-06-02T15:50:46.138721536 to 2010-06-03T03:09:38.348374016 (0 days 00:00:00.129991168 before mission_end) INFO 2025-06-26 15:41:22,940 resample.py instruments_variables():235 [1] Reading variables from /data/auv_data/dorado/missionnetcdfs/2010.153.01/dorado_2010.153.01_align.nc mission netCDF file INFO 2025-06-26 15:41:22,941 resample.py resample_coordinates():249 [1] Resampling coordinates depth, latitude and longitude with frequency 1S following 3 point median filter INFO 2025-06-26 15:41:23,359 resample.py resample_variable():1031 [1] Resampling navigation_roll with frequency 1S following 3 point median filter INFO 2025-06-26 15:41:23,429 resample.py resample_variable():1031 [1] Resampling navigation_pitch with frequency 1S following 3 point median filter INFO 2025-06-26 15:41:23,498 resample.py resample_variable():1031 [1] Resampling navigation_yaw with frequency 1S following 3 point median filter INFO 2025-06-26 15:41:23,566 resample.py resample_variable():1031 [1] Resampling navigation_mWaterSpeed with frequency 1S following 3 point median filter INFO 2025-06-26 15:41:23,625 resample.py resample_variable():1031 [1] Resampling hs2_bbp420 with frequency 1S following 3 point median filter INFO 2025-06-26 15:41:23,687 resample.py resample_variable():1031 [1] Resampling hs2_bbp700 with frequency 1S following 3 point median filter INFO 2025-06-26 15:41:23,744 resample.py resample_variable():1031 [1] Resampling hs2_fl700 with frequency 1S following 3 point median filter INFO 2025-06-26 15:41:23,801 resample.py resample_variable():1031 [1] Resampling ctd1_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 15:41:23,854 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 15:41:23,911 resample.py resample_variable():1031 [1] Resampling ctd1_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 15:41:23,965 resample.py resample_variable():1031 [1] Resampling ctd1_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 15:41:24,018 resample.py resample_variable():1031 [1] Resampling ctd1_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 15:41:24,072 resample.py resample_variable():1031 [1] Resampling ctd1_salinity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 15:41:24,125 resample.py resample_variable():1031 [1] Resampling ctd1_dissolvedO2 with frequency 1S following 3 point median filter INFO 2025-06-26 15:41:24,178 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_mll with frequency 1S following 3 point median filter INFO 2025-06-26 15:41:24,231 resample.py resample_variable():1031 [1] Resampling ctd1_oxygen_umolkg with frequency 1S following 3 point median filter INFO 2025-06-26 15:41:24,285 resample.py resample_variable():1031 [1] Resampling ctd1_flow1 with frequency 1S following 3 point median filter INFO 2025-06-26 15:41:24,341 resample.py resample_variable():1031 [1] Resampling ctd2_temperature with frequency 1S following 3 point median filter INFO 2025-06-26 15:41:24,400 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity with frequency 1S following 3 point median filter INFO 2025-06-26 15:41:24,461 resample.py resample_variable():1031 [1] Resampling ctd2_salinity with frequency 1S following 3 point median filter INFO 2025-06-26 15:41:24,518 resample.py resample_variable():1031 [1] Resampling ctd2_temperature_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 15:41:24,576 resample.py resample_variable():1031 [1] Resampling ctd2_conductivity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 15:41:24,634 resample.py resample_variable():1031 [1] Resampling ctd2_salinity_onboard with frequency 1S following 3 point median filter INFO 2025-06-26 15:41:24,692 resample.py resample_variable():1031 [1] Resampling ctd2_flow2 with frequency 1S following 3 point median filter INFO 2025-06-26 15:41:24,761 resample.py resample_variable():1031 [1] Resampling tailcone_propRpm with frequency 1S following 3 point median filter INFO 2025-06-26 15:41:25,088 resample.py resample_mission():1297 [1] Saved resampled mission to /data/auv_data/dorado/missionnetcdfs/2010.153.01/dorado_2010.153.01_1S.nc INFO 2025-06-26 15:41:28,221 create_products.py _get_best_ctd():380 [1] ctdToUse = ctd1 INFO 2025-06-26 15:41:32,164 create_products.py gulper_odv():522 [1] Wrote 4 Gulper data lines to /data/auv_data/dorado/missionodvs/2010.153.01/dorado_2010.153.01_1S_Gulper.txt INFO 2025-06-26 15:41:32,164 process.py archive():337 [1] Archiving steps for 2010.153.01 INFO 2025-06-26 15:41:32,164 process.py archive():347 [1] nc_file_base = /data/auv_data/dorado/missionnetcdfs/2010.153.01/dorado_2010.153.01, BASE_PATH = /data/auv_data INFO 2025-06-26 15:41:32,166 archive.py copy_to_AUVTCD():60 [1] Archiving /data/auv_data/dorado/missionnetcdfs/2010.153.01/dorado_2010.153.01 files to /Volumes/AUVCTD/surveys/2010/netcdf INFO 2025-06-26 15:41:32,167 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2010/netcdf/dorado_2010.153.01_1S.nc INFO 2025-06-26 15:41:32,195 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.153.01/dorado_2010.153.01_1S.nc /Volumes/AUVCTD/surveys/2010/netcdf done. INFO 2025-06-26 15:41:32,196 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2010/netcdf/dorado_2010.153.01_cal.nc INFO 2025-06-26 15:41:32,355 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.153.01/dorado_2010.153.01_cal.nc /Volumes/AUVCTD/surveys/2010/netcdf done. INFO 2025-06-26 15:41:32,356 archive.py copy_to_AUVTCD():78 [1] Removing /Volumes/AUVCTD/surveys/2010/netcdf/dorado_2010.153.01_align.nc INFO 2025-06-26 15:41:32,506 archive.py copy_to_AUVTCD():82 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.153.01/dorado_2010.153.01_align.nc /Volumes/AUVCTD/surveys/2010/netcdf done. INFO 2025-06-26 15:41:32,549 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.153.01/ctdDriver.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010153/2010.153.01 done. INFO 2025-06-26 15:41:32,591 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.153.01/ctdDriver2.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010153/2010.153.01 done. INFO 2025-06-26 15:41:32,601 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.153.01/gps.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010153/2010.153.01 done. INFO 2025-06-26 15:41:32,638 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.153.01/hydroscatlog.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010153/2010.153.01 done. INFO 2025-06-26 15:41:32,760 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.153.01/navigation.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010153/2010.153.01 done. INFO 2025-06-26 15:41:32,806 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.153.01/parosci.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010153/2010.153.01 done. INFO 2025-06-26 15:41:32,839 archive.py copy_to_AUVTCD():108 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.153.01/tailCone.nc /Volumes/AUVCTD/missionnetcdfs/2010/2010153/2010.153.01 done. INFO 2025-06-26 15:41:32,839 archive.py copy_to_AUVTCD():116 [1] Archiving product files INFO 2025-06-26 15:41:32,841 archive.py copy_to_AUVTCD():133 [1] Removing /Volumes/AUVCTD/surveys/2010/odv/dorado_2010.153.01_1S_Gulper.txt INFO 2025-06-26 15:41:32,845 archive.py copy_to_AUVTCD():136 [1] copyfile /data/auv_data/dorado/missionodvs/2010.153.01/dorado_2010.153.01_1S_Gulper.txt /Volumes/AUVCTD/surveys/2010/odv done. INFO 2025-06-26 15:41:32,845 archive.py copy_to_AUVTCD():161 [1] copyfile /data/auv_data/dorado/missionnetcdfs/2010.153.01/dorado_2010.153.01_processing.log /Volumes/AUVCTD/surveys/2010/netcdf